Wall clock time and date at job start Tue Mar 31 2020 11:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46856 * 2 1 4 4 C 1.52999 * 109.47268 * 240.00525 * 2 1 3 5 5 C 1.50704 * 109.46938 * 64.99644 * 4 2 1 6 6 H 1.07999 * 120.00409 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99595 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00504 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00085 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46933 * 59.99632 * 9 7 5 11 11 H 1.48496 * 109.47399 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46959 * 300.00060 * 9 7 5 13 13 C 1.50692 * 109.47313 * 120.00316 * 2 1 3 14 14 N 1.30295 * 126.35190 * 59.97359 * 13 2 1 15 15 N 1.28524 * 110.06033 * 180.02562 * 14 13 2 16 16 C 1.31218 * 109.85726 * 0.02562 * 15 14 13 17 17 N 1.38579 * 126.47153 * 179.97438 * 16 15 14 18 18 C 1.47702 * 111.00039 * 0.02562 * 17 16 15 19 19 C 1.55797 * 106.67970 * 240.23265 * 18 17 16 20 20 H 1.09009 * 113.25366 * 212.11664 * 19 18 17 21 21 C 1.53167 * 106.07778 * 87.77614 * 19 18 17 22 22 C 1.47769 * 113.60327 * 210.86349 * 21 19 18 23 23 C 1.29190 * 124.65535 * 16.81222 * 22 21 19 24 24 C 1.49633 * 123.38555 * 358.36950 * 23 22 21 25 25 C 1.50045 * 113.21939 * 12.91243 * 24 23 22 26 26 H 1.09001 * 108.71865 * 199.81085 * 25 24 23 27 27 C 1.48045 * 110.70494 * 239.72237 * 17 16 15 28 28 N 1.36457 * 107.05541 * 0.22722 * 16 15 14 29 29 C 1.46502 * 127.13572 * 179.77571 * 28 16 15 30 30 H 1.08997 * 109.47374 * 59.99608 * 1 2 3 31 31 H 1.08998 * 109.47064 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47124 * 299.99585 * 1 2 3 33 33 H 1.08994 * 109.47460 * 184.99595 * 4 2 1 34 34 H 1.09005 * 109.46928 * 304.99904 * 4 2 1 35 35 H 0.96999 * 120.00596 * 180.02562 * 8 7 5 36 36 H 1.09004 * 110.01856 * 120.92963 * 18 17 16 37 37 H 1.09000 * 110.01697 * 359.53644 * 18 17 16 38 38 H 1.09000 * 108.80092 * 330.68201 * 21 19 18 39 39 H 1.08999 * 108.79773 * 88.92789 * 21 19 18 40 40 H 1.07998 * 117.68397 * 197.38687 * 22 21 19 41 41 H 1.08002 * 118.31020 * 178.65800 * 23 22 21 42 42 H 1.09000 * 108.73015 * 133.87988 * 24 23 22 43 43 H 1.09001 * 108.73517 * 252.07052 * 24 23 22 44 44 H 1.08997 * 110.90533 * 27.33439 * 27 17 16 45 45 H 1.08998 * 110.11805 * 264.49757 * 27 17 16 46 46 H 1.08999 * 109.47029 * 90.02577 * 29 28 16 47 47 H 1.08995 * 109.46839 * 210.02051 * 29 28 16 48 48 H 1.09000 * 109.46880 * 330.02283 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6413 0.0573 -2.4766 6 1 1.0805 0.9748 -2.3756 7 6 1.9923 -0.4019 -3.7283 8 7 2.6755 -1.5189 -3.8513 9 14 1.4987 0.5632 -5.2496 10 1 2.0917 1.9232 -5.1870 11 1 1.9936 -0.1367 -6.4622 12 1 0.0188 0.6708 -5.3090 13 6 2.0323 -0.7104 1.2303 14 7 1.7947 -1.9489 1.5582 15 7 2.3756 -2.2299 2.6697 16 6 3.0199 -1.1769 3.1146 17 7 3.7619 -1.0978 4.2823 18 6 3.7496 -2.3856 5.0056 19 6 3.1149 -2.1086 6.4012 20 1 3.5182 -2.7426 7.1909 21 6 1.6029 -2.2729 6.2197 22 6 0.8025 -1.4113 7.1144 23 6 1.2610 -0.3826 7.7472 24 6 2.6906 0.0544 7.6819 25 6 3.4651 -0.6174 6.5863 26 1 4.5289 -0.5358 6.8092 27 6 3.2153 -0.0553 5.1801 28 7 2.8167 -0.1729 2.2131 29 6 3.3344 1.1958 2.2820 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.1263 -0.7993 -1.2057 34 1 1.6054 -1.7197 -1.2953 35 1 2.9228 -1.8418 -4.7319 36 1 4.7678 -2.7558 5.1256 37 1 3.1491 -3.1139 4.4605 38 1 1.3422 -2.0146 5.1934 39 1 1.3395 -3.3160 6.3948 40 1 -0.2377 -1.6645 7.2563 41 1 0.5783 0.1889 8.3586 42 1 2.7202 1.1322 7.5214 43 1 3.1693 -0.1702 8.6350 44 1 2.1485 0.0864 5.0075 45 1 3.7553 0.8811 5.0398 46 1 4.3029 1.2435 1.7841 47 1 2.6380 1.8730 1.7875 48 1 3.4475 1.4894 3.3256 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351181763.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:48 Heat of formation + Delta-G solvation = 80.335221 kcal Electronic energy + Delta-G solvation = -27266.102706 eV Core-core repulsion = 23742.677995 eV Total energy + Delta-G solvation = -3523.424710 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.06325 -41.44025 -37.46301 -36.87299 -35.80282 -34.26651 -32.78757 -32.33471 -29.82623 -28.92681 -28.59121 -28.26949 -25.93049 -25.34580 -23.86035 -22.88809 -22.15835 -21.70212 -20.50635 -18.65223 -18.31722 -18.16190 -17.52317 -17.25660 -16.87079 -16.48025 -16.18552 -15.65540 -15.06515 -15.02217 -14.77421 -14.48823 -14.42351 -14.31305 -14.02036 -13.78981 -13.66947 -13.51052 -13.14885 -12.96040 -12.87868 -12.81678 -12.77352 -12.65141 -12.34833 -12.27558 -11.99845 -11.77820 -11.50787 -11.48183 -11.30303 -11.17459 -11.08279 -11.03990 -10.64439 -10.54012 -9.86582 -9.23903 -8.16160 -6.28594 0.79012 1.26565 1.39207 1.43699 1.47291 1.54707 1.83249 2.43699 2.68239 3.17551 3.31560 3.36923 3.51377 3.62366 3.73386 3.94603 4.08169 4.17087 4.20797 4.27022 4.29709 4.34348 4.38179 4.42628 4.44522 4.51683 4.54713 4.63630 4.68577 4.77054 4.81156 4.88154 4.95367 5.05646 5.08485 5.10142 5.14208 5.16038 5.20931 5.35154 5.36056 5.44993 5.48212 5.58773 5.69178 5.77278 5.83191 6.05762 6.16628 6.21046 6.87277 7.40785 7.79538 8.96265 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.028266 B = 0.002886 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.334460 B = 9699.652742 C = 9764.006814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.010 3.990 3 H 0.097 0.903 4 C 0.052 3.948 5 C -0.530 4.530 6 H 0.078 0.922 7 C -0.003 4.003 8 N -0.938 5.938 9 Si 0.968 3.032 10 H -0.261 1.261 11 H -0.290 1.290 12 H -0.264 1.264 13 C 0.196 3.804 14 N -0.327 5.327 15 N -0.361 5.361 16 C 0.347 3.653 17 N -0.436 5.436 18 C 0.038 3.962 19 C -0.089 4.089 20 H 0.123 0.877 21 C -0.089 4.089 22 C -0.172 4.172 23 C -0.149 4.149 24 C -0.076 4.076 25 C -0.083 4.083 26 H 0.104 0.896 27 C 0.045 3.955 28 N -0.483 5.483 29 C 0.065 3.935 30 H 0.075 0.925 31 H 0.038 0.962 32 H 0.061 0.939 33 H -0.024 1.024 34 H -0.012 1.012 35 H 0.262 0.738 36 H 0.101 0.899 37 H 0.069 0.931 38 H 0.039 0.961 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.119 0.881 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.041 0.959 45 H 0.112 0.888 46 H 0.085 0.915 47 H 0.106 0.894 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.735 8.776 27.190 28.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.011 4.011 3 H 0.115 0.885 4 C 0.014 3.986 5 C -0.567 4.567 6 H 0.096 0.904 7 C -0.201 4.201 8 N -0.579 5.579 9 Si 0.792 3.208 10 H -0.186 1.186 11 H -0.216 1.216 12 H -0.189 1.189 13 C -0.073 4.073 14 N -0.165 5.165 15 N -0.205 5.205 16 C -0.010 4.010 17 N -0.161 5.161 18 C -0.088 4.088 19 C -0.108 4.108 20 H 0.141 0.859 21 C -0.126 4.126 22 C -0.190 4.190 23 C -0.167 4.167 24 C -0.113 4.113 25 C -0.102 4.102 26 H 0.122 0.878 27 C -0.081 4.081 28 N -0.178 5.178 29 C -0.075 4.075 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.080 0.920 33 H -0.005 1.005 34 H 0.006 0.994 35 H 0.070 0.930 36 H 0.120 0.880 37 H 0.088 0.912 38 H 0.057 0.943 39 H 0.089 0.911 40 H 0.115 0.885 41 H 0.137 0.863 42 H 0.109 0.891 43 H 0.118 0.882 44 H 0.060 0.940 45 H 0.130 0.870 46 H 0.103 0.897 47 H 0.124 0.876 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.807 7.405 26.874 27.934 hybrid contribution -0.342 0.604 -1.255 1.434 sum 1.465 8.008 25.619 26.881 Atomic orbital electron populations 1.21576 0.92391 1.01515 1.01979 1.19735 0.97155 0.97869 0.86369 0.88540 1.18828 0.93521 0.94796 0.91489 1.21556 1.35117 1.08939 0.91134 0.90394 1.26048 0.95028 0.95979 1.03024 1.70154 1.40077 1.23186 1.24445 0.85453 0.79089 0.78723 0.77499 1.18557 1.21636 1.18855 1.25306 0.96091 0.91720 0.94183 1.73870 1.21520 1.12627 1.08477 1.74322 1.13842 1.24121 1.08201 1.23009 0.97493 0.86151 0.94390 1.60892 1.44271 1.09877 1.01016 1.23491 1.03148 0.88659 0.93522 1.22576 0.94100 0.97853 0.96274 0.85863 1.20047 0.94764 0.99876 0.97928 1.21471 0.99891 0.98050 0.99592 1.22115 0.97961 0.97015 0.99649 1.19645 0.91975 1.01095 0.98557 1.21262 1.02582 0.93679 0.92716 0.87759 1.23177 0.98309 0.94962 0.91646 1.46252 1.40571 1.13435 1.17492 1.22492 1.01434 0.77313 1.06309 0.90633 0.94310 0.91975 1.00525 0.99397 0.92963 0.88041 0.91228 0.94261 0.91132 0.88473 0.86315 0.89089 0.88164 0.94032 0.87043 0.89651 0.87572 0.86656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.45 8.99 71.98 0.65 -3.80 16 2 C 0.01 0.40 2.70 -11.54 -0.03 0.37 16 3 H 0.10 3.52 6.95 -2.39 -0.02 3.51 16 4 C 0.05 2.84 4.43 29.85 0.13 2.97 16 5 C -0.53 -29.32 8.41 25.60 0.22 -29.10 16 6 H 0.08 3.92 7.06 -2.91 -0.02 3.90 16 7 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 8 N -0.94 -58.91 13.29 21.45 0.28 -58.63 16 9 Si 0.97 43.79 29.54 68.60 2.03 45.81 16 10 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 11 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 13 C 0.20 8.22 6.58 137.64 0.91 9.13 16 14 N -0.33 -15.54 12.18 -49.54 -0.60 -16.14 16 15 N -0.36 -15.31 10.41 -58.00 -0.60 -15.92 16 16 C 0.35 11.90 6.56 260.11 1.71 13.61 16 17 N -0.44 -10.95 5.26 -694.54 -3.65 -14.60 16 18 C 0.04 0.88 5.97 87.12 0.52 1.40 16 19 C -0.09 -1.45 3.89 -9.33 -0.04 -1.48 16 20 H 0.12 1.47 8.14 -2.38 -0.02 1.45 16 21 C -0.09 -1.86 4.61 29.01 0.13 -1.72 16 22 C -0.17 -3.06 9.71 26.58 0.26 -2.80 16 23 C -0.15 -1.98 9.88 27.14 0.27 -1.72 16 24 C -0.08 -0.71 5.59 28.56 0.16 -0.55 16 25 C -0.08 -1.05 2.64 -11.15 -0.03 -1.08 16 26 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 27 C 0.05 0.80 4.44 86.24 0.38 1.18 16 28 N -0.48 -16.16 3.21 -538.19 -1.73 -17.88 16 29 C 0.07 1.42 10.80 127.77 1.38 2.80 16 30 H 0.07 2.84 6.95 -2.39 -0.02 2.82 16 31 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 33 H -0.02 -1.45 8.14 -2.39 -0.02 -1.46 16 34 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 35 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 36 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.07 2.07 5.92 -2.39 -0.01 2.06 16 38 H 0.04 1.12 6.58 -2.39 -0.02 1.11 16 39 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.10 1.72 8.06 -2.91 -0.02 1.69 16 41 H 0.12 1.25 8.06 -2.91 -0.02 1.23 16 42 H 0.09 0.62 8.11 -2.39 -0.02 0.60 16 43 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.04 0.91 7.26 -2.39 -0.02 0.90 16 45 H 0.11 1.42 6.70 -2.39 -0.02 1.41 16 46 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.11 1.98 7.24 -2.39 -0.02 1.96 16 48 H 0.12 1.72 5.45 -2.39 -0.01 1.71 16 Total: -1.00 -77.97 369.90 3.74 -74.23 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.94 Total: 13.65 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 7.07 Total: -10.53 kcal Atomic # 7 Polarization: -116.87 SS G_CDS: -6.30 Total: -123.17 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -77.97 3.74 -74.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351181763.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.565 kcal (2) G-P(sol) polarization free energy of solvation -77.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds