Wall clock time and date at job start Tue Mar 31 2020 11:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.51442 * 121.10494 * 2 1 4 4 C 1.53291 * 108.23983 * 229.04716 * 3 2 1 5 5 N 1.46831 * 109.40261 * 306.20788 * 4 3 2 6 6 C 1.38582 * 111.00208 * 189.75415 * 5 4 3 7 7 N 1.31216 * 126.47144 * 344.03384 * 6 5 4 8 8 N 1.28526 * 109.85758 * 179.97438 * 7 6 5 9 9 C 1.30294 * 110.05738 * 359.71879 * 8 7 6 10 10 C 1.50699 * 126.35344 * 180.30784 * 9 8 7 11 11 C 1.53000 * 109.47147 * 270.16076 * 10 9 8 12 12 C 1.50697 * 109.46833 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00449 * 359.97438 * 12 11 10 14 14 C 1.37886 * 120.00142 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99978 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 119.99497 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47290 * 90.00230 * 16 14 12 18 18 H 1.48498 * 109.47152 * 209.99684 * 16 14 12 19 19 H 1.48501 * 109.47527 * 330.00223 * 16 14 12 20 20 N 1.36453 * 126.47173 * 164.01109 * 6 5 4 21 21 C 1.46498 * 127.13650 * 0.02562 * 20 6 5 22 22 C 1.52996 * 109.46776 * 268.20755 * 21 20 6 23 23 C 1.53001 * 117.50134 * 243.28698 * 22 21 20 24 24 C 1.53012 * 117.49663 * 174.62822 * 22 21 20 25 25 C 1.46827 * 111.56429 * 65.38536 * 5 4 3 26 26 C 1.51425 * 121.11541 * 180.02562 * 2 1 3 27 27 H 1.07998 * 120.00477 * 0.02562 * 1 2 3 28 28 H 1.08005 * 119.99404 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.70544 * 109.36038 * 3 2 1 30 30 H 1.08996 * 109.74221 * 348.75496 * 3 2 1 31 31 H 1.09004 * 109.48418 * 186.22883 * 4 3 2 32 32 H 1.09000 * 109.49449 * 66.19595 * 4 3 2 33 33 H 1.08999 * 109.46608 * 30.15798 * 10 9 8 34 34 H 1.09002 * 109.47223 * 150.15699 * 10 9 8 35 35 H 1.08999 * 109.47139 * 299.99396 * 11 10 9 36 36 H 1.09003 * 109.46877 * 59.99901 * 11 10 9 37 37 H 0.97000 * 119.99613 * 180.02562 * 15 14 12 38 38 H 1.09001 * 109.47347 * 148.21159 * 21 20 6 39 39 H 1.08997 * 109.47149 * 28.20854 * 21 20 6 40 40 H 1.09002 * 115.55351 * 28.96352 * 22 21 20 41 41 H 1.09009 * 117.49688 * 0.02562 * 23 22 21 42 42 H 1.08996 * 117.50028 * 145.02040 * 23 22 21 43 43 H 1.09002 * 117.49919 * 214.97752 * 24 22 21 44 44 H 1.08996 * 117.49679 * 359.97438 * 24 22 21 45 45 H 1.09002 * 109.48271 * 54.59325 * 25 5 4 46 46 H 1.08996 * 109.48385 * 174.63226 * 25 5 4 47 47 H 1.08996 * 109.71257 * 250.64225 * 26 2 1 48 48 H 1.08999 * 109.71041 * 11.26600 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0924 1.2967 0.0000 4 6 3.1573 1.2145 -1.0996 5 7 3.9611 0.0004 -0.9104 6 6 5.0657 0.0006 -1.7473 7 7 5.2477 0.7647 -2.7984 8 7 6.3828 0.4992 -3.3398 9 6 6.9899 -0.4379 -2.6683 10 6 8.3435 -1.0241 -2.9768 11 6 8.1792 -2.2199 -3.9170 12 6 9.5329 -2.8056 -4.2260 13 1 10.4215 -2.3684 -3.7953 14 6 9.6371 -3.8990 -5.0595 15 7 10.8185 -4.4098 -5.3295 16 14 8.1001 -4.6548 -5.8050 17 1 7.8091 -4.0023 -7.1069 18 1 8.3164 -6.1085 -6.0175 19 1 6.9529 -4.4543 -4.8836 20 7 6.1696 -0.7933 -1.6336 21 6 6.4257 -1.8108 -0.6112 22 6 7.1844 -1.1795 0.5578 23 6 8.5936 -1.6995 0.8488 24 6 7.4380 -2.0519 1.7890 25 6 3.1575 -1.2138 -1.1000 26 6 2.0926 -1.2964 -0.0006 27 1 -0.5401 0.9352 -0.0004 28 1 -0.5399 -0.9354 0.0004 29 1 2.5736 1.4356 0.9682 30 1 1.4211 2.1317 -0.2001 31 1 3.8038 2.0905 -1.0458 32 1 2.6715 1.1806 -2.0747 33 1 8.9660 -0.2683 -3.4557 34 1 8.8170 -1.3518 -2.0514 35 1 7.5567 -2.9757 -3.4382 36 1 7.7057 -1.8921 -4.8425 37 1 10.8918 -5.1788 -5.9161 38 1 7.0236 -2.6148 -1.0405 39 1 5.4780 -2.2137 -0.2541 40 1 6.9953 -0.1188 0.7230 41 1 8.9804 -2.4913 0.2071 42 1 9.3314 -0.9811 1.2057 43 1 7.4163 -1.5651 2.7640 44 1 7.0640 -3.0755 1.7661 45 1 2.6715 -1.1794 -2.0750 46 1 3.8041 -2.0896 -1.0466 47 1 2.5737 -1.4358 0.9674 48 1 1.4210 -2.1311 -0.2014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351360186.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:23 Heat of formation + Delta-G solvation = 119.846490 kcal Electronic energy + Delta-G solvation = -27086.410022 eV Core-core repulsion = 23564.698649 eV Total energy + Delta-G solvation = -3521.711373 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.73268 -39.23891 -37.79383 -35.13718 -34.50669 -33.64912 -31.84228 -31.50823 -29.49190 -27.95839 -27.20849 -25.47019 -23.85727 -22.81197 -22.47459 -21.67122 -21.16134 -20.58427 -19.93526 -18.57518 -17.44070 -16.82972 -16.36582 -16.10452 -15.28297 -15.17033 -14.94884 -14.66793 -14.34768 -14.14628 -13.93412 -13.76616 -13.51203 -13.21709 -12.96982 -12.73954 -12.59295 -12.22487 -12.01980 -11.66485 -11.61551 -11.60820 -11.32495 -11.22270 -11.08403 -10.76496 -10.61500 -10.48676 -10.39824 -10.16023 -10.11117 -9.87334 -9.80004 -9.50258 -9.31374 -9.21429 -8.60913 -8.09491 -6.11828 -4.11088 1.92468 2.01071 2.38204 3.15937 3.26801 3.34224 3.36955 3.55455 3.69006 4.32092 4.38858 4.39446 4.49255 4.62348 4.72670 4.79640 4.88512 4.92448 4.98646 5.05174 5.05606 5.16384 5.18012 5.22343 5.27483 5.36061 5.46224 5.49173 5.52767 5.54658 5.57092 5.64118 5.77080 5.82385 5.86145 5.98471 6.06542 6.14568 6.23143 6.29325 6.32317 6.48463 6.54897 6.61292 6.84836 7.11624 7.25232 7.36785 7.67444 8.42817 8.91808 9.10502 9.50017 11.01079 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.013789 B = 0.003765 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.190047 B = 7436.094809 C = 8130.790723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.122 4.122 3 C -0.083 4.083 4 C 0.078 3.922 5 N -0.452 5.452 6 C 0.334 3.666 7 N -0.322 5.322 8 N -0.295 5.295 9 C 0.212 3.788 10 C -0.022 4.022 11 C -0.003 4.003 12 C -0.522 4.522 13 H 0.076 0.924 14 C 0.072 3.928 15 N -0.899 5.899 16 Si 0.877 3.123 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.269 1.269 20 N -0.471 5.471 21 C 0.140 3.860 22 C -0.170 4.170 23 C -0.173 4.173 24 C -0.169 4.169 25 C 0.059 3.941 26 C -0.079 4.079 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.011 0.989 36 H 0.020 0.980 37 H 0.264 0.736 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.050 0.950 46 H 0.079 0.921 47 H 0.084 0.916 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.197 5.994 16.855 24.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.122 4.122 3 C -0.120 4.120 4 C -0.049 4.049 5 N -0.177 5.177 6 C -0.023 4.023 7 N -0.166 5.166 8 N -0.134 5.134 9 C -0.055 4.055 10 C -0.062 4.062 11 C -0.042 4.042 12 C -0.560 4.560 13 H 0.094 0.906 14 C -0.130 4.130 15 N -0.537 5.537 16 Si 0.704 3.296 17 H -0.200 1.200 18 H -0.213 1.213 19 H -0.194 1.194 20 N -0.165 5.165 21 C 0.017 3.983 22 C -0.189 4.189 23 C -0.210 4.210 24 C -0.206 4.206 25 C -0.068 4.068 26 C -0.117 4.117 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.030 0.970 36 H 0.039 0.961 37 H 0.074 0.926 38 H 0.121 0.879 39 H 0.113 0.887 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.068 0.932 46 H 0.097 0.903 47 H 0.103 0.897 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.223 6.895 16.170 24.610 hybrid contribution -0.821 -1.487 -0.156 1.706 sum -18.044 5.408 16.014 24.724 Atomic orbital electron populations 1.23616 0.94833 1.01947 1.02783 1.21982 0.94971 0.95856 0.99379 1.20947 0.96456 0.94976 0.99627 1.21999 0.94249 0.90586 0.98061 1.58420 1.06051 1.04851 1.48355 1.22328 0.90037 0.95160 0.94737 1.74531 1.12756 1.24084 1.05253 1.74017 1.01865 1.14281 1.23222 1.25560 0.97370 0.96060 0.86521 1.20228 0.85401 0.99235 1.01357 1.19543 0.98402 0.91880 0.94380 1.21008 0.91973 1.13578 1.29414 0.90551 1.24959 0.95715 0.96543 0.95807 1.69897 1.22868 1.24036 1.36925 0.86829 0.84030 0.78410 0.80299 1.20034 1.21287 1.19403 1.46187 1.14664 1.31197 1.24402 1.21481 1.01660 0.88965 0.86158 1.22507 0.99840 0.99924 0.96584 1.23185 0.91022 1.03787 1.02971 1.22946 1.03190 1.00344 0.94157 1.22281 0.94767 0.91215 0.98561 1.20881 0.96264 0.95247 0.99305 0.88316 0.88418 0.89932 0.90186 0.89412 0.92694 0.88778 0.90423 0.97049 0.96146 0.92591 0.87915 0.88708 0.87354 0.87582 0.88508 0.88588 0.88502 0.93157 0.90314 0.89743 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.44 14.01 29.01 0.41 -1.03 16 2 C -0.12 -1.02 5.42 -100.35 -0.54 -1.56 16 3 C -0.08 -0.69 6.21 -27.37 -0.17 -0.86 16 4 C 0.08 0.88 4.92 -3.71 -0.02 0.86 16 5 N -0.45 -5.64 4.59 -174.27 -0.80 -6.44 16 6 C 0.33 5.38 6.88 -318.88 -2.19 3.19 16 7 N -0.32 -6.19 11.41 30.31 0.35 -5.85 16 8 N -0.30 -6.20 12.18 32.99 0.40 -5.80 16 9 C 0.21 4.05 7.32 -154.01 -1.13 2.93 16 10 C -0.02 -0.44 5.40 -27.88 -0.15 -0.59 16 11 C 0.00 -0.08 4.02 -27.88 -0.11 -0.19 16 12 C -0.52 -14.26 9.66 -34.44 -0.33 -14.59 16 13 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 14 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 15 N -0.90 -27.00 13.96 55.43 0.77 -26.23 16 16 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 17 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 20 N -0.47 -7.54 2.81 -114.09 -0.32 -7.86 16 21 C 0.14 1.77 6.01 -4.04 -0.02 1.75 16 22 C -0.17 -1.91 6.01 -90.62 -0.54 -2.45 16 23 C -0.17 -1.87 10.18 -26.69 -0.27 -2.14 16 24 C -0.17 -1.53 10.26 -26.68 -0.27 -1.81 16 25 C 0.06 0.64 5.26 -3.71 -0.02 0.62 16 26 C -0.08 -0.65 6.21 -27.38 -0.17 -0.82 16 27 H 0.10 0.64 7.95 -52.49 -0.42 0.22 16 28 H 0.10 0.64 7.95 -52.48 -0.42 0.22 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.56 7.93 -51.93 -0.41 0.15 16 31 H 0.09 1.06 8.00 -51.93 -0.42 0.64 16 32 H 0.05 0.68 8.10 -51.93 -0.42 0.26 16 33 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 34 H 0.08 1.39 7.98 -51.93 -0.41 0.97 16 35 H 0.01 0.26 7.20 -51.93 -0.37 -0.11 16 36 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.10 1.37 7.72 -51.93 -0.40 0.97 16 39 H 0.09 1.01 6.07 -51.93 -0.32 0.70 16 40 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.11 1.24 8.03 -51.92 -0.42 0.83 16 42 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.05 0.60 8.10 -51.93 -0.42 0.18 16 46 H 0.08 0.84 6.04 -51.93 -0.31 0.53 16 47 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.08 0.55 7.93 -51.93 -0.41 0.14 16 LS Contribution 386.26 15.07 5.82 5.82 Total: -1.00 -32.14 386.26 -12.18 -44.32 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -8.09 Total: -0.09 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -5.64 Total: -14.78 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: 0.40 Total: -52.18 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.14 -12.18 -44.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351360186.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.162 kcal (2) G-P(sol) polarization free energy of solvation -32.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds