Wall clock time and date at job start Tue Mar 31 2020 11:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.51442 * 121.10494 * 2 1 4 4 C 1.53291 * 108.23983 * 229.04716 * 3 2 1 5 5 N 1.46831 * 109.40261 * 306.20788 * 4 3 2 6 6 C 1.38582 * 111.00208 * 189.75415 * 5 4 3 7 7 N 1.31216 * 126.47144 * 344.03384 * 6 5 4 8 8 N 1.28526 * 109.85758 * 179.97438 * 7 6 5 9 9 C 1.30294 * 110.05738 * 359.71879 * 8 7 6 10 10 C 1.50699 * 126.35344 * 180.30784 * 9 8 7 11 11 C 1.53000 * 109.47147 * 270.16076 * 10 9 8 12 12 C 1.50697 * 109.46833 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00449 * 359.97438 * 12 11 10 14 14 C 1.37886 * 120.00142 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99978 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 119.99497 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47290 * 90.00230 * 16 14 12 18 18 H 1.48498 * 109.47152 * 209.99684 * 16 14 12 19 19 H 1.48501 * 109.47527 * 330.00223 * 16 14 12 20 20 N 1.36453 * 126.47173 * 164.01109 * 6 5 4 21 21 C 1.46498 * 127.13650 * 0.02562 * 20 6 5 22 22 C 1.52996 * 109.46776 * 268.20755 * 21 20 6 23 23 C 1.53001 * 117.50134 * 243.28698 * 22 21 20 24 24 C 1.53012 * 117.49663 * 174.62822 * 22 21 20 25 25 C 1.46827 * 111.56429 * 65.38536 * 5 4 3 26 26 C 1.51425 * 121.11541 * 180.02562 * 2 1 3 27 27 H 1.07998 * 120.00477 * 0.02562 * 1 2 3 28 28 H 1.08005 * 119.99404 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.70544 * 109.36038 * 3 2 1 30 30 H 1.08996 * 109.74221 * 348.75496 * 3 2 1 31 31 H 1.09004 * 109.48418 * 186.22883 * 4 3 2 32 32 H 1.09000 * 109.49449 * 66.19595 * 4 3 2 33 33 H 1.08999 * 109.46608 * 30.15798 * 10 9 8 34 34 H 1.09002 * 109.47223 * 150.15699 * 10 9 8 35 35 H 1.08999 * 109.47139 * 299.99396 * 11 10 9 36 36 H 1.09003 * 109.46877 * 59.99901 * 11 10 9 37 37 H 0.97000 * 119.99613 * 180.02562 * 15 14 12 38 38 H 1.09001 * 109.47347 * 148.21159 * 21 20 6 39 39 H 1.08997 * 109.47149 * 28.20854 * 21 20 6 40 40 H 1.09002 * 115.55351 * 28.96352 * 22 21 20 41 41 H 1.09009 * 117.49688 * 0.02562 * 23 22 21 42 42 H 1.08996 * 117.50028 * 145.02040 * 23 22 21 43 43 H 1.09002 * 117.49919 * 214.97752 * 24 22 21 44 44 H 1.08996 * 117.49679 * 359.97438 * 24 22 21 45 45 H 1.09002 * 109.48271 * 54.59325 * 25 5 4 46 46 H 1.08996 * 109.48385 * 174.63226 * 25 5 4 47 47 H 1.08996 * 109.71257 * 250.64225 * 26 2 1 48 48 H 1.08999 * 109.71041 * 11.26600 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0924 1.2967 0.0000 4 6 3.1573 1.2145 -1.0996 5 7 3.9611 0.0004 -0.9104 6 6 5.0657 0.0006 -1.7473 7 7 5.2477 0.7647 -2.7984 8 7 6.3828 0.4992 -3.3398 9 6 6.9899 -0.4379 -2.6683 10 6 8.3435 -1.0241 -2.9768 11 6 8.1792 -2.2199 -3.9170 12 6 9.5329 -2.8056 -4.2260 13 1 10.4215 -2.3684 -3.7953 14 6 9.6371 -3.8990 -5.0595 15 7 10.8185 -4.4098 -5.3295 16 14 8.1001 -4.6548 -5.8050 17 1 7.8091 -4.0023 -7.1069 18 1 8.3164 -6.1085 -6.0175 19 1 6.9529 -4.4543 -4.8836 20 7 6.1696 -0.7933 -1.6336 21 6 6.4257 -1.8108 -0.6112 22 6 7.1844 -1.1795 0.5578 23 6 8.5936 -1.6995 0.8488 24 6 7.4380 -2.0519 1.7890 25 6 3.1575 -1.2138 -1.1000 26 6 2.0926 -1.2964 -0.0006 27 1 -0.5401 0.9352 -0.0004 28 1 -0.5399 -0.9354 0.0004 29 1 2.5736 1.4356 0.9682 30 1 1.4211 2.1317 -0.2001 31 1 3.8038 2.0905 -1.0458 32 1 2.6715 1.1806 -2.0747 33 1 8.9660 -0.2683 -3.4557 34 1 8.8170 -1.3518 -2.0514 35 1 7.5567 -2.9757 -3.4382 36 1 7.7057 -1.8921 -4.8425 37 1 10.8918 -5.1788 -5.9161 38 1 7.0236 -2.6148 -1.0405 39 1 5.4780 -2.2137 -0.2541 40 1 6.9953 -0.1188 0.7230 41 1 8.9804 -2.4913 0.2071 42 1 9.3314 -0.9811 1.2057 43 1 7.4163 -1.5651 2.7640 44 1 7.0640 -3.0755 1.7661 45 1 2.6715 -1.1794 -2.0750 46 1 3.8041 -2.0896 -1.0466 47 1 2.5737 -1.4358 0.9674 48 1 1.4210 -2.1311 -0.2014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351360186.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:22 Heat of formation + Delta-G solvation = 104.673374 kcal Electronic energy + Delta-G solvation = -27087.067977 eV Core-core repulsion = 23564.698649 eV Total energy + Delta-G solvation = -3522.369329 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.08999 -40.12085 -38.71663 -36.33100 -35.83014 -35.11555 -33.72300 -32.28534 -30.83053 -29.13968 -28.23992 -27.17828 -24.72984 -23.75406 -23.33413 -23.23364 -22.31394 -21.72379 -21.31242 -19.34090 -19.03495 -18.39574 -17.47357 -17.34417 -16.36016 -16.17834 -16.04686 -15.70873 -15.62348 -15.20312 -15.12224 -15.08344 -14.72782 -14.50070 -14.28550 -14.00691 -13.56414 -13.40247 -13.03824 -12.99874 -12.93905 -12.74776 -12.38778 -12.32486 -12.25592 -12.09468 -11.93001 -11.81500 -11.62075 -11.55290 -11.44266 -11.43010 -11.08502 -10.93858 -10.79322 -10.67373 -9.95340 -9.38691 -8.31384 -6.35160 0.69461 1.15478 1.31476 1.34416 1.35885 1.43255 1.72804 2.32036 2.53362 2.80139 3.03836 3.37119 3.55831 3.63788 3.68277 3.70254 3.89112 3.93729 4.05015 4.11926 4.13807 4.16581 4.18013 4.31210 4.37442 4.48933 4.50419 4.53167 4.62101 4.69661 4.77339 4.78261 4.80597 4.90621 4.97348 5.00991 5.02210 5.09194 5.11829 5.16509 5.24584 5.26487 5.38842 5.44678 5.58775 5.64389 5.73591 5.94756 6.16103 6.23505 6.71656 7.29238 7.69195 8.84626 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.013789 B = 0.003765 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.190047 B = 7436.094809 C = 8130.790723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.142 4.142 3 C -0.073 4.073 4 C 0.078 3.922 5 N -0.444 5.444 6 C 0.351 3.649 7 N -0.356 5.356 8 N -0.329 5.329 9 C 0.200 3.800 10 C -0.009 4.009 11 C 0.006 3.994 12 C -0.525 4.525 13 H 0.048 0.952 14 C 0.017 3.983 15 N -0.942 5.942 16 Si 0.938 3.062 17 H -0.275 1.275 18 H -0.278 1.278 19 H -0.254 1.254 20 N -0.465 5.465 21 C 0.136 3.864 22 C -0.177 4.177 23 C -0.187 4.187 24 C -0.140 4.140 25 C 0.057 3.943 26 C -0.071 4.071 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.020 0.980 36 H 0.007 0.993 37 H 0.268 0.732 38 H 0.096 0.904 39 H 0.119 0.881 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.036 0.964 46 H 0.081 0.919 47 H 0.093 0.907 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.139 5.147 19.061 28.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.142 4.142 3 C -0.110 4.110 4 C -0.049 4.049 5 N -0.169 5.169 6 C -0.006 4.006 7 N -0.200 5.200 8 N -0.167 5.167 9 C -0.069 4.069 10 C -0.049 4.049 11 C -0.032 4.032 12 C -0.563 4.563 13 H 0.066 0.934 14 C -0.181 4.181 15 N -0.583 5.583 16 Si 0.763 3.237 17 H -0.201 1.201 18 H -0.203 1.203 19 H -0.178 1.178 20 N -0.159 5.159 21 C 0.014 3.986 22 C -0.196 4.196 23 C -0.224 4.224 24 C -0.177 4.177 25 C -0.069 4.069 26 C -0.108 4.108 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.106 0.894 30 H 0.113 0.887 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.038 0.962 36 H 0.025 0.975 37 H 0.077 0.923 38 H 0.115 0.885 39 H 0.137 0.863 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.055 0.945 46 H 0.100 0.900 47 H 0.111 0.889 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -20.180 6.047 18.406 27.974 hybrid contribution 0.075 -1.164 -0.767 1.396 sum -20.105 4.883 17.639 27.188 Atomic orbital electron populations 1.23814 0.94530 1.02952 1.00692 1.22010 0.95415 0.95631 1.01183 1.20899 0.95684 0.95969 0.98477 1.22052 0.94519 0.89582 0.98752 1.58674 1.05582 1.06174 1.46441 1.22734 0.90710 0.93448 0.93718 1.74450 1.12601 1.25999 1.06978 1.73914 1.02865 1.15372 1.24590 1.25191 0.97368 0.96533 0.87781 1.19933 0.86165 0.97618 1.01145 1.19369 0.95969 0.93215 0.94668 1.21271 0.92896 1.13352 1.28770 0.93402 1.25783 0.98691 0.97235 0.96434 1.70024 1.25144 1.24952 1.38143 0.85843 0.80594 0.77820 0.79466 1.20073 1.20314 1.17806 1.46295 1.13910 1.31434 1.24218 1.21765 1.03061 0.88064 0.85680 1.22361 1.00075 0.99659 0.97526 1.23200 0.91312 1.03795 1.04070 1.23062 1.00311 1.00630 0.93728 1.22397 0.95182 0.90177 0.99182 1.20869 0.95564 0.95905 0.98468 0.87450 0.87364 0.89441 0.88684 0.90714 0.94094 0.89662 0.88899 0.96186 0.97469 0.92340 0.88539 0.86332 0.88516 0.88779 0.88311 0.86917 0.87030 0.94543 0.90038 0.88854 0.88558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 14.01 67.78 0.95 -1.13 16 2 C -0.14 -1.95 5.42 -16.03 -0.09 -2.04 16 3 C -0.07 -1.06 6.21 30.18 0.19 -0.87 16 4 C 0.08 1.69 4.92 86.41 0.42 2.11 16 5 N -0.44 -10.48 4.59 -705.26 -3.23 -13.72 16 6 C 0.35 11.15 6.88 260.11 1.79 12.94 16 7 N -0.36 -13.89 11.41 -58.00 -0.66 -14.55 16 8 N -0.33 -14.10 12.18 -49.54 -0.60 -14.70 16 9 C 0.20 7.71 7.32 137.64 1.01 8.71 16 10 C -0.01 -0.35 5.40 29.85 0.16 -0.19 16 11 C 0.01 0.30 4.02 29.85 0.12 0.42 16 12 C -0.52 -29.23 9.66 25.60 0.25 -28.99 16 13 H 0.05 2.87 7.99 -2.91 -0.02 2.84 16 14 C 0.02 0.95 5.47 84.66 0.46 1.41 16 15 N -0.94 -57.64 13.96 21.45 0.30 -57.34 16 16 Si 0.94 44.29 27.47 68.60 1.88 46.17 16 17 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 19 H -0.25 -11.27 6.54 99.48 0.65 -10.62 16 20 N -0.47 -14.61 2.81 -514.86 -1.45 -16.06 16 21 C 0.14 3.20 6.01 86.38 0.52 3.72 16 22 C -0.18 -3.70 6.01 -10.79 -0.06 -3.76 16 23 C -0.19 -3.82 10.18 30.62 0.31 -3.51 16 24 C -0.14 -2.13 10.26 30.62 0.31 -1.82 16 25 C 0.06 1.12 5.26 86.41 0.45 1.57 16 26 C -0.07 -0.93 6.21 30.18 0.19 -0.74 16 27 H 0.11 1.03 7.95 -2.91 -0.02 1.01 16 28 H 0.11 1.01 7.95 -2.91 -0.02 0.99 16 29 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.09 1.10 7.93 -2.39 -0.02 1.08 16 31 H 0.07 1.80 8.00 -2.39 -0.02 1.78 16 32 H 0.04 1.00 8.10 -2.39 -0.02 0.98 16 33 H 0.08 3.51 8.14 -2.39 -0.02 3.50 16 34 H 0.09 3.36 7.98 -2.39 -0.02 3.34 16 35 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 36 H 0.01 0.35 7.57 -2.39 -0.02 0.33 16 37 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 38 H 0.10 2.43 7.72 -2.39 -0.02 2.41 16 39 H 0.12 2.20 6.07 -2.39 -0.01 2.19 16 40 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.09 2.16 8.03 -2.38 -0.02 2.14 16 42 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.04 0.82 8.10 -2.39 -0.02 0.80 16 46 H 0.08 1.53 6.04 -2.39 -0.01 1.52 16 47 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.10 0.97 7.93 -2.39 -0.02 0.95 16 Total: -1.00 -70.74 386.26 4.10 -66.64 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.87 Total: 15.71 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: 6.99 Total: -12.16 kcal Atomic # 7 Polarization: -110.72 SS G_CDS: -5.65 Total: -116.36 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.17 kcal Total: -70.74 4.10 -66.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351360186.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.313 kcal (2) G-P(sol) polarization free energy of solvation -70.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds