Wall clock time and date at job start Tue Mar 31 2020 11:14:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31005 * 1
3 3 C 1.51442 * 121.10494 * 2 1
4 4 C 1.53291 * 108.23983 * 229.04716 * 3 2 1
5 5 N 1.46831 * 109.40261 * 306.20788 * 4 3 2
6 6 C 1.38582 * 111.00208 * 189.75415 * 5 4 3
7 7 N 1.31216 * 126.47144 * 344.03384 * 6 5 4
8 8 N 1.28526 * 109.85758 * 179.97438 * 7 6 5
9 9 C 1.30294 * 110.05738 * 359.71879 * 8 7 6
10 10 C 1.50699 * 126.35344 * 180.30784 * 9 8 7
11 11 C 1.53000 * 109.47147 * 270.16076 * 10 9 8
12 12 C 1.50697 * 109.46833 * 179.97438 * 11 10 9
13 13 H 1.07995 * 120.00449 * 359.97438 * 12 11 10
14 14 C 1.37886 * 120.00142 * 180.02562 * 12 11 10
15 15 N 1.31513 * 119.99978 * 179.97438 * 14 12 11
16 16 Si 1.86797 * 119.99497 * 359.97438 * 14 12 11
17 17 H 1.48503 * 109.47290 * 90.00230 * 16 14 12
18 18 H 1.48498 * 109.47152 * 209.99684 * 16 14 12
19 19 H 1.48501 * 109.47527 * 330.00223 * 16 14 12
20 20 N 1.36453 * 126.47173 * 164.01109 * 6 5 4
21 21 C 1.46498 * 127.13650 * 0.02562 * 20 6 5
22 22 C 1.52996 * 109.46776 * 268.20755 * 21 20 6
23 23 C 1.53001 * 117.50134 * 243.28698 * 22 21 20
24 24 C 1.53012 * 117.49663 * 174.62822 * 22 21 20
25 25 C 1.46827 * 111.56429 * 65.38536 * 5 4 3
26 26 C 1.51425 * 121.11541 * 180.02562 * 2 1 3
27 27 H 1.07998 * 120.00477 * 0.02562 * 1 2 3
28 28 H 1.08005 * 119.99404 * 180.02562 * 1 2 3
29 29 H 1.09004 * 109.70544 * 109.36038 * 3 2 1
30 30 H 1.08996 * 109.74221 * 348.75496 * 3 2 1
31 31 H 1.09004 * 109.48418 * 186.22883 * 4 3 2
32 32 H 1.09000 * 109.49449 * 66.19595 * 4 3 2
33 33 H 1.08999 * 109.46608 * 30.15798 * 10 9 8
34 34 H 1.09002 * 109.47223 * 150.15699 * 10 9 8
35 35 H 1.08999 * 109.47139 * 299.99396 * 11 10 9
36 36 H 1.09003 * 109.46877 * 59.99901 * 11 10 9
37 37 H 0.97000 * 119.99613 * 180.02562 * 15 14 12
38 38 H 1.09001 * 109.47347 * 148.21159 * 21 20 6
39 39 H 1.08997 * 109.47149 * 28.20854 * 21 20 6
40 40 H 1.09002 * 115.55351 * 28.96352 * 22 21 20
41 41 H 1.09009 * 117.49688 * 0.02562 * 23 22 21
42 42 H 1.08996 * 117.50028 * 145.02040 * 23 22 21
43 43 H 1.09002 * 117.49919 * 214.97752 * 24 22 21
44 44 H 1.08996 * 117.49679 * 359.97438 * 24 22 21
45 45 H 1.09002 * 109.48271 * 54.59325 * 25 5 4
46 46 H 1.08996 * 109.48385 * 174.63226 * 25 5 4
47 47 H 1.08996 * 109.71257 * 250.64225 * 26 2 1
48 48 H 1.08999 * 109.71041 * 11.26600 * 26 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0924 1.2967 0.0000
4 6 3.1573 1.2145 -1.0996
5 7 3.9611 0.0004 -0.9104
6 6 5.0657 0.0006 -1.7473
7 7 5.2477 0.7647 -2.7984
8 7 6.3828 0.4992 -3.3398
9 6 6.9899 -0.4379 -2.6683
10 6 8.3435 -1.0241 -2.9768
11 6 8.1792 -2.2199 -3.9170
12 6 9.5329 -2.8056 -4.2260
13 1 10.4215 -2.3684 -3.7953
14 6 9.6371 -3.8990 -5.0595
15 7 10.8185 -4.4098 -5.3295
16 14 8.1001 -4.6548 -5.8050
17 1 7.8091 -4.0023 -7.1069
18 1 8.3164 -6.1085 -6.0175
19 1 6.9529 -4.4543 -4.8836
20 7 6.1696 -0.7933 -1.6336
21 6 6.4257 -1.8108 -0.6112
22 6 7.1844 -1.1795 0.5578
23 6 8.5936 -1.6995 0.8488
24 6 7.4380 -2.0519 1.7890
25 6 3.1575 -1.2138 -1.1000
26 6 2.0926 -1.2964 -0.0006
27 1 -0.5401 0.9352 -0.0004
28 1 -0.5399 -0.9354 0.0004
29 1 2.5736 1.4356 0.9682
30 1 1.4211 2.1317 -0.2001
31 1 3.8038 2.0905 -1.0458
32 1 2.6715 1.1806 -2.0747
33 1 8.9660 -0.2683 -3.4557
34 1 8.8170 -1.3518 -2.0514
35 1 7.5567 -2.9757 -3.4382
36 1 7.7057 -1.8921 -4.8425
37 1 10.8918 -5.1788 -5.9161
38 1 7.0236 -2.6148 -1.0405
39 1 5.4780 -2.2137 -0.2541
40 1 6.9953 -0.1188 0.7230
41 1 8.9804 -2.4913 0.2071
42 1 9.3314 -0.9811 1.2057
43 1 7.4163 -1.5651 2.7640
44 1 7.0640 -3.0755 1.7661
45 1 2.6715 -1.1794 -2.0750
46 1 3.8041 -2.0896 -1.0466
47 1 2.5737 -1.4358 0.9674
48 1 1.4210 -2.1311 -0.2014
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001351360186.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:14:22
Heat of formation + Delta-G solvation = 104.673374 kcal
Electronic energy + Delta-G solvation = -27087.067977 eV
Core-core repulsion = 23564.698649 eV
Total energy + Delta-G solvation = -3522.369329 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 316.196 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-44.08999 -40.12085 -38.71663 -36.33100 -35.83014 -35.11555 -33.72300 -32.28534
-30.83053 -29.13968 -28.23992 -27.17828 -24.72984 -23.75406 -23.33413 -23.23364
-22.31394 -21.72379 -21.31242 -19.34090 -19.03495 -18.39574 -17.47357 -17.34417
-16.36016 -16.17834 -16.04686 -15.70873 -15.62348 -15.20312 -15.12224 -15.08344
-14.72782 -14.50070 -14.28550 -14.00691 -13.56414 -13.40247 -13.03824 -12.99874
-12.93905 -12.74776 -12.38778 -12.32486 -12.25592 -12.09468 -11.93001 -11.81500
-11.62075 -11.55290 -11.44266 -11.43010 -11.08502 -10.93858 -10.79322 -10.67373
-9.95340 -9.38691 -8.31384 -6.35160 0.69461 1.15478 1.31476 1.34416
1.35885 1.43255 1.72804 2.32036 2.53362 2.80139 3.03836 3.37119
3.55831 3.63788 3.68277 3.70254 3.89112 3.93729 4.05015 4.11926
4.13807 4.16581 4.18013 4.31210 4.37442 4.48933 4.50419 4.53167
4.62101 4.69661 4.77339 4.78261 4.80597 4.90621 4.97348 5.00991
5.02210 5.09194 5.11829 5.16509 5.24584 5.26487 5.38842 5.44678
5.58775 5.64389 5.73591 5.94756 6.16103 6.23505 6.71656 7.29238
7.69195 8.84626
Molecular weight = 316.20amu
Principal moments of inertia in cm(-1)
A = 0.013789 B = 0.003765 C = 0.003443
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2030.190047 B = 7436.094809 C = 8130.790723
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C -0.142 4.142
3 C -0.073 4.073
4 C 0.078 3.922
5 N -0.444 5.444
6 C 0.351 3.649
7 N -0.356 5.356
8 N -0.329 5.329
9 C 0.200 3.800
10 C -0.009 4.009
11 C 0.006 3.994
12 C -0.525 4.525
13 H 0.048 0.952
14 C 0.017 3.983
15 N -0.942 5.942
16 Si 0.938 3.062
17 H -0.275 1.275
18 H -0.278 1.278
19 H -0.254 1.254
20 N -0.465 5.465
21 C 0.136 3.864
22 C -0.177 4.177
23 C -0.187 4.187
24 C -0.140 4.140
25 C 0.057 3.943
26 C -0.071 4.071
27 H 0.107 0.893
28 H 0.108 0.892
29 H 0.087 0.913
30 H 0.095 0.905
31 H 0.074 0.926
32 H 0.041 0.959
33 H 0.085 0.915
34 H 0.093 0.907
35 H 0.020 0.980
36 H 0.007 0.993
37 H 0.268 0.732
38 H 0.096 0.904
39 H 0.119 0.881
40 H 0.097 0.903
41 H 0.094 0.906
42 H 0.098 0.902
43 H 0.113 0.887
44 H 0.111 0.889
45 H 0.036 0.964
46 H 0.081 0.919
47 H 0.093 0.907
48 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.139 5.147 19.061 28.203
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C -0.142 4.142
3 C -0.110 4.110
4 C -0.049 4.049
5 N -0.169 5.169
6 C -0.006 4.006
7 N -0.200 5.200
8 N -0.167 5.167
9 C -0.069 4.069
10 C -0.049 4.049
11 C -0.032 4.032
12 C -0.563 4.563
13 H 0.066 0.934
14 C -0.181 4.181
15 N -0.583 5.583
16 Si 0.763 3.237
17 H -0.201 1.201
18 H -0.203 1.203
19 H -0.178 1.178
20 N -0.159 5.159
21 C 0.014 3.986
22 C -0.196 4.196
23 C -0.224 4.224
24 C -0.177 4.177
25 C -0.069 4.069
26 C -0.108 4.108
27 H 0.126 0.874
28 H 0.126 0.874
29 H 0.106 0.894
30 H 0.113 0.887
31 H 0.093 0.907
32 H 0.059 0.941
33 H 0.103 0.897
34 H 0.111 0.889
35 H 0.038 0.962
36 H 0.025 0.975
37 H 0.077 0.923
38 H 0.115 0.885
39 H 0.137 0.863
40 H 0.115 0.885
41 H 0.112 0.888
42 H 0.117 0.883
43 H 0.131 0.869
44 H 0.130 0.870
45 H 0.055 0.945
46 H 0.100 0.900
47 H 0.111 0.889
48 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges -20.180 6.047 18.406 27.974
hybrid contribution 0.075 -1.164 -0.767 1.396
sum -20.105 4.883 17.639 27.188
Atomic orbital electron populations
1.23814 0.94530 1.02952 1.00692 1.22010 0.95415 0.95631 1.01183
1.20899 0.95684 0.95969 0.98477 1.22052 0.94519 0.89582 0.98752
1.58674 1.05582 1.06174 1.46441 1.22734 0.90710 0.93448 0.93718
1.74450 1.12601 1.25999 1.06978 1.73914 1.02865 1.15372 1.24590
1.25191 0.97368 0.96533 0.87781 1.19933 0.86165 0.97618 1.01145
1.19369 0.95969 0.93215 0.94668 1.21271 0.92896 1.13352 1.28770
0.93402 1.25783 0.98691 0.97235 0.96434 1.70024 1.25144 1.24952
1.38143 0.85843 0.80594 0.77820 0.79466 1.20073 1.20314 1.17806
1.46295 1.13910 1.31434 1.24218 1.21765 1.03061 0.88064 0.85680
1.22361 1.00075 0.99659 0.97526 1.23200 0.91312 1.03795 1.04070
1.23062 1.00311 1.00630 0.93728 1.22397 0.95182 0.90177 0.99182
1.20869 0.95564 0.95905 0.98468 0.87450 0.87364 0.89441 0.88684
0.90714 0.94094 0.89662 0.88899 0.96186 0.97469 0.92340 0.88539
0.86332 0.88516 0.88779 0.88311 0.86917 0.87030 0.94543 0.90038
0.88854 0.88558
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.08 14.01 67.78 0.95 -1.13 16
2 C -0.14 -1.95 5.42 -16.03 -0.09 -2.04 16
3 C -0.07 -1.06 6.21 30.18 0.19 -0.87 16
4 C 0.08 1.69 4.92 86.41 0.42 2.11 16
5 N -0.44 -10.48 4.59 -705.26 -3.23 -13.72 16
6 C 0.35 11.15 6.88 260.11 1.79 12.94 16
7 N -0.36 -13.89 11.41 -58.00 -0.66 -14.55 16
8 N -0.33 -14.10 12.18 -49.54 -0.60 -14.70 16
9 C 0.20 7.71 7.32 137.64 1.01 8.71 16
10 C -0.01 -0.35 5.40 29.85 0.16 -0.19 16
11 C 0.01 0.30 4.02 29.85 0.12 0.42 16
12 C -0.52 -29.23 9.66 25.60 0.25 -28.99 16
13 H 0.05 2.87 7.99 -2.91 -0.02 2.84 16
14 C 0.02 0.95 5.47 84.66 0.46 1.41 16
15 N -0.94 -57.64 13.96 21.45 0.30 -57.34 16
16 Si 0.94 44.29 27.47 68.60 1.88 46.17 16
17 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16
18 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16
19 H -0.25 -11.27 6.54 99.48 0.65 -10.62 16
20 N -0.47 -14.61 2.81 -514.86 -1.45 -16.06 16
21 C 0.14 3.20 6.01 86.38 0.52 3.72 16
22 C -0.18 -3.70 6.01 -10.79 -0.06 -3.76 16
23 C -0.19 -3.82 10.18 30.62 0.31 -3.51 16
24 C -0.14 -2.13 10.26 30.62 0.31 -1.82 16
25 C 0.06 1.12 5.26 86.41 0.45 1.57 16
26 C -0.07 -0.93 6.21 30.18 0.19 -0.74 16
27 H 0.11 1.03 7.95 -2.91 -0.02 1.01 16
28 H 0.11 1.01 7.95 -2.91 -0.02 0.99 16
29 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16
30 H 0.09 1.10 7.93 -2.39 -0.02 1.08 16
31 H 0.07 1.80 8.00 -2.39 -0.02 1.78 16
32 H 0.04 1.00 8.10 -2.39 -0.02 0.98 16
33 H 0.08 3.51 8.14 -2.39 -0.02 3.50 16
34 H 0.09 3.36 7.98 -2.39 -0.02 3.34 16
35 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16
36 H 0.01 0.35 7.57 -2.39 -0.02 0.33 16
37 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16
38 H 0.10 2.43 7.72 -2.39 -0.02 2.41 16
39 H 0.12 2.20 6.07 -2.39 -0.01 2.19 16
40 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16
41 H 0.09 2.16 8.03 -2.38 -0.02 2.14 16
42 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16
43 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16
44 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16
45 H 0.04 0.82 8.10 -2.39 -0.02 0.80 16
46 H 0.08 1.53 6.04 -2.39 -0.01 1.52 16
47 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16
48 H 0.10 0.97 7.93 -2.39 -0.02 0.95 16
Total: -1.00 -70.74 386.26 4.10 -66.64
By element:
Atomic # 1 Polarization: 14.84 SS G_CDS: 0.87 Total: 15.71 kcal
Atomic # 6 Polarization: -19.15 SS G_CDS: 6.99 Total: -12.16 kcal
Atomic # 7 Polarization: -110.72 SS G_CDS: -5.65 Total: -116.36 kcal
Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.17 kcal
Total: -70.74 4.10 -66.64 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001351360186.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 171.313 kcal
(2) G-P(sol) polarization free energy of solvation -70.736 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.577 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.639 kcal
(6) G-S(sol) free energy of system = (1) + (5) 104.673 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds