Wall clock time and date at job start Tue Mar 31 2020 11:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50705 * 119.99488 * 2 1 4 4 N 1.46904 * 109.46481 * 126.87987 * 3 2 1 5 5 C 1.38579 * 111.00472 * 52.35889 * 4 3 2 6 6 N 1.31217 * 126.46985 * 244.36859 * 5 4 3 7 7 N 1.28531 * 109.85442 * 179.68922 * 6 5 4 8 8 C 1.30290 * 110.05568 * 0.45633 * 7 6 5 9 9 C 1.50703 * 126.34718 * 179.82060 * 8 7 6 10 10 H 1.09002 * 109.47258 * 179.68549 * 9 8 7 11 11 C 1.52998 * 109.46834 * 299.68653 * 9 8 7 12 12 C 1.52998 * 109.46976 * 59.68501 * 9 8 7 13 13 C 1.50708 * 109.46841 * 175.00166 * 12 9 8 14 14 H 1.07996 * 120.00097 * 359.72015 * 13 12 9 15 15 C 1.37883 * 119.99783 * 180.02562 * 13 12 9 16 16 N 1.31512 * 120.00095 * 359.72465 * 15 13 12 17 17 Si 1.86794 * 119.99772 * 179.72113 * 15 13 12 18 18 H 1.48503 * 109.46841 * 90.00109 * 17 15 13 19 19 H 1.48500 * 109.47296 * 210.00039 * 17 15 13 20 20 H 1.48496 * 109.47333 * 330.00483 * 17 15 13 21 21 N 1.36447 * 126.47085 * 64.32192 * 5 4 3 22 22 C 1.46495 * 127.14303 * 0.06296 * 21 5 4 23 23 C 1.50701 * 109.47380 * 264.32880 * 22 21 5 24 24 C 1.30995 * 120.00319 * 125.71986 * 23 22 21 25 25 C 1.46899 * 111.00132 * 288.39821 * 4 3 2 26 26 C 1.53001 * 117.49863 * 356.37499 * 25 4 3 27 27 C 1.52999 * 117.49896 * 287.71470 * 25 4 3 28 28 H 1.08000 * 120.00503 * 5.25968 * 1 2 3 29 29 H 1.08002 * 119.99798 * 185.26400 * 1 2 3 30 30 H 1.07999 * 119.99975 * 180.02562 * 2 1 3 31 31 H 1.08993 * 109.47054 * 6.87908 * 3 2 1 32 32 H 1.09002 * 109.46614 * 246.87607 * 3 2 1 33 33 H 1.09009 * 109.46656 * 179.97438 * 11 9 8 34 34 H 1.08993 * 109.47401 * 299.99650 * 11 9 8 35 35 H 1.08997 * 109.47484 * 60.00614 * 11 9 8 36 36 H 1.09000 * 109.47506 * 55.00730 * 12 9 8 37 37 H 1.08998 * 109.47784 * 295.00050 * 12 9 8 38 38 H 0.96993 * 119.99995 * 180.02562 * 16 15 13 39 39 H 1.09004 * 109.47277 * 24.32331 * 22 21 5 40 40 H 1.09003 * 109.47729 * 144.32404 * 22 21 5 41 41 H 1.08008 * 119.99461 * 305.72450 * 23 22 21 42 42 H 1.08000 * 119.99872 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.00324 * 0.02562 * 24 23 22 44 44 H 1.08996 * 115.54709 * 142.04088 * 25 4 3 45 45 H 1.09005 * 117.49683 * 359.97438 * 26 25 4 46 46 H 1.08996 * 117.49969 * 145.01362 * 26 25 4 47 47 H 1.08996 * 117.49756 * 214.97409 * 27 25 4 48 48 H 1.08996 * 117.49988 * 0.02562 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 3.0281 1.3136 1.1079 5 6 3.8284 0.1827 1.0783 6 7 3.8715 -0.7662 1.9837 7 7 4.7199 -1.6658 1.6331 8 6 5.2708 -1.3421 0.4976 9 6 6.3168 -2.1329 -0.2452 10 1 6.5795 -1.6126 -1.1663 11 6 7.5625 -2.2798 0.6308 12 6 5.7640 -3.5192 -0.5824 13 6 6.7619 -4.2652 -1.4303 14 1 7.6948 -3.7957 -1.7053 15 6 6.4811 -5.5448 -1.8602 16 7 5.3448 -6.1163 -1.5259 17 14 7.7145 -6.4665 -2.9177 18 1 8.6419 -7.2301 -2.0446 19 1 6.9938 -7.4051 -3.8148 20 1 8.4886 -5.4973 -3.7341 21 7 4.7196 -0.1550 0.1019 22 6 5.0235 0.5984 -1.1173 23 6 4.2027 0.0576 -2.2597 24 6 3.4468 0.8642 -2.9624 25 6 2.3432 1.4403 2.4013 26 6 0.8243 1.6232 2.3815 27 6 1.7326 2.7998 2.7472 28 1 -0.5401 0.9313 -0.0857 29 1 -0.5400 -0.9314 0.0858 30 1 1.8500 -0.9353 -0.0004 31 1 1.3615 2.1299 0.1231 32 1 2.5946 1.4180 -0.9451 33 1 8.3189 -2.8522 0.0936 34 1 7.9563 -1.2923 0.8710 35 1 7.2998 -2.8002 1.5517 36 1 4.8281 -3.4136 -1.1311 37 1 5.5845 -4.0728 0.3391 38 1 5.1474 -7.0166 -1.8280 39 1 4.7834 1.6505 -0.9636 40 1 6.0832 0.4980 -1.3518 41 1 4.2378 -0.9950 -2.4989 42 1 2.8583 0.4765 -3.7808 43 1 3.4119 1.9168 -2.7234 44 1 2.7693 0.8575 3.2179 45 1 0.3333 1.6500 1.4087 46 1 0.2512 1.1610 3.1852 47 1 1.7566 3.1113 3.7914 48 1 1.8386 3.6001 2.0149 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351573686.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:41 Heat of formation + Delta-G solvation = 164.827865 kcal Electronic energy + Delta-G solvation = -27623.835212 eV Core-core repulsion = 24104.074378 eV Total energy + Delta-G solvation = -3519.760834 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.67841 -39.42338 -36.29159 -35.34083 -34.47977 -33.20302 -32.59568 -31.96904 -28.61667 -26.98657 -26.73697 -25.89127 -24.01179 -22.64128 -22.44208 -21.58193 -20.92315 -20.29504 -19.61066 -18.72220 -17.28503 -16.87363 -16.59446 -15.98718 -15.59254 -15.19611 -14.60623 -14.42414 -14.38437 -13.88533 -13.72171 -13.49178 -13.21817 -13.07125 -12.56144 -12.37403 -12.24099 -11.96490 -11.77276 -11.60991 -11.35696 -11.17714 -11.08081 -10.96482 -10.91261 -10.73727 -10.56192 -10.46247 -10.17523 -9.92895 -9.83416 -9.67957 -9.60806 -9.41095 -9.18462 -9.10274 -8.37273 -7.87333 -6.01162 -4.04717 1.79775 1.99497 2.26229 2.65072 3.30679 3.32565 3.37597 3.39351 3.55620 3.90399 4.42992 4.53306 4.58800 4.65797 4.70681 4.78612 4.84529 4.97630 5.03759 5.06103 5.16037 5.30113 5.34472 5.39643 5.47339 5.48574 5.51807 5.69868 5.73636 5.82142 5.88470 5.96674 6.06268 6.14183 6.25465 6.28090 6.38319 6.42593 6.48938 6.53421 6.70421 6.72505 6.84610 6.93120 7.06627 7.43763 7.61628 7.78562 7.98437 8.34437 9.00970 9.26843 9.58915 11.09823 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.017726 B = 0.003691 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.252472 B = 7583.610214 C = 7830.662646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.177 4.177 3 C 0.065 3.935 4 N -0.417 5.417 5 C 0.342 3.658 6 N -0.320 5.320 7 N -0.284 5.284 8 C 0.215 3.785 9 C -0.001 4.001 10 H 0.071 0.929 11 C -0.126 4.126 12 C 0.040 3.960 13 C -0.520 4.520 14 H 0.058 0.942 15 C 0.060 3.940 16 N -0.890 5.890 17 Si 0.890 3.110 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.274 1.274 21 N -0.477 5.477 22 C 0.137 3.863 23 C -0.171 4.171 24 C -0.173 4.173 25 C 0.035 3.965 26 C -0.208 4.208 27 C -0.171 4.171 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.031 0.969 35 H 0.060 0.940 36 H 0.012 0.988 37 H 0.032 0.968 38 H 0.261 0.739 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.126 0.874 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.135 0.865 45 H 0.109 0.891 46 H 0.097 0.903 47 H 0.100 0.900 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.359 19.785 0.817 21.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.196 4.196 3 C -0.061 4.061 4 N -0.138 5.138 5 C -0.014 4.014 6 N -0.163 5.163 7 N -0.121 5.121 8 C -0.052 4.052 9 C -0.023 4.023 10 H 0.090 0.910 11 C -0.184 4.184 12 C 0.002 3.998 13 C -0.558 4.558 14 H 0.076 0.924 15 C -0.142 4.142 16 N -0.529 5.529 17 Si 0.718 3.282 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.199 1.199 21 N -0.171 5.171 22 C 0.014 3.986 23 C -0.190 4.190 24 C -0.211 4.211 25 C -0.074 4.074 26 C -0.246 4.246 27 C -0.209 4.209 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.128 0.872 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.093 0.907 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.030 0.970 37 H 0.050 0.950 38 H 0.071 0.929 39 H 0.117 0.883 40 H 0.123 0.877 41 H 0.144 0.856 42 H 0.125 0.875 43 H 0.117 0.883 44 H 0.153 0.847 45 H 0.127 0.873 46 H 0.116 0.884 47 H 0.118 0.882 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.445 19.285 2.014 20.770 hybrid contribution 0.319 -0.477 -1.805 1.894 sum -7.126 18.807 0.209 20.113 Atomic orbital electron populations 1.23778 0.95587 1.01882 1.00213 1.23501 0.96824 0.99065 1.00244 1.21867 0.94116 0.95937 0.94168 1.58703 1.20139 1.30462 1.04460 1.22180 0.95751 0.93860 0.89659 1.74552 1.18000 0.99376 1.24411 1.74018 1.07851 1.19304 1.10941 1.25572 1.00018 0.84979 0.94658 1.19979 0.90081 0.97254 0.94941 0.91042 1.21680 0.96752 0.99783 1.00223 1.19085 0.95802 0.87393 0.97479 1.21145 1.03402 0.99398 1.31892 0.92354 1.24992 0.95272 0.97603 0.96326 1.69978 1.22932 1.14498 1.45508 0.86623 0.81321 0.79839 0.80387 1.20573 1.21319 1.19887 1.46221 1.32051 1.20226 1.18619 1.20933 1.01315 0.95418 0.80935 1.23323 0.97784 1.01700 0.96150 1.23880 0.97931 0.99251 1.00006 1.22482 0.92949 1.00718 0.91236 1.23812 0.93737 1.02760 1.04264 1.23161 1.03383 0.91918 1.02445 0.88433 0.88132 0.87213 0.88832 0.88601 0.90710 0.94958 0.92058 0.96954 0.95010 0.92950 0.88330 0.87702 0.85600 0.87532 0.88312 0.84696 0.87312 0.88441 0.88205 0.88598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 12.57 29.01 0.36 -1.50 16 2 C -0.18 -2.26 7.88 -36.02 -0.28 -2.54 16 3 C 0.07 0.72 5.28 -4.97 -0.03 0.70 16 4 N -0.42 -5.49 4.90 -168.30 -0.82 -6.32 16 5 C 0.34 5.69 5.52 -318.89 -1.76 3.93 16 6 N -0.32 -6.38 10.82 30.31 0.33 -6.05 16 7 N -0.28 -6.24 12.18 32.99 0.40 -5.84 16 8 C 0.21 4.25 6.58 -154.01 -1.01 3.24 16 9 C 0.00 -0.03 2.71 -91.77 -0.25 -0.28 16 10 H 0.07 1.33 7.09 -51.93 -0.37 0.96 16 11 C -0.13 -2.39 8.99 37.16 0.33 -2.06 16 12 C 0.04 1.03 4.43 -27.88 -0.12 0.90 16 13 C -0.52 -13.98 8.40 -34.43 -0.29 -14.27 16 14 H 0.06 1.49 7.07 -52.49 -0.37 1.12 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 17 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 N -0.48 -7.78 2.79 -115.37 -0.32 -8.10 16 22 C 0.14 1.68 5.41 -5.20 -0.03 1.65 16 23 C -0.17 -2.07 9.36 -36.02 -0.34 -2.40 16 24 C -0.17 -1.63 12.47 29.02 0.36 -1.27 16 25 C 0.03 0.43 5.59 -67.71 -0.38 0.05 16 26 C -0.21 -2.05 8.54 -26.69 -0.23 -2.27 16 27 C -0.17 -1.56 10.21 -26.69 -0.27 -1.83 16 28 H 0.10 0.80 7.06 -52.49 -0.37 0.43 16 29 H 0.10 1.08 8.06 -52.49 -0.42 0.65 16 30 H 0.11 1.86 7.37 -52.49 -0.39 1.48 16 31 H 0.09 0.84 5.91 -51.93 -0.31 0.53 16 32 H 0.10 1.00 3.44 -51.93 -0.18 0.82 16 33 H 0.07 1.42 6.95 -51.92 -0.36 1.06 16 34 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.10 1.01 7.36 -51.93 -0.38 0.63 16 40 H 0.10 1.19 7.49 -51.93 -0.39 0.80 16 41 H 0.13 1.87 8.06 -52.48 -0.42 1.45 16 42 H 0.11 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.10 0.73 7.36 -52.49 -0.39 0.35 16 44 H 0.14 1.95 7.11 -51.93 -0.37 1.58 16 45 H 0.11 1.00 3.19 -51.93 -0.17 0.83 16 46 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 48 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 381.10 15.07 5.74 5.74 Total: -1.00 -31.97 381.10 -10.38 -42.35 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -7.40 Total: 4.31 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -4.03 Total: -16.39 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: 0.32 Total: -52.11 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.97 -10.38 -42.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351573686.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.179 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds