Wall clock time and date at job start Tue Mar 31 2020 11:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50705 * 119.99488 * 2 1 4 4 N 1.46904 * 109.46481 * 126.87987 * 3 2 1 5 5 C 1.38579 * 111.00472 * 52.35889 * 4 3 2 6 6 N 1.31217 * 126.46985 * 244.36859 * 5 4 3 7 7 N 1.28531 * 109.85442 * 179.68922 * 6 5 4 8 8 C 1.30290 * 110.05568 * 0.45633 * 7 6 5 9 9 C 1.50703 * 126.34718 * 179.82060 * 8 7 6 10 10 H 1.09002 * 109.47258 * 179.68549 * 9 8 7 11 11 C 1.52998 * 109.46834 * 299.68653 * 9 8 7 12 12 C 1.52998 * 109.46976 * 59.68501 * 9 8 7 13 13 C 1.50708 * 109.46841 * 175.00166 * 12 9 8 14 14 H 1.07996 * 120.00097 * 359.72015 * 13 12 9 15 15 C 1.37883 * 119.99783 * 180.02562 * 13 12 9 16 16 N 1.31512 * 120.00095 * 359.72465 * 15 13 12 17 17 Si 1.86794 * 119.99772 * 179.72113 * 15 13 12 18 18 H 1.48503 * 109.46841 * 90.00109 * 17 15 13 19 19 H 1.48500 * 109.47296 * 210.00039 * 17 15 13 20 20 H 1.48496 * 109.47333 * 330.00483 * 17 15 13 21 21 N 1.36447 * 126.47085 * 64.32192 * 5 4 3 22 22 C 1.46495 * 127.14303 * 0.06296 * 21 5 4 23 23 C 1.50701 * 109.47380 * 264.32880 * 22 21 5 24 24 C 1.30995 * 120.00319 * 125.71986 * 23 22 21 25 25 C 1.46899 * 111.00132 * 288.39821 * 4 3 2 26 26 C 1.53001 * 117.49863 * 356.37499 * 25 4 3 27 27 C 1.52999 * 117.49896 * 287.71470 * 25 4 3 28 28 H 1.08000 * 120.00503 * 5.25968 * 1 2 3 29 29 H 1.08002 * 119.99798 * 185.26400 * 1 2 3 30 30 H 1.07999 * 119.99975 * 180.02562 * 2 1 3 31 31 H 1.08993 * 109.47054 * 6.87908 * 3 2 1 32 32 H 1.09002 * 109.46614 * 246.87607 * 3 2 1 33 33 H 1.09009 * 109.46656 * 179.97438 * 11 9 8 34 34 H 1.08993 * 109.47401 * 299.99650 * 11 9 8 35 35 H 1.08997 * 109.47484 * 60.00614 * 11 9 8 36 36 H 1.09000 * 109.47506 * 55.00730 * 12 9 8 37 37 H 1.08998 * 109.47784 * 295.00050 * 12 9 8 38 38 H 0.96993 * 119.99995 * 180.02562 * 16 15 13 39 39 H 1.09004 * 109.47277 * 24.32331 * 22 21 5 40 40 H 1.09003 * 109.47729 * 144.32404 * 22 21 5 41 41 H 1.08008 * 119.99461 * 305.72450 * 23 22 21 42 42 H 1.08000 * 119.99872 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.00324 * 0.02562 * 24 23 22 44 44 H 1.08996 * 115.54709 * 142.04088 * 25 4 3 45 45 H 1.09005 * 117.49683 * 359.97438 * 26 25 4 46 46 H 1.08996 * 117.49969 * 145.01362 * 26 25 4 47 47 H 1.08996 * 117.49756 * 214.97409 * 27 25 4 48 48 H 1.08996 * 117.49988 * 0.02562 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 3.0281 1.3136 1.1079 5 6 3.8284 0.1827 1.0783 6 7 3.8715 -0.7662 1.9837 7 7 4.7199 -1.6658 1.6331 8 6 5.2708 -1.3421 0.4976 9 6 6.3168 -2.1329 -0.2452 10 1 6.5795 -1.6126 -1.1663 11 6 7.5625 -2.2798 0.6308 12 6 5.7640 -3.5192 -0.5824 13 6 6.7619 -4.2652 -1.4303 14 1 7.6948 -3.7957 -1.7053 15 6 6.4811 -5.5448 -1.8602 16 7 5.3448 -6.1163 -1.5259 17 14 7.7145 -6.4665 -2.9177 18 1 8.6419 -7.2301 -2.0446 19 1 6.9938 -7.4051 -3.8148 20 1 8.4886 -5.4973 -3.7341 21 7 4.7196 -0.1550 0.1019 22 6 5.0235 0.5984 -1.1173 23 6 4.2027 0.0576 -2.2597 24 6 3.4468 0.8642 -2.9624 25 6 2.3432 1.4403 2.4013 26 6 0.8243 1.6232 2.3815 27 6 1.7326 2.7998 2.7472 28 1 -0.5401 0.9313 -0.0857 29 1 -0.5400 -0.9314 0.0858 30 1 1.8500 -0.9353 -0.0004 31 1 1.3615 2.1299 0.1231 32 1 2.5946 1.4180 -0.9451 33 1 8.3189 -2.8522 0.0936 34 1 7.9563 -1.2923 0.8710 35 1 7.2998 -2.8002 1.5517 36 1 4.8281 -3.4136 -1.1311 37 1 5.5845 -4.0728 0.3391 38 1 5.1474 -7.0166 -1.8280 39 1 4.7834 1.6505 -0.9636 40 1 6.0832 0.4980 -1.3518 41 1 4.2378 -0.9950 -2.4989 42 1 2.8583 0.4765 -3.7808 43 1 3.4119 1.9168 -2.7234 44 1 2.7693 0.8575 3.2179 45 1 0.3333 1.6500 1.4087 46 1 0.2512 1.1610 3.1852 47 1 1.7566 3.1113 3.7914 48 1 1.8386 3.6001 2.0149 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351573686.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:40 Heat of formation + Delta-G solvation = 147.456859 kcal Electronic energy + Delta-G solvation = -27624.588476 eV Core-core repulsion = 24104.074378 eV Total energy + Delta-G solvation = -3520.514098 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.05377 -40.39486 -37.45219 -36.97436 -35.45336 -34.48033 -34.11365 -33.40248 -30.08148 -28.87716 -27.80398 -26.92077 -25.79799 -24.07295 -23.23327 -22.94478 -22.00773 -21.32730 -20.77678 -20.01340 -18.67728 -18.30362 -17.87067 -17.41860 -16.73051 -16.48742 -16.27461 -15.62460 -15.36712 -15.06946 -14.92080 -14.78963 -14.57100 -14.27501 -13.99889 -13.69799 -13.47531 -13.16038 -13.01687 -12.80672 -12.78481 -12.69439 -12.50830 -12.39085 -12.28299 -12.09045 -11.96389 -11.88694 -11.55194 -11.36971 -11.27485 -11.13656 -11.08467 -10.57974 -10.56375 -10.46463 -10.33212 -9.17652 -8.17575 -6.29537 0.68361 0.96462 1.16200 1.42145 1.44131 1.54079 1.55605 1.86918 2.42349 2.56609 3.02117 3.16404 3.43559 3.56954 3.70459 3.77390 3.80206 3.90217 3.96261 4.03400 4.11956 4.18118 4.24215 4.38973 4.43461 4.50525 4.51545 4.58956 4.64641 4.76970 4.83269 4.88953 4.95394 5.04224 5.07776 5.15373 5.17692 5.26927 5.34504 5.38379 5.43412 5.49749 5.53895 5.60616 5.64393 5.69230 5.78617 5.82239 6.17694 6.22052 6.86139 7.39748 7.82234 8.94927 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.017726 B = 0.003691 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.252472 B = 7583.610214 C = 7830.662646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.201 4.201 3 C 0.070 3.930 4 N -0.407 5.407 5 C 0.363 3.637 6 N -0.360 5.360 7 N -0.329 5.329 8 C 0.200 3.800 9 C 0.010 3.990 10 H 0.092 0.908 11 C -0.118 4.118 12 C 0.055 3.945 13 C -0.528 4.528 14 H 0.076 0.924 15 C -0.001 4.001 16 N -0.937 5.937 17 Si 0.966 3.034 18 H -0.274 1.274 19 H -0.288 1.288 20 H -0.254 1.254 21 N -0.471 5.471 22 C 0.132 3.868 23 C -0.203 4.203 24 C -0.137 4.137 25 C -0.004 4.004 26 C -0.198 4.198 27 C -0.140 4.140 28 H 0.137 0.863 29 H 0.092 0.908 30 H 0.055 0.945 31 H 0.130 0.870 32 H 0.104 0.896 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.039 0.961 36 H -0.024 1.024 37 H -0.013 1.013 38 H 0.261 0.739 39 H 0.129 0.871 40 H 0.114 0.886 41 H 0.085 0.915 42 H 0.113 0.887 43 H 0.133 0.867 44 H 0.103 0.897 45 H 0.121 0.879 46 H 0.097 0.903 47 H 0.112 0.888 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.615 23.747 -0.888 24.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.221 4.221 3 C -0.056 4.056 4 N -0.128 5.128 5 C 0.006 3.994 6 N -0.203 5.203 7 N -0.167 5.167 8 C -0.069 4.069 9 C -0.011 4.011 10 H 0.110 0.890 11 C -0.176 4.176 12 C 0.017 3.983 13 C -0.566 4.566 14 H 0.094 0.906 15 C -0.199 4.199 16 N -0.578 5.578 17 Si 0.790 3.210 18 H -0.200 1.200 19 H -0.214 1.214 20 H -0.178 1.178 21 N -0.165 5.165 22 C 0.012 3.988 23 C -0.222 4.222 24 C -0.174 4.174 25 C -0.113 4.113 26 C -0.236 4.236 27 C -0.178 4.178 28 H 0.155 0.845 29 H 0.111 0.889 30 H 0.073 0.927 31 H 0.147 0.853 32 H 0.122 0.878 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.058 0.942 36 H -0.006 1.006 37 H 0.005 0.995 38 H 0.070 0.930 39 H 0.147 0.853 40 H 0.132 0.868 41 H 0.103 0.897 42 H 0.131 0.869 43 H 0.151 0.849 44 H 0.121 0.879 45 H 0.139 0.861 46 H 0.115 0.885 47 H 0.130 0.870 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.693 23.279 0.299 24.519 hybrid contribution 0.202 -1.632 -1.265 2.075 sum -7.491 21.647 -0.967 22.927 Atomic orbital electron populations 1.24014 0.94721 1.03356 0.96945 1.23258 0.97539 0.97882 1.03439 1.22011 0.94118 0.95821 0.93612 1.58934 1.20537 1.27636 1.05692 1.22560 0.94953 0.93531 0.88343 1.74437 1.18873 1.00495 1.26525 1.73892 1.09140 1.20976 1.12647 1.25239 1.00517 0.86565 0.94591 1.19706 0.90632 0.94451 0.96263 0.89014 1.21593 0.95936 1.01264 0.98836 1.18793 0.94509 0.90294 0.94677 1.21572 1.03945 0.99696 1.31347 0.90568 1.26011 0.97219 0.98833 0.97814 1.70157 1.25436 1.14943 1.47247 0.85430 0.78598 0.78464 0.78469 1.19989 1.21354 1.17803 1.46349 1.31208 1.19350 1.19577 1.21299 1.02086 0.96267 0.79190 1.23011 1.00905 1.00225 0.98081 1.24166 0.94679 1.00419 0.98162 1.22487 0.94800 1.03792 0.90184 1.23865 0.91980 1.02854 1.04929 1.23272 1.00034 0.90725 1.03756 0.84516 0.88911 0.92661 0.85258 0.87802 0.90678 0.91888 0.94215 1.00606 0.99503 0.93010 0.85271 0.86817 0.89698 0.86884 0.84908 0.87884 0.86096 0.88460 0.87005 0.86619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 12.57 67.78 0.85 -2.07 16 2 C -0.20 -5.05 7.88 25.65 0.20 -4.85 16 3 C 0.07 1.35 5.28 85.56 0.45 1.80 16 4 N -0.41 -10.15 4.90 -686.39 -3.36 -13.51 16 5 C 0.36 12.42 5.52 260.12 1.44 13.85 16 6 N -0.36 -15.40 10.82 -58.01 -0.63 -16.03 16 7 N -0.33 -15.69 12.18 -49.53 -0.60 -16.29 16 8 C 0.20 8.41 6.58 137.64 0.91 9.32 16 9 C 0.01 0.44 2.71 -11.54 -0.03 0.41 16 10 H 0.09 3.48 7.09 -2.39 -0.02 3.46 16 11 C -0.12 -4.59 8.99 71.98 0.65 -3.95 16 12 C 0.06 3.04 4.43 29.85 0.13 3.17 16 13 C -0.53 -29.30 8.40 25.60 0.22 -29.09 16 14 H 0.08 3.88 7.07 -2.91 -0.02 3.86 16 15 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 16 N -0.94 -58.68 13.29 21.45 0.28 -58.39 16 17 Si 0.97 43.90 29.54 68.60 2.03 45.93 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 20 H -0.25 -10.68 7.11 99.48 0.71 -9.97 16 21 N -0.47 -15.76 2.79 -518.91 -1.45 -17.21 16 22 C 0.13 3.10 5.41 85.63 0.46 3.56 16 23 C -0.20 -4.84 9.36 25.65 0.24 -4.60 16 24 C -0.14 -2.20 12.47 67.79 0.85 -1.35 16 25 C 0.00 -0.10 5.59 44.92 0.25 0.15 16 26 C -0.20 -3.37 8.54 30.62 0.26 -3.11 16 27 C -0.14 -2.05 10.21 30.62 0.31 -1.74 16 28 H 0.14 1.57 7.06 -2.91 -0.02 1.55 16 29 H 0.09 1.92 8.06 -2.91 -0.02 1.89 16 30 H 0.06 2.03 7.37 -2.91 -0.02 2.01 16 31 H 0.13 1.62 5.91 -2.39 -0.01 1.61 16 32 H 0.10 1.80 3.44 -2.39 -0.01 1.80 16 33 H 0.07 2.87 6.95 -2.38 -0.02 2.85 16 34 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 36 H -0.02 -1.49 8.14 -2.39 -0.02 -1.51 16 37 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 38 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 39 H 0.13 2.20 7.36 -2.39 -0.02 2.19 16 40 H 0.11 2.42 7.49 -2.39 -0.02 2.40 16 41 H 0.08 2.73 8.06 -2.91 -0.02 2.71 16 42 H 0.11 1.70 8.06 -2.91 -0.02 1.68 16 43 H 0.13 1.28 7.36 -2.91 -0.02 1.25 16 44 H 0.10 3.11 7.11 -2.39 -0.02 3.10 16 45 H 0.12 1.71 3.19 -2.38 -0.01 1.70 16 46 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -77.88 381.10 4.86 -73.02 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.94 Total: 20.58 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: 7.65 Total: -18.10 kcal Atomic # 7 Polarization: -115.67 SS G_CDS: -5.76 Total: -121.43 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -77.88 4.86 -73.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351573686.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.479 kcal (2) G-P(sol) polarization free energy of solvation -77.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds