Wall clock time and date at job start Tue Mar 31 2020 11:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52989 * 109.47417 * 295.10170 * 3 2 1 5 5 H 1.08999 * 109.47549 * 54.95704 * 4 3 2 6 6 C 1.53006 * 109.47174 * 294.96544 * 4 3 2 7 7 C 1.52997 * 109.47345 * 174.81119 * 6 4 3 8 8 C 1.50698 * 109.47576 * 174.96414 * 4 3 2 9 9 N 1.30290 * 126.34599 * 60.02230 * 8 4 3 10 10 N 1.28527 * 110.05144 * 180.02562 * 9 8 4 11 11 C 1.31215 * 109.86285 * 359.97438 * 10 9 8 12 12 N 1.38590 * 126.47160 * 179.97438 * 11 10 9 13 13 C 1.46904 * 110.99888 * 236.01913 * 12 11 10 14 14 C 1.50702 * 109.46690 * 56.97180 * 13 12 11 15 15 H 1.07999 * 120.00320 * 5.04969 * 14 13 12 16 16 C 1.37881 * 119.99528 * 185.05107 * 14 13 12 17 17 N 1.31514 * 119.99600 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00312 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47011 * 90.00287 * 18 16 14 20 20 H 1.48497 * 109.47354 * 210.00621 * 18 16 14 21 21 H 1.48503 * 109.46976 * 330.00510 * 18 16 14 22 22 C 1.46891 * 111.00144 * 359.97438 * 12 11 10 23 23 C 1.52999 * 109.47265 * 164.05269 * 22 12 11 24 24 C 1.53009 * 117.49604 * 243.38467 * 23 22 12 25 25 C 1.52994 * 117.50341 * 174.72514 * 23 22 12 26 26 N 1.36454 * 107.05240 * 359.73943 * 11 10 9 27 27 C 1.46494 * 127.13761 * 180.26576 * 26 11 10 28 28 H 4.44642 * 5.63301 * 179.97438 * 4 1 2 29 29 H 1.09007 * 109.46913 * 175.10037 * 3 2 1 30 30 H 1.09003 * 109.47369 * 55.10329 * 3 2 1 31 31 H 1.08992 * 109.47295 * 54.80917 * 6 4 3 32 32 H 1.09003 * 109.46831 * 294.80946 * 6 4 3 33 33 H 1.08998 * 109.47136 * 55.60044 * 7 6 4 34 34 H 1.08998 * 109.47076 * 295.60001 * 7 6 4 35 35 H 1.09006 * 109.47283 * 175.60199 * 7 6 4 36 36 H 1.08996 * 109.47061 * 176.97221 * 13 12 11 37 37 H 1.09000 * 109.46911 * 296.97211 * 13 12 11 38 38 H 0.97004 * 119.99608 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.47200 * 284.04964 * 22 12 11 40 40 H 1.08999 * 109.47447 * 44.04804 * 22 12 11 41 41 H 1.09000 * 115.54724 * 29.04611 * 23 22 12 42 42 H 1.08990 * 117.49787 * 359.97438 * 24 23 22 43 43 H 1.09007 * 117.49615 * 145.02010 * 24 23 22 44 44 H 1.09003 * 117.50098 * 214.97940 * 25 23 22 45 45 H 1.08999 * 117.49750 * 359.97438 * 25 23 22 46 46 H 1.09006 * 109.47269 * 270.17160 * 27 26 11 47 47 H 1.09003 * 109.47138 * 30.16996 * 27 26 11 48 48 H 1.08998 * 109.47416 * 150.17082 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1563 -0.6110 1.3061 5 1 2.7216 -1.6019 1.4376 6 6 2.7519 0.2830 2.4802 7 6 3.1481 -0.3916 3.7950 8 6 4.6581 -0.7241 1.2549 9 7 5.5018 0.2578 1.1076 10 7 6.7058 -0.1921 1.1068 11 6 6.6946 -1.4958 1.2553 12 7 7.8010 -2.3291 1.3016 13 6 7.7117 -3.3802 0.2792 14 6 7.5653 -2.7471 -1.0805 15 1 7.6229 -1.6738 -1.1855 16 6 7.3579 -3.5382 -2.1905 17 7 7.2306 -2.9858 -3.3772 18 14 7.2589 -5.3947 -2.0091 19 1 5.8490 -5.7941 -1.7685 20 1 7.7511 -6.0406 -3.2524 21 1 8.0980 -5.8254 -0.8620 22 6 9.0450 -1.5610 1.1596 23 6 10.2293 -2.4212 1.6049 24 6 11.0300 -1.9466 2.8194 25 6 11.6331 -1.8428 1.4163 26 7 5.3882 -1.8754 1.3607 27 6 4.8743 -3.2348 1.5450 28 1 -1.0499 0.0001 0.0002 29 1 3.0088 1.0248 -0.0878 30 1 3.0096 -0.5871 -0.8429 31 1 1.6734 0.4398 2.4629 32 1 3.2601 1.2437 2.3972 33 1 4.2139 -0.6191 3.7799 34 1 2.5812 -1.3148 3.9150 35 1 2.9314 0.2785 4.6270 36 1 8.6168 -3.9871 0.3020 37 1 6.8461 -4.0110 0.4814 38 1 7.0851 -3.5424 -4.1582 39 1 9.1771 -1.2729 0.1167 40 1 8.9924 -0.6661 1.7798 41 1 10.1058 -3.4960 1.4722 42 1 10.7132 -1.0215 3.3007 43 1 11.4336 -2.7094 3.4854 44 1 12.4333 -2.5371 1.1598 45 1 11.7130 -0.8495 0.9745 46 1 4.7024 -3.6934 0.5711 47 1 5.6016 -3.8258 2.1016 48 1 3.9365 -3.1967 2.0993 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355261309.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:19 Heat of formation + Delta-G solvation = 158.433531 kcal Electronic energy + Delta-G solvation = -27429.337238 eV Core-core repulsion = 23909.299124 eV Total energy + Delta-G solvation = -3520.038113 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.33580 -38.07122 -36.88122 -35.74707 -34.19570 -32.94612 -32.55844 -30.19925 -28.79099 -27.85557 -27.13109 -25.46938 -24.51372 -22.67895 -22.21983 -22.05414 -20.45248 -19.75355 -19.13421 -18.00754 -17.22527 -16.62889 -15.92233 -15.76532 -15.39062 -14.68794 -14.34900 -14.30249 -14.14740 -13.90275 -13.68243 -13.55700 -13.12338 -12.81086 -12.65623 -12.55711 -12.28227 -12.02743 -11.59668 -11.48057 -11.40274 -11.24441 -11.20977 -10.95560 -10.78573 -10.69718 -10.58315 -10.49014 -10.19514 -10.01716 -9.98963 -9.77608 -9.70566 -9.50926 -9.43354 -8.88404 -8.75344 -7.35315 -6.25233 -4.28009 2.40235 2.83528 2.89273 2.94910 3.08672 3.19012 3.20326 3.58468 4.13243 4.20980 4.30948 4.52959 4.66377 4.82541 4.99581 5.05296 5.07227 5.16515 5.22124 5.29689 5.38111 5.40089 5.46008 5.58615 5.68279 5.73180 5.78391 5.85469 5.87601 5.91136 5.96014 6.00123 6.02655 6.08970 6.17581 6.22315 6.23543 6.39337 6.41947 6.54098 6.55982 6.68355 6.70136 6.83701 7.15162 7.30153 7.57083 7.64569 7.99917 8.24276 8.80419 9.32582 9.50821 10.87283 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.010941 B = 0.004989 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.647039 B = 5611.286191 C = 7235.121382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.168 4.168 3 C -0.007 4.007 4 C 0.019 3.981 5 H 0.083 0.917 6 C -0.113 4.113 7 C -0.149 4.149 8 C 0.159 3.841 9 N -0.278 5.278 10 N -0.340 5.340 11 C 0.417 3.583 12 N -0.454 5.454 13 C 0.152 3.848 14 C -0.556 4.556 15 H 0.082 0.918 16 C 0.080 3.920 17 N -0.886 5.886 18 Si 0.870 3.130 19 H -0.276 1.276 20 H -0.283 1.283 21 H -0.263 1.263 22 C 0.105 3.895 23 C -0.135 4.135 24 C -0.183 4.183 25 C -0.179 4.179 26 N -0.476 5.476 27 C 0.080 3.920 28 H 0.215 0.785 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.046 0.954 37 H 0.029 0.971 38 H 0.266 0.734 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.107 0.893 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.080 0.920 47 H 0.090 0.910 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.588 -0.022 12.060 13.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.168 4.168 3 C -0.045 4.045 4 C -0.002 4.002 5 H 0.101 0.899 6 C -0.151 4.151 7 C -0.207 4.207 8 C -0.109 4.109 9 N -0.117 5.117 10 N -0.185 5.185 11 C 0.060 3.940 12 N -0.176 5.176 13 C 0.027 3.973 14 C -0.594 4.594 15 H 0.100 0.900 16 C -0.124 4.124 17 N -0.523 5.523 18 Si 0.696 3.304 19 H -0.201 1.201 20 H -0.208 1.208 21 H -0.188 1.188 22 C -0.022 4.022 23 C -0.153 4.153 24 C -0.220 4.220 25 C -0.216 4.216 26 N -0.170 5.170 27 C -0.064 4.064 28 H 0.232 0.768 29 H 0.119 0.881 30 H 0.111 0.889 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.125 0.875 42 H 0.109 0.891 43 H 0.106 0.894 44 H 0.109 0.891 45 H 0.112 0.888 46 H 0.099 0.901 47 H 0.108 0.892 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.020 1.062 12.145 13.597 hybrid contribution -0.703 -2.330 -0.808 2.565 sum -6.723 -1.269 11.338 13.242 Atomic orbital electron populations 1.24781 0.95789 1.02016 1.01434 1.23056 0.94284 0.99676 0.99810 1.18755 0.84315 1.03738 0.97672 1.19373 0.84856 1.00555 0.95449 0.89863 1.21586 1.01157 0.99360 0.92980 1.21752 1.01617 1.00235 0.97077 1.23988 0.95781 0.82307 1.08849 1.73738 0.95549 1.25242 1.17171 1.74558 1.13600 1.05531 1.24776 1.22430 0.83306 0.90625 0.97600 1.59066 0.98796 1.11901 1.47875 1.20509 0.98076 0.89814 0.88918 1.21578 1.51585 0.96079 0.90181 0.90012 1.24899 0.94137 0.98314 0.95097 1.69916 1.47899 1.35760 0.98677 0.86951 0.78837 0.86187 0.78386 1.20133 1.20829 1.18768 1.21497 0.84589 0.93905 1.02230 1.22226 0.91507 1.00241 1.01342 1.23016 1.05048 1.02873 0.91062 1.22922 0.96411 1.02648 0.99627 1.45690 1.05983 1.08513 1.56836 1.22014 1.00312 0.80656 1.03421 0.76825 0.88129 0.88877 0.91150 0.90444 0.92754 0.93121 0.92631 0.93572 0.95313 0.92427 0.90931 0.90422 0.87516 0.89057 0.89446 0.89105 0.88801 0.90147 0.89153 0.90191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.46 19.25 29.55 0.57 -1.89 16 2 C -0.17 -2.16 12.23 -37.12 -0.45 -2.62 16 3 C -0.01 -0.10 5.17 -29.52 -0.15 -0.26 16 4 C 0.02 0.26 2.20 -91.78 -0.20 0.06 16 5 H 0.08 1.03 6.94 -51.93 -0.36 0.67 16 6 C -0.11 -1.35 5.28 -26.73 -0.14 -1.50 16 7 C -0.15 -1.70 9.80 37.16 0.36 -1.33 16 8 C 0.16 2.83 5.50 -154.02 -0.85 1.98 16 9 N -0.28 -5.82 12.18 32.99 0.40 -5.42 16 10 N -0.34 -7.71 11.03 30.32 0.33 -7.37 16 11 C 0.42 8.84 5.93 -318.86 -1.89 6.95 16 12 N -0.45 -9.26 4.73 -175.88 -0.83 -10.09 16 13 C 0.15 3.35 3.86 -4.97 -0.02 3.33 16 14 C -0.56 -14.77 8.15 -34.44 -0.28 -15.05 16 15 H 0.08 2.51 6.91 -52.49 -0.36 2.15 16 16 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 17 N -0.89 -26.16 13.96 55.43 0.77 -25.39 16 18 Si 0.87 19.84 27.37 -169.99 -4.65 15.18 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.26 -5.66 6.69 56.52 0.38 -5.28 16 22 C 0.10 2.04 4.69 -3.83 -0.02 2.02 16 23 C -0.13 -2.20 5.67 -90.62 -0.51 -2.71 16 24 C -0.18 -2.48 10.18 -26.69 -0.27 -2.75 16 25 C -0.18 -2.51 10.25 -26.70 -0.27 -2.78 16 26 N -0.48 -8.79 3.21 -121.46 -0.39 -9.18 16 27 C 0.08 1.16 9.22 59.84 0.55 1.71 16 28 H 0.21 1.57 7.80 -54.10 -0.42 1.15 16 29 H 0.10 1.43 8.14 -51.92 -0.42 1.01 16 30 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.07 0.76 7.23 -51.93 -0.38 0.38 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.74 7.25 -51.93 -0.38 0.36 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.05 1.01 5.97 -51.93 -0.31 0.70 16 37 H 0.03 0.61 4.71 -51.93 -0.24 0.36 16 38 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.07 1.64 6.60 -51.93 -0.34 1.29 16 40 H 0.08 1.50 7.23 -51.93 -0.38 1.12 16 41 H 0.11 1.80 6.79 -51.93 -0.35 1.44 16 42 H 0.09 1.21 8.03 -51.93 -0.42 0.80 16 43 H 0.09 1.05 8.14 -51.92 -0.42 0.63 16 44 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 46 H 0.08 1.24 7.90 -51.93 -0.41 0.83 16 47 H 0.09 1.25 7.56 -51.93 -0.39 0.85 16 48 H 0.08 0.88 7.23 -51.93 -0.38 0.50 16 LS Contribution 387.83 15.07 5.84 5.84 Total: -1.00 -31.70 387.83 -9.86 -41.55 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -7.66 Total: 7.62 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -3.68 Total: -12.77 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: 0.29 Total: -57.44 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.65 Total: 15.18 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.70 -9.86 -41.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355261309.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.986 kcal (2) G-P(sol) polarization free energy of solvation -31.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds