Wall clock time and date at job start Tue Mar 31 2020 11:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52989 * 109.47417 * 295.10170 * 3 2 1 5 5 H 1.08999 * 109.47549 * 54.95704 * 4 3 2 6 6 C 1.53006 * 109.47174 * 294.96544 * 4 3 2 7 7 C 1.52997 * 109.47345 * 174.81119 * 6 4 3 8 8 C 1.50698 * 109.47576 * 174.96414 * 4 3 2 9 9 N 1.30290 * 126.34599 * 60.02230 * 8 4 3 10 10 N 1.28527 * 110.05144 * 180.02562 * 9 8 4 11 11 C 1.31215 * 109.86285 * 359.97438 * 10 9 8 12 12 N 1.38590 * 126.47160 * 179.97438 * 11 10 9 13 13 C 1.46904 * 110.99888 * 236.01913 * 12 11 10 14 14 C 1.50702 * 109.46690 * 56.97180 * 13 12 11 15 15 H 1.07999 * 120.00320 * 5.04969 * 14 13 12 16 16 C 1.37881 * 119.99528 * 185.05107 * 14 13 12 17 17 N 1.31514 * 119.99600 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00312 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47011 * 90.00287 * 18 16 14 20 20 H 1.48497 * 109.47354 * 210.00621 * 18 16 14 21 21 H 1.48503 * 109.46976 * 330.00510 * 18 16 14 22 22 C 1.46891 * 111.00144 * 359.97438 * 12 11 10 23 23 C 1.52999 * 109.47265 * 164.05269 * 22 12 11 24 24 C 1.53009 * 117.49604 * 243.38467 * 23 22 12 25 25 C 1.52994 * 117.50341 * 174.72514 * 23 22 12 26 26 N 1.36454 * 107.05240 * 359.73943 * 11 10 9 27 27 C 1.46494 * 127.13761 * 180.26576 * 26 11 10 28 28 H 4.44642 * 5.63301 * 179.97438 * 4 1 2 29 29 H 1.09007 * 109.46913 * 175.10037 * 3 2 1 30 30 H 1.09003 * 109.47369 * 55.10329 * 3 2 1 31 31 H 1.08992 * 109.47295 * 54.80917 * 6 4 3 32 32 H 1.09003 * 109.46831 * 294.80946 * 6 4 3 33 33 H 1.08998 * 109.47136 * 55.60044 * 7 6 4 34 34 H 1.08998 * 109.47076 * 295.60001 * 7 6 4 35 35 H 1.09006 * 109.47283 * 175.60199 * 7 6 4 36 36 H 1.08996 * 109.47061 * 176.97221 * 13 12 11 37 37 H 1.09000 * 109.46911 * 296.97211 * 13 12 11 38 38 H 0.97004 * 119.99608 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.47200 * 284.04964 * 22 12 11 40 40 H 1.08999 * 109.47447 * 44.04804 * 22 12 11 41 41 H 1.09000 * 115.54724 * 29.04611 * 23 22 12 42 42 H 1.08990 * 117.49787 * 359.97438 * 24 23 22 43 43 H 1.09007 * 117.49615 * 145.02010 * 24 23 22 44 44 H 1.09003 * 117.50098 * 214.97940 * 25 23 22 45 45 H 1.08999 * 117.49750 * 359.97438 * 25 23 22 46 46 H 1.09006 * 109.47269 * 270.17160 * 27 26 11 47 47 H 1.09003 * 109.47138 * 30.16996 * 27 26 11 48 48 H 1.08998 * 109.47416 * 150.17082 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1563 -0.6110 1.3061 5 1 2.7216 -1.6019 1.4376 6 6 2.7519 0.2830 2.4802 7 6 3.1481 -0.3916 3.7950 8 6 4.6581 -0.7241 1.2549 9 7 5.5018 0.2578 1.1076 10 7 6.7058 -0.1921 1.1068 11 6 6.6946 -1.4958 1.2553 12 7 7.8010 -2.3291 1.3016 13 6 7.7117 -3.3802 0.2792 14 6 7.5653 -2.7471 -1.0805 15 1 7.6229 -1.6738 -1.1855 16 6 7.3579 -3.5382 -2.1905 17 7 7.2306 -2.9858 -3.3772 18 14 7.2589 -5.3947 -2.0091 19 1 5.8490 -5.7941 -1.7685 20 1 7.7511 -6.0406 -3.2524 21 1 8.0980 -5.8254 -0.8620 22 6 9.0450 -1.5610 1.1596 23 6 10.2293 -2.4212 1.6049 24 6 11.0300 -1.9466 2.8194 25 6 11.6331 -1.8428 1.4163 26 7 5.3882 -1.8754 1.3607 27 6 4.8743 -3.2348 1.5450 28 1 -1.0499 0.0001 0.0002 29 1 3.0088 1.0248 -0.0878 30 1 3.0096 -0.5871 -0.8429 31 1 1.6734 0.4398 2.4629 32 1 3.2601 1.2437 2.3972 33 1 4.2139 -0.6191 3.7799 34 1 2.5812 -1.3148 3.9150 35 1 2.9314 0.2785 4.6270 36 1 8.6168 -3.9871 0.3020 37 1 6.8461 -4.0110 0.4814 38 1 7.0851 -3.5424 -4.1582 39 1 9.1771 -1.2729 0.1167 40 1 8.9924 -0.6661 1.7798 41 1 10.1058 -3.4960 1.4722 42 1 10.7132 -1.0215 3.3007 43 1 11.4336 -2.7094 3.4854 44 1 12.4333 -2.5371 1.1598 45 1 11.7130 -0.8495 0.9745 46 1 4.7024 -3.6934 0.5711 47 1 5.6016 -3.8258 2.1016 48 1 3.9365 -3.1967 2.0993 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355261309.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:18 Heat of formation + Delta-G solvation = 141.158077 kcal Electronic energy + Delta-G solvation = -27430.086358 eV Core-core repulsion = 23909.299124 eV Total energy + Delta-G solvation = -3520.787233 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.87477 -39.55010 -38.01686 -37.16537 -35.62169 -34.63850 -33.89223 -31.39580 -30.41673 -29.41695 -28.45449 -27.12273 -25.68267 -24.26120 -23.61484 -23.17030 -21.87353 -21.21535 -20.53503 -19.21113 -18.95817 -18.06944 -17.38013 -17.19377 -16.88024 -16.15398 -15.85512 -15.80607 -15.40187 -15.04200 -14.80173 -14.66284 -14.60846 -14.38833 -14.12511 -13.89116 -13.62131 -13.38403 -13.22251 -12.97975 -12.56815 -12.46482 -12.37101 -12.29983 -12.24886 -12.16731 -12.06099 -11.81366 -11.77781 -11.36723 -11.21490 -11.12476 -11.00818 -10.94368 -10.88816 -10.82216 -10.45914 -9.03302 -8.36149 -6.44974 0.91036 1.29463 1.33788 1.44425 1.49788 1.84456 1.95443 2.06137 2.27272 2.83449 2.98138 3.10144 3.23729 3.55230 3.76062 3.82391 3.89447 4.01611 4.05305 4.09132 4.16202 4.28204 4.29753 4.38032 4.42898 4.47722 4.55035 4.61434 4.65086 4.78137 4.80966 4.82949 4.91756 4.94164 4.95215 5.03470 5.06679 5.08179 5.13074 5.18278 5.27170 5.30189 5.32275 5.36611 5.40968 5.71622 5.86425 6.13425 6.40489 6.61822 6.72917 7.19829 7.92590 8.80770 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.010941 B = 0.004989 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.647039 B = 5611.286191 C = 7235.121382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.216 4.216 3 C 0.000 4.000 4 C 0.022 3.978 5 H 0.106 0.894 6 C -0.105 4.105 7 C -0.145 4.145 8 C 0.179 3.821 9 N -0.317 5.317 10 N -0.377 5.377 11 C 0.395 3.605 12 N -0.441 5.441 13 C 0.162 3.838 14 C -0.550 4.550 15 H 0.021 0.979 16 C 0.017 3.983 17 N -0.944 5.944 18 Si 0.943 3.057 19 H -0.258 1.258 20 H -0.287 1.287 21 H -0.234 1.234 22 C 0.116 3.884 23 C -0.159 4.159 24 C -0.158 4.158 25 C -0.174 4.174 26 N -0.478 5.478 27 C 0.068 3.932 28 H 0.253 0.747 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.058 0.942 33 H 0.026 0.974 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.049 0.951 38 H 0.267 0.733 39 H 0.026 0.974 40 H 0.071 0.929 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.113 0.887 44 H 0.110 0.890 45 H 0.087 0.913 46 H 0.072 0.928 47 H 0.102 0.898 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.493 -2.804 14.634 17.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.216 4.216 3 C -0.038 4.038 4 C 0.001 3.999 5 H 0.125 0.875 6 C -0.143 4.143 7 C -0.202 4.202 8 C -0.091 4.091 9 N -0.156 5.156 10 N -0.221 5.221 11 C 0.037 3.963 12 N -0.163 5.163 13 C 0.036 3.964 14 C -0.589 4.589 15 H 0.040 0.960 16 C -0.182 4.182 17 N -0.583 5.583 18 Si 0.765 3.235 19 H -0.182 1.182 20 H -0.213 1.213 21 H -0.157 1.157 22 C -0.012 4.012 23 C -0.177 4.177 24 C -0.194 4.194 25 C -0.212 4.212 26 N -0.172 5.172 27 C -0.074 4.074 28 H 0.269 0.731 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.111 0.889 32 H 0.077 0.923 33 H 0.045 0.955 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.044 0.956 40 H 0.089 0.911 41 H 0.125 0.875 42 H 0.110 0.890 43 H 0.132 0.868 44 H 0.129 0.871 45 H 0.106 0.894 46 H 0.091 0.909 47 H 0.120 0.880 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.927 -1.708 14.756 16.837 hybrid contribution -0.218 -1.288 -1.650 2.105 sum -8.145 -2.997 13.106 15.719 Atomic orbital electron populations 1.25650 0.96440 0.99208 0.98645 1.22870 0.94179 1.02210 1.02355 1.18476 0.86007 1.02443 0.96856 1.19626 0.81833 1.02284 0.96190 0.87549 1.21532 1.02166 0.98074 0.92521 1.21721 1.00038 1.01517 0.96913 1.24820 0.97269 0.81568 1.05401 1.73649 0.95594 1.26815 1.19512 1.74430 1.14986 1.07012 1.25719 1.22620 0.84607 0.90601 0.98495 1.59193 0.98846 1.11604 1.46667 1.20377 0.99158 0.90215 0.86632 1.21645 1.50853 0.93454 0.92932 0.96029 1.25918 0.93518 1.04503 0.94249 1.70110 1.50083 1.38172 0.99933 0.85781 0.80211 0.78411 0.79095 1.18219 1.21266 1.15685 1.21338 0.85860 0.94649 0.99334 1.22108 0.91246 0.99573 1.04823 1.23081 1.02540 1.03231 0.90581 1.23030 0.95289 1.02612 1.00241 1.45994 1.05035 1.10113 1.56061 1.22374 1.02576 0.78598 1.03806 0.73087 0.89559 0.91506 0.88948 0.92270 0.95494 0.90925 0.91295 0.92476 0.93278 0.92442 0.95557 0.91103 0.87482 0.88999 0.86846 0.87131 0.89435 0.90936 0.87968 0.86007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.42 19.25 74.32 1.43 -1.99 16 2 C -0.22 -5.25 12.23 31.13 0.38 -4.87 16 3 C 0.00 0.00 5.17 28.79 0.15 0.15 16 4 C 0.02 0.58 2.20 -11.54 -0.03 0.55 16 5 H 0.11 2.37 6.94 -2.39 -0.02 2.36 16 6 C -0.10 -2.39 5.28 30.60 0.16 -2.22 16 7 C -0.14 -2.98 9.80 71.98 0.71 -2.27 16 8 C 0.18 6.55 5.50 137.64 0.76 7.31 16 9 N -0.32 -14.16 12.18 -49.54 -0.60 -14.77 16 10 N -0.38 -18.35 11.03 -58.00 -0.64 -18.99 16 11 C 0.39 17.45 5.93 260.11 1.54 18.99 16 12 N -0.44 -18.43 4.73 -710.36 -3.36 -21.79 16 13 C 0.16 7.13 3.86 85.56 0.33 7.46 16 14 C -0.55 -30.59 8.15 25.60 0.21 -30.38 16 15 H 0.02 1.44 6.91 -2.91 -0.02 1.42 16 16 C 0.02 0.95 5.47 84.66 0.46 1.41 16 17 N -0.94 -58.45 13.96 21.45 0.30 -58.15 16 18 Si 0.94 40.41 27.37 68.60 1.88 42.29 16 19 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 20 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 21 H -0.23 -8.88 6.69 99.48 0.67 -8.22 16 22 C 0.12 4.74 4.69 86.30 0.40 5.15 16 23 C -0.16 -5.16 5.67 -10.79 -0.06 -5.22 16 24 C -0.16 -3.98 10.18 30.62 0.31 -3.67 16 25 C -0.17 -4.76 10.25 30.62 0.31 -4.44 16 26 N -0.48 -17.81 3.21 -538.19 -1.73 -19.53 16 27 C 0.07 1.85 9.22 127.77 1.18 3.03 16 28 H 0.25 2.41 7.80 -4.42 -0.03 2.38 16 29 H 0.09 2.65 8.14 -2.38 -0.02 2.63 16 30 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.09 1.74 7.23 -2.39 -0.02 1.72 16 32 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.03 0.70 7.25 -2.39 -0.02 0.68 16 34 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.06 2.42 5.97 -2.39 -0.01 2.40 16 37 H 0.05 1.98 4.71 -2.39 -0.01 1.97 16 38 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 39 H 0.03 1.30 6.60 -2.39 -0.02 1.28 16 40 H 0.07 2.93 7.23 -2.39 -0.02 2.92 16 41 H 0.11 3.47 6.79 -2.39 -0.02 3.45 16 42 H 0.09 2.33 8.03 -2.39 -0.02 2.31 16 43 H 0.11 2.33 8.14 -2.38 -0.02 2.31 16 44 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 45 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 46 H 0.07 2.11 7.90 -2.38 -0.02 2.09 16 47 H 0.10 2.54 7.56 -2.39 -0.02 2.52 16 48 H 0.12 2.24 7.23 -2.39 -0.02 2.22 16 Total: -1.00 -76.07 387.83 5.00 -71.07 By element: Atomic # 1 Polarization: 30.01 SS G_CDS: 0.90 Total: 30.91 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 8.25 Total: -11.03 kcal Atomic # 7 Polarization: -127.21 SS G_CDS: -6.03 Total: -133.24 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 1.88 Total: 42.29 kcal Total: -76.07 5.00 -71.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355261309.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.230 kcal (2) G-P(sol) polarization free energy of solvation -76.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds