Wall clock time and date at job start Tue Mar 31 2020 11:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47261 * 253.69890 * 3 2 1 5 5 H 1.09007 * 109.46971 * 305.00139 * 4 3 2 6 6 C 1.52999 * 109.47083 * 65.00199 * 4 3 2 7 7 C 1.52998 * 109.46982 * 185.00567 * 6 4 3 8 8 C 1.50693 * 109.47236 * 185.00440 * 4 3 2 9 9 N 1.30287 * 126.34999 * 300.02266 * 8 4 3 10 10 N 1.28527 * 110.06005 * 180.02562 * 9 8 4 11 11 C 1.31217 * 109.85894 * 359.97438 * 10 9 8 12 12 N 1.38583 * 126.47594 * 179.97438 * 11 10 9 13 13 C 1.46903 * 110.99957 * 106.41335 * 12 11 10 14 14 C 1.50701 * 109.46865 * 303.70387 * 13 12 11 15 15 H 1.07993 * 120.00524 * 4.68139 * 14 13 12 16 16 C 1.37878 * 119.99699 * 184.68355 * 14 13 12 17 17 N 1.31511 * 120.00264 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00078 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47100 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.46995 * 119.99866 * 18 16 14 21 21 H 1.48495 * 109.47165 * 239.99942 * 18 16 14 22 22 C 1.46900 * 111.00093 * 342.45984 * 12 11 10 23 23 C 1.52992 * 109.47294 * 195.30411 * 22 12 11 24 24 C 1.52999 * 117.50084 * 245.78451 * 23 22 12 25 25 C 1.53001 * 117.50049 * 177.12177 * 23 22 12 26 26 N 1.36457 * 107.05194 * 359.74251 * 11 10 9 27 27 C 1.46499 * 127.13820 * 180.26617 * 26 11 10 28 28 H 4.44656 * 5.63318 * 179.97438 * 4 1 2 29 29 H 1.09000 * 109.47493 * 13.69935 * 3 2 1 30 30 H 1.09005 * 109.46655 * 133.70180 * 3 2 1 31 31 H 1.09006 * 109.46987 * 304.99798 * 6 4 3 32 32 H 1.08996 * 109.47037 * 65.00322 * 6 4 3 33 33 H 1.09003 * 109.47361 * 180.02562 * 7 6 4 34 34 H 1.09005 * 109.47145 * 299.99565 * 7 6 4 35 35 H 1.08996 * 109.47434 * 59.99998 * 7 6 4 36 36 H 1.09001 * 109.47185 * 63.69974 * 13 12 11 37 37 H 1.08992 * 109.47146 * 183.70564 * 13 12 11 38 38 H 0.96998 * 120.00323 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.47113 * 315.30631 * 22 12 11 40 40 H 1.09007 * 109.47032 * 75.30153 * 22 12 11 41 41 H 1.09000 * 115.55195 * 31.45782 * 23 22 12 42 42 H 1.09005 * 117.49839 * 359.97438 * 24 23 22 43 43 H 1.08997 * 117.50364 * 145.02209 * 24 23 22 44 44 H 1.08994 * 117.50444 * 214.98212 * 25 23 22 45 45 H 1.09000 * 117.49761 * 0.02562 * 25 23 22 46 46 H 1.08994 * 109.46894 * 275.30537 * 27 26 11 47 47 H 1.09003 * 109.47309 * 35.30513 * 27 26 11 48 48 H 1.09005 * 109.47060 * 155.30647 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1558 0.4058 1.3845 5 1 2.7207 1.3649 1.6656 6 6 2.7516 -0.6572 2.4080 7 6 3.1514 -0.1933 3.8101 8 6 4.6576 0.5259 1.3514 9 7 5.5017 -0.4213 1.0552 10 7 6.7056 0.0235 1.1246 11 6 6.6939 1.2890 1.4712 12 7 7.8000 2.1052 1.6470 13 6 7.9328 3.0581 0.5369 14 6 7.9992 2.3047 -0.7666 15 1 7.8722 1.2323 -0.7775 16 6 8.2223 2.9845 -1.9451 17 7 8.3765 4.2905 -1.9319 18 14 8.3054 2.0506 -3.5608 19 1 8.1025 0.6018 -3.3061 20 1 7.2447 2.5464 -4.4743 21 1 9.6356 2.2611 -4.1864 22 6 9.0233 1.3074 1.8052 23 6 10.1387 2.1902 2.3684 24 6 11.3459 2.4631 1.4690 25 6 11.4826 1.5240 2.6701 26 7 5.3868 1.6509 1.6209 27 6 4.8716 2.9700 1.9960 28 1 -1.0501 0.0001 -0.0002 29 1 3.0098 -0.9976 -0.2434 30 1 3.0089 0.7109 -0.7430 31 1 1.6726 -0.8074 2.3690 32 1 3.2576 -1.5946 2.1773 33 1 2.8638 -0.9508 4.5392 34 1 4.2303 -0.0430 3.8492 35 1 2.6454 0.7441 4.0407 36 1 7.0717 3.7264 0.5267 37 1 8.8442 3.6417 0.6661 38 1 8.5338 4.7687 -2.7610 39 1 8.8324 0.4816 2.4905 40 1 9.3271 0.9122 0.8358 41 1 9.8141 2.9917 3.0320 42 1 11.3457 2.0132 0.4761 43 1 11.8158 3.4439 1.5410 44 1 12.0423 1.8875 3.5319 45 1 11.5722 0.4569 2.4670 46 1 4.8723 3.0649 3.0818 47 1 5.5053 3.7441 1.5632 48 1 3.8539 3.0824 1.6221 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355261310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:21 Heat of formation + Delta-G solvation = 153.799384 kcal Electronic energy + Delta-G solvation = -27360.786793 eV Core-core repulsion = 23840.547728 eV Total energy + Delta-G solvation = -3520.239065 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.33750 -37.95361 -36.90428 -35.48760 -34.22576 -32.99997 -32.54355 -30.20452 -28.45167 -27.51995 -27.12259 -25.30226 -24.56059 -22.73743 -22.42891 -21.84243 -20.38736 -19.85397 -19.12682 -18.06087 -16.89057 -16.41594 -15.94625 -15.54238 -15.31486 -14.86525 -14.45840 -14.28650 -14.10685 -13.79173 -13.70982 -13.28843 -13.09679 -12.76112 -12.75261 -12.44558 -12.00210 -11.86704 -11.50397 -11.32594 -11.26979 -11.20469 -11.02998 -10.90266 -10.81488 -10.70940 -10.58588 -10.28593 -10.18632 -10.05958 -10.01645 -9.85292 -9.61659 -9.46882 -9.27137 -8.72768 -8.53609 -7.42816 -6.15651 -4.21984 2.39008 2.76856 2.83008 2.92955 3.23282 3.32165 3.41395 3.58120 4.23347 4.27423 4.36676 4.60027 4.66501 4.78319 5.01964 5.04329 5.17675 5.19084 5.32168 5.36643 5.43329 5.43607 5.52453 5.56138 5.63024 5.73782 5.82875 5.84415 5.93967 5.94747 5.99899 6.00281 6.05603 6.13104 6.21488 6.26045 6.37819 6.44778 6.48526 6.64338 6.68746 6.89205 7.01709 7.28778 7.29470 7.58327 7.60059 7.81223 8.02950 8.18014 8.88230 9.45410 9.49506 10.91045 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.011573 B = 0.004742 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.843273 B = 5903.868960 C = 7454.354737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.170 4.170 3 C -0.008 4.008 4 C 0.019 3.981 5 H 0.084 0.916 6 C -0.112 4.112 7 C -0.149 4.149 8 C 0.155 3.845 9 N -0.281 5.281 10 N -0.333 5.333 11 C 0.413 3.587 12 N -0.468 5.468 13 C 0.192 3.808 14 C -0.550 4.550 15 H 0.070 0.930 16 C 0.070 3.930 17 N -0.890 5.890 18 Si 0.886 3.114 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.282 1.282 22 C 0.110 3.890 23 C -0.135 4.135 24 C -0.169 4.169 25 C -0.186 4.186 26 N -0.475 5.475 27 C 0.081 3.919 28 H 0.215 0.785 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.027 0.973 37 H 0.056 0.944 38 H 0.262 0.738 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.073 0.927 47 H 0.096 0.904 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.973 -3.225 9.877 13.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.170 4.170 3 C -0.045 4.045 4 C -0.002 4.002 5 H 0.102 0.898 6 C -0.150 4.150 7 C -0.206 4.206 8 C -0.113 4.113 9 N -0.121 5.121 10 N -0.178 5.178 11 C 0.056 3.944 12 N -0.192 5.192 13 C 0.069 3.931 14 C -0.589 4.589 15 H 0.088 0.912 16 C -0.133 4.133 17 N -0.529 5.529 18 Si 0.714 3.286 19 H -0.194 1.194 20 H -0.210 1.210 21 H -0.208 1.208 22 C -0.018 4.018 23 C -0.154 4.154 24 C -0.206 4.206 25 C -0.224 4.224 26 N -0.170 5.170 27 C -0.063 4.063 28 H 0.232 0.768 29 H 0.119 0.881 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.045 0.955 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.122 0.878 42 H 0.116 0.884 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.108 0.892 46 H 0.091 0.909 47 H 0.114 0.886 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.430 -4.103 9.804 13.565 hybrid contribution -0.462 0.831 -1.404 1.696 sum -8.892 -3.272 8.400 12.662 Atomic orbital electron populations 1.24803 0.95806 1.02022 1.01169 1.23039 0.94272 0.99715 1.00001 1.18763 0.84369 1.04466 0.96904 1.19384 0.84867 1.00568 0.95424 0.89807 1.21572 1.01111 0.98547 0.93776 1.21742 1.01682 1.00789 0.96413 1.24036 0.95820 0.83761 1.07654 1.73761 0.95744 1.25163 1.17442 1.74640 1.13364 1.08077 1.21672 1.22483 0.83997 0.91165 0.96723 1.59319 0.99733 1.15768 1.44402 1.19982 0.98698 0.89721 0.84749 1.21837 1.50109 0.94923 0.91986 0.91199 1.24873 0.94580 0.94720 0.99093 1.69934 1.48644 1.06706 1.27578 0.86595 0.77721 0.80675 0.83599 1.19414 1.21008 1.20760 1.21398 0.86393 0.93151 1.00838 1.22134 0.88768 1.01763 1.02752 1.22990 1.02027 1.00040 0.95592 1.22940 1.00502 0.98816 1.00113 1.45822 1.06215 1.11052 1.53873 1.21994 1.00653 0.82370 1.01259 0.76789 0.88129 0.89089 0.91167 0.90461 0.92652 0.92767 0.93067 0.95517 0.92560 0.92792 0.91486 0.91461 0.87819 0.88367 0.89408 0.89414 0.89162 0.90875 0.88553 0.90169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.29 19.25 29.55 0.57 -1.72 16 2 C -0.17 -2.06 12.23 -37.12 -0.45 -2.51 16 3 C -0.01 -0.10 5.17 -29.52 -0.15 -0.25 16 4 C 0.02 0.24 2.20 -91.77 -0.20 0.04 16 5 H 0.08 0.98 6.83 -51.93 -0.35 0.62 16 6 C -0.11 -1.31 5.28 -26.73 -0.14 -1.45 16 7 C -0.15 -1.66 9.73 37.16 0.36 -1.30 16 8 C 0.15 2.68 5.56 -154.02 -0.86 1.82 16 9 N -0.28 -5.80 12.18 32.99 0.40 -5.40 16 10 N -0.33 -7.55 10.82 30.32 0.33 -7.22 16 11 C 0.41 8.74 5.65 -318.87 -1.80 6.94 16 12 N -0.47 -9.78 4.70 -175.88 -0.83 -10.61 16 13 C 0.19 4.59 4.96 -4.97 -0.02 4.56 16 14 C -0.55 -14.72 7.54 -34.44 -0.26 -14.98 16 15 H 0.07 1.99 6.41 -52.49 -0.34 1.66 16 16 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 17 N -0.89 -24.97 13.29 55.43 0.74 -24.23 16 18 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 19 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C 0.11 2.16 4.61 -3.83 -0.02 2.14 16 23 C -0.14 -2.30 4.98 -90.62 -0.45 -2.75 16 24 C -0.17 -2.81 10.13 -26.69 -0.27 -3.08 16 25 C -0.19 -2.66 10.26 -26.69 -0.27 -2.94 16 26 N -0.48 -8.58 3.21 -121.46 -0.39 -8.97 16 27 C 0.08 1.13 10.99 59.85 0.66 1.79 16 28 H 0.22 1.44 7.80 -54.08 -0.42 1.02 16 29 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 30 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.07 0.73 7.23 -51.93 -0.38 0.35 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.73 7.38 -51.93 -0.38 0.35 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.03 0.67 6.20 -51.93 -0.32 0.35 16 37 H 0.06 1.42 7.25 -51.93 -0.38 1.04 16 38 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 39 H 0.07 1.29 7.83 -51.93 -0.41 0.88 16 40 H 0.07 1.50 6.59 -51.92 -0.34 1.16 16 41 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 42 H 0.10 1.79 8.04 -51.93 -0.42 1.38 16 43 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.10 1.50 6.15 -51.93 -0.32 1.18 16 48 H 0.08 0.91 7.02 -51.93 -0.36 0.55 16 LS Contribution 393.49 15.07 5.93 5.93 Total: -1.00 -30.92 393.49 -10.04 -40.95 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -7.78 Total: 4.71 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -3.41 Total: -11.85 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: 0.25 Total: -56.43 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.92 -10.04 -40.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355261310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.753 kcal (2) G-P(sol) polarization free energy of solvation -30.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds