Wall clock time and date at job start Tue Mar 31 2020 11:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47261 * 253.69890 * 3 2 1 5 5 H 1.09007 * 109.46971 * 305.00139 * 4 3 2 6 6 C 1.52999 * 109.47083 * 65.00199 * 4 3 2 7 7 C 1.52998 * 109.46982 * 185.00567 * 6 4 3 8 8 C 1.50693 * 109.47236 * 185.00440 * 4 3 2 9 9 N 1.30287 * 126.34999 * 300.02266 * 8 4 3 10 10 N 1.28527 * 110.06005 * 180.02562 * 9 8 4 11 11 C 1.31217 * 109.85894 * 359.97438 * 10 9 8 12 12 N 1.38583 * 126.47594 * 179.97438 * 11 10 9 13 13 C 1.46903 * 110.99957 * 106.41335 * 12 11 10 14 14 C 1.50701 * 109.46865 * 303.70387 * 13 12 11 15 15 H 1.07993 * 120.00524 * 4.68139 * 14 13 12 16 16 C 1.37878 * 119.99699 * 184.68355 * 14 13 12 17 17 N 1.31511 * 120.00264 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00078 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47100 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.46995 * 119.99866 * 18 16 14 21 21 H 1.48495 * 109.47165 * 239.99942 * 18 16 14 22 22 C 1.46900 * 111.00093 * 342.45984 * 12 11 10 23 23 C 1.52992 * 109.47294 * 195.30411 * 22 12 11 24 24 C 1.52999 * 117.50084 * 245.78451 * 23 22 12 25 25 C 1.53001 * 117.50049 * 177.12177 * 23 22 12 26 26 N 1.36457 * 107.05194 * 359.74251 * 11 10 9 27 27 C 1.46499 * 127.13820 * 180.26617 * 26 11 10 28 28 H 4.44656 * 5.63318 * 179.97438 * 4 1 2 29 29 H 1.09000 * 109.47493 * 13.69935 * 3 2 1 30 30 H 1.09005 * 109.46655 * 133.70180 * 3 2 1 31 31 H 1.09006 * 109.46987 * 304.99798 * 6 4 3 32 32 H 1.08996 * 109.47037 * 65.00322 * 6 4 3 33 33 H 1.09003 * 109.47361 * 180.02562 * 7 6 4 34 34 H 1.09005 * 109.47145 * 299.99565 * 7 6 4 35 35 H 1.08996 * 109.47434 * 59.99998 * 7 6 4 36 36 H 1.09001 * 109.47185 * 63.69974 * 13 12 11 37 37 H 1.08992 * 109.47146 * 183.70564 * 13 12 11 38 38 H 0.96998 * 120.00323 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.47113 * 315.30631 * 22 12 11 40 40 H 1.09007 * 109.47032 * 75.30153 * 22 12 11 41 41 H 1.09000 * 115.55195 * 31.45782 * 23 22 12 42 42 H 1.09005 * 117.49839 * 359.97438 * 24 23 22 43 43 H 1.08997 * 117.50364 * 145.02209 * 24 23 22 44 44 H 1.08994 * 117.50444 * 214.98212 * 25 23 22 45 45 H 1.09000 * 117.49761 * 0.02562 * 25 23 22 46 46 H 1.08994 * 109.46894 * 275.30537 * 27 26 11 47 47 H 1.09003 * 109.47309 * 35.30513 * 27 26 11 48 48 H 1.09005 * 109.47060 * 155.30647 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1558 0.4058 1.3845 5 1 2.7207 1.3649 1.6656 6 6 2.7516 -0.6572 2.4080 7 6 3.1514 -0.1933 3.8101 8 6 4.6576 0.5259 1.3514 9 7 5.5017 -0.4213 1.0552 10 7 6.7056 0.0235 1.1246 11 6 6.6939 1.2890 1.4712 12 7 7.8000 2.1052 1.6470 13 6 7.9328 3.0581 0.5369 14 6 7.9992 2.3047 -0.7666 15 1 7.8722 1.2323 -0.7775 16 6 8.2223 2.9845 -1.9451 17 7 8.3765 4.2905 -1.9319 18 14 8.3054 2.0506 -3.5608 19 1 8.1025 0.6018 -3.3061 20 1 7.2447 2.5464 -4.4743 21 1 9.6356 2.2611 -4.1864 22 6 9.0233 1.3074 1.8052 23 6 10.1387 2.1902 2.3684 24 6 11.3459 2.4631 1.4690 25 6 11.4826 1.5240 2.6701 26 7 5.3868 1.6509 1.6209 27 6 4.8716 2.9700 1.9960 28 1 -1.0501 0.0001 -0.0002 29 1 3.0098 -0.9976 -0.2434 30 1 3.0089 0.7109 -0.7430 31 1 1.6726 -0.8074 2.3690 32 1 3.2576 -1.5946 2.1773 33 1 2.8638 -0.9508 4.5392 34 1 4.2303 -0.0430 3.8492 35 1 2.6454 0.7441 4.0407 36 1 7.0717 3.7264 0.5267 37 1 8.8442 3.6417 0.6661 38 1 8.5338 4.7687 -2.7610 39 1 8.8324 0.4816 2.4905 40 1 9.3271 0.9122 0.8358 41 1 9.8141 2.9917 3.0320 42 1 11.3457 2.0132 0.4761 43 1 11.8158 3.4439 1.5410 44 1 12.0423 1.8875 3.5319 45 1 11.5722 0.4569 2.4670 46 1 4.8723 3.0649 3.0818 47 1 5.5053 3.7441 1.5632 48 1 3.8539 3.0824 1.6221 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355261310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:21 Heat of formation + Delta-G solvation = 138.677244 kcal Electronic energy + Delta-G solvation = -27361.442538 eV Core-core repulsion = 23840.547728 eV Total energy + Delta-G solvation = -3520.894810 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.85525 -39.47571 -38.00722 -36.98639 -35.63910 -34.63804 -33.87730 -31.31311 -29.94460 -29.26482 -28.41903 -27.04214 -25.67604 -24.48298 -23.65694 -23.12212 -21.82979 -21.30518 -20.50696 -18.94121 -18.77539 -17.90503 -17.49399 -17.05487 -16.80635 -16.28124 -16.15143 -15.44272 -15.30823 -15.09021 -14.77893 -14.66317 -14.60883 -14.07581 -14.01818 -13.87393 -13.50714 -13.21959 -13.11651 -12.97746 -12.59418 -12.50187 -12.41837 -12.36432 -12.29829 -12.16846 -12.06385 -11.93902 -11.78252 -11.31936 -11.18294 -11.12320 -10.98508 -10.90627 -10.71272 -10.64750 -10.36529 -9.13635 -8.26695 -6.38595 0.92971 1.24999 1.29229 1.41442 1.47651 1.86263 1.96810 2.06659 2.31081 2.89478 3.03266 3.13238 3.24354 3.57024 3.76967 3.86830 3.97750 4.03281 4.05072 4.11774 4.20881 4.30263 4.36984 4.41194 4.47391 4.58566 4.59552 4.63891 4.66003 4.79932 4.84065 4.93721 4.95267 5.03492 5.07747 5.10063 5.16936 5.17815 5.22746 5.27058 5.27575 5.34365 5.39423 5.40069 5.66039 5.74588 5.90970 6.02798 6.50355 6.74233 6.76088 7.30769 7.93280 8.78277 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.011573 B = 0.004742 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.843273 B = 5903.868960 C = 7454.354737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.215 4.215 3 C -0.001 4.001 4 C 0.021 3.979 5 H 0.107 0.893 6 C -0.105 4.105 7 C -0.145 4.145 8 C 0.179 3.821 9 N -0.319 5.319 10 N -0.367 5.367 11 C 0.388 3.612 12 N -0.457 5.457 13 C 0.212 3.788 14 C -0.552 4.552 15 H 0.047 0.953 16 C 0.032 3.968 17 N -0.911 5.911 18 Si 0.936 3.064 19 H -0.285 1.285 20 H -0.276 1.276 21 H -0.271 1.271 22 C 0.118 3.882 23 C -0.150 4.150 24 C -0.182 4.182 25 C -0.152 4.152 26 N -0.477 5.477 27 C 0.073 3.927 28 H 0.251 0.749 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.024 0.976 35 H 0.070 0.930 36 H 0.018 0.982 37 H 0.042 0.958 38 H 0.266 0.734 39 H 0.067 0.933 40 H 0.032 0.968 41 H 0.111 0.889 42 H 0.072 0.928 43 H 0.099 0.901 44 H 0.119 0.881 45 H 0.094 0.906 46 H 0.100 0.900 47 H 0.078 0.922 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.052 -2.830 11.105 15.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.215 4.215 3 C -0.039 4.039 4 C 0.000 4.000 5 H 0.125 0.875 6 C -0.143 4.143 7 C -0.202 4.202 8 C -0.090 4.090 9 N -0.158 5.158 10 N -0.211 5.211 11 C 0.031 3.969 12 N -0.180 5.180 13 C 0.087 3.913 14 C -0.591 4.591 15 H 0.065 0.935 16 C -0.169 4.169 17 N -0.551 5.551 18 Si 0.763 3.237 19 H -0.211 1.211 20 H -0.202 1.202 21 H -0.196 1.196 22 C -0.009 4.009 23 C -0.168 4.168 24 C -0.219 4.219 25 C -0.190 4.190 26 N -0.170 5.170 27 C -0.068 4.068 28 H 0.267 0.733 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.089 0.911 36 H 0.035 0.965 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.050 0.950 41 H 0.129 0.871 42 H 0.090 0.910 43 H 0.117 0.883 44 H 0.137 0.863 45 H 0.113 0.887 46 H 0.119 0.881 47 H 0.097 0.903 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.513 -3.704 11.038 15.687 hybrid contribution 0.042 0.649 -1.778 1.893 sum -10.471 -3.055 9.260 14.308 Atomic orbital electron populations 1.25649 0.96487 0.99446 0.98603 1.22885 0.94216 1.02038 1.02347 1.18515 0.85854 1.03228 0.96259 1.19647 0.81752 1.02396 0.96192 0.87465 1.21525 1.02149 0.97091 0.93520 1.21715 0.99867 1.02276 0.96327 1.24866 0.97298 0.82711 1.04096 1.73682 0.95676 1.26675 1.19726 1.74518 1.14857 1.09269 1.22423 1.22569 0.85111 0.91153 0.98096 1.59330 1.00281 1.15649 1.42774 1.19587 0.97362 0.89730 0.84596 1.21899 1.49689 0.93945 0.93566 0.93487 1.25429 0.94602 0.95439 1.01453 1.69986 1.49348 1.07392 1.28353 0.85832 0.78314 0.78612 0.80937 1.21060 1.20168 1.19586 1.21302 0.86848 0.93704 0.99078 1.22085 0.88759 1.02425 1.03546 1.22948 1.02422 1.01325 0.95222 1.23041 0.97734 0.98664 0.99519 1.46116 1.05250 1.12527 1.53113 1.22296 1.01607 0.79819 1.03095 0.73272 0.89460 0.90839 0.88960 0.92214 0.91263 0.95657 0.91141 0.96451 0.93959 0.92441 0.91454 0.94959 0.87100 0.90965 0.88268 0.86279 0.88743 0.88120 0.90328 0.87099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.16 19.25 74.32 1.43 -1.73 16 2 C -0.21 -4.75 12.23 31.13 0.38 -4.37 16 3 C 0.00 -0.02 5.17 28.79 0.15 0.13 16 4 C 0.02 0.52 2.20 -11.54 -0.03 0.50 16 5 H 0.11 2.20 6.83 -2.38 -0.02 2.18 16 6 C -0.10 -2.27 5.28 30.59 0.16 -2.11 16 7 C -0.14 -2.93 9.73 71.98 0.70 -2.23 16 8 C 0.18 6.24 5.56 137.64 0.76 7.01 16 9 N -0.32 -13.66 12.18 -49.54 -0.60 -14.26 16 10 N -0.37 -17.42 10.82 -58.00 -0.63 -18.05 16 11 C 0.39 17.02 5.65 260.11 1.47 18.49 16 12 N -0.46 -19.76 4.70 -710.36 -3.34 -23.10 16 13 C 0.21 10.49 4.96 85.56 0.42 10.92 16 14 C -0.55 -30.70 7.54 25.60 0.19 -30.50 16 15 H 0.05 2.82 6.41 -2.91 -0.02 2.80 16 16 C 0.03 1.77 5.46 84.66 0.46 2.23 16 17 N -0.91 -51.77 13.29 21.45 0.28 -51.48 16 18 Si 0.94 45.56 29.54 68.60 2.03 47.59 16 19 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 20 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 21 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 22 C 0.12 4.85 4.61 86.30 0.40 5.24 16 23 C -0.15 -5.09 4.98 -10.80 -0.05 -5.14 16 24 C -0.18 -6.08 10.13 30.62 0.31 -5.77 16 25 C -0.15 -4.15 10.26 30.62 0.31 -3.83 16 26 N -0.48 -17.29 3.21 -538.19 -1.73 -19.02 16 27 C 0.07 1.97 10.99 127.77 1.40 3.37 16 28 H 0.25 2.09 7.80 -4.41 -0.03 2.06 16 29 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 31 H 0.09 1.64 7.23 -2.38 -0.02 1.62 16 32 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.02 0.65 7.38 -2.38 -0.02 0.63 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.02 0.90 6.20 -2.39 -0.01 0.88 16 37 H 0.04 2.21 7.25 -2.39 -0.02 2.19 16 38 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 39 H 0.07 2.71 7.83 -2.39 -0.02 2.69 16 40 H 0.03 1.53 6.59 -2.38 -0.02 1.52 16 41 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 42 H 0.07 2.77 8.04 -2.38 -0.02 2.75 16 43 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 44 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 45 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 46 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.08 2.43 6.15 -2.39 -0.01 2.42 16 48 H 0.11 2.25 7.02 -2.38 -0.02 2.23 16 Total: -1.00 -69.92 393.49 5.43 -64.49 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 0.93 Total: 21.66 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: 8.48 Total: -7.81 kcal Atomic # 7 Polarization: -119.91 SS G_CDS: -6.01 Total: -125.92 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -69.92 5.43 -64.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355261310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.164 kcal (2) G-P(sol) polarization free energy of solvation -69.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds