Wall clock time and date at job start Tue Mar 31 2020 11:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 120.00300 * 2 1 4 4 N 1.46498 * 109.47021 * 125.00142 * 3 2 1 5 5 C 1.36739 * 127.13628 * 270.70827 * 4 3 2 6 6 C 1.50703 * 126.34631 * 359.97209 * 5 4 3 7 7 H 1.09003 * 109.47187 * 0.28247 * 6 5 4 8 8 C 1.53000 * 109.47318 * 120.28089 * 6 5 4 9 9 C 1.53002 * 109.47045 * 240.28056 * 6 5 4 10 10 C 1.50693 * 109.47064 * 174.99829 * 9 6 5 11 11 H 1.07994 * 120.00174 * 0.02562 * 10 9 6 12 12 C 1.37877 * 119.99784 * 180.02562 * 10 9 6 13 13 N 1.31520 * 119.99796 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 120.00220 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47096 * 89.99852 * 14 12 10 16 16 H 1.48495 * 109.47045 * 209.99849 * 14 12 10 17 17 H 1.48498 * 109.47000 * 330.00103 * 14 12 10 18 18 N 1.30294 * 107.30447 * 180.22628 * 5 4 3 19 19 N 1.28524 * 110.05373 * 359.78421 * 18 5 4 20 20 C 1.31215 * 109.86174 * 359.97438 * 19 18 5 21 21 N 1.38579 * 126.47586 * 179.97438 * 20 19 18 22 22 C 1.46764 * 111.14816 * 272.88770 * 21 20 19 23 23 C 1.50141 * 110.42263 * 174.10936 * 22 21 20 24 24 C 1.29826 * 123.28624 * 343.08762 * 23 22 21 25 25 C 1.50702 * 118.55625 * 180.37387 * 24 23 22 26 26 C 1.50303 * 122.89083 * 0.39298 * 24 23 22 27 27 C 1.47242 * 110.99703 * 35.98567 * 21 20 19 28 28 H 1.08002 * 119.99784 * 0.02562 * 1 2 3 29 29 H 1.07993 * 120.00186 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99464 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.46907 * 5.00083 * 3 2 1 32 32 H 1.09003 * 109.46772 * 245.00071 * 3 2 1 33 33 H 1.08999 * 109.47215 * 300.00174 * 8 6 5 34 34 H 1.09003 * 109.46863 * 59.99960 * 8 6 5 35 35 H 1.08998 * 109.47420 * 179.97438 * 8 6 5 36 36 H 1.08997 * 109.46924 * 295.00425 * 9 6 5 37 37 H 1.09004 * 109.46492 * 55.00365 * 9 6 5 38 38 H 0.97000 * 119.99818 * 179.97438 * 13 12 10 39 39 H 1.09004 * 109.14975 * 53.88866 * 22 21 20 40 40 H 1.08993 * 109.24343 * 294.39201 * 22 21 20 41 41 H 1.07995 * 118.35910 * 163.11079 * 23 22 21 42 42 H 1.08995 * 109.46798 * 270.02330 * 25 24 23 43 43 H 1.09003 * 109.46983 * 30.02003 * 25 24 23 44 44 H 1.09001 * 109.47188 * 150.02150 * 25 24 23 45 45 H 1.09001 * 109.43494 * 223.40442 * 26 24 23 46 46 H 1.09006 * 109.39006 * 103.53362 * 26 24 23 47 47 H 1.09000 * 109.63558 * 48.11566 * 27 21 20 48 48 H 1.09002 * 109.64088 * 287.70628 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.7407 1.7810 2.3978 6 6 1.4385 2.3492 2.9004 7 1 0.7058 2.3475 2.0933 8 6 0.9224 1.4942 4.0594 9 6 1.6609 3.7835 3.3843 10 6 0.3386 4.3936 3.7718 11 1 -0.5695 3.8160 3.6824 12 6 0.2882 5.6893 4.2406 13 7 -0.8658 6.2216 4.5794 14 14 1.8589 6.6886 4.3947 15 1 2.1063 7.4205 3.1265 16 1 1.7196 7.6610 5.5083 17 1 2.9993 5.7787 4.6717 18 7 3.8356 1.6318 3.0881 19 7 4.7549 1.1186 2.3508 20 6 4.2917 0.9107 1.1409 21 7 4.9905 0.3713 0.0727 22 6 5.7160 1.4122 -0.6651 23 6 6.5791 0.7959 -1.7280 24 6 6.9018 -0.4615 -1.7434 25 6 7.7821 -0.9657 -2.8578 26 6 6.4358 -1.4366 -0.6988 27 6 5.9218 -0.6753 0.5259 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9352 -0.0004 30 1 1.8499 -0.9354 -0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6213 1.4025 -0.9314 33 1 0.7640 0.4723 3.7147 34 1 1.6551 1.4959 4.8665 35 1 -0.0192 1.9054 4.4232 36 1 2.3251 3.7765 4.2485 37 1 2.1115 4.3710 2.5843 38 1 -0.9012 7.1329 4.9095 39 1 6.3428 1.9717 0.0293 40 1 4.9991 2.0890 -1.1298 41 1 6.9503 1.4305 -2.5191 42 1 7.1610 -1.2938 -3.6912 43 1 8.4423 -0.1645 -3.1901 44 1 8.3797 -1.8033 -2.4982 45 1 7.2668 -2.0777 -0.4047 46 1 5.6326 -2.0493 -1.1084 47 1 5.4029 -1.3631 1.1936 48 1 6.7601 -0.2174 1.0510 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355900790.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:45 Heat of formation + Delta-G solvation = 113.482670 kcal Electronic energy + Delta-G solvation = -26969.621903 eV Core-core repulsion = 23447.634574 eV Total energy + Delta-G solvation = -3521.987329 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.74274 -39.38129 -36.18330 -35.59673 -34.66426 -32.64831 -32.17399 -31.19551 -29.62229 -27.89426 -27.22024 -26.68428 -24.23097 -23.85767 -23.39882 -21.62576 -21.18265 -20.00267 -19.18660 -17.81103 -17.34974 -16.89425 -16.34892 -16.08486 -15.26245 -15.03938 -14.72247 -14.37120 -14.24238 -13.90220 -13.83581 -13.64363 -13.51607 -13.44395 -12.83624 -12.64267 -12.42587 -12.23630 -12.14448 -11.99362 -11.62849 -11.50326 -11.37338 -11.18069 -11.05332 -10.86112 -10.82363 -10.38830 -10.15092 -10.05659 -9.86121 -9.74132 -9.66113 -9.22248 -9.18342 -8.96827 -8.55017 -8.31849 -6.06614 -4.05105 1.82190 1.88442 2.03448 2.60008 3.17594 3.32041 3.40649 3.49617 3.67753 4.36118 4.46082 4.48356 4.61372 4.72024 4.82746 4.88730 4.94724 5.04661 5.07495 5.20314 5.24105 5.26763 5.28134 5.38451 5.39135 5.41591 5.51189 5.56006 5.59918 5.69985 5.71415 5.84889 5.94793 5.99914 6.11192 6.17673 6.31592 6.39656 6.48699 6.52754 6.64153 6.67134 6.71344 6.79451 7.00691 7.16234 7.35622 7.41059 7.74142 8.47686 8.95910 9.08794 9.56010 11.05952 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.016995 B = 0.003475 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.119572 B = 8054.507497 C = 8761.150937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.176 4.176 3 C 0.140 3.860 4 N -0.466 5.466 5 C 0.217 3.783 6 C 0.009 3.991 7 H 0.077 0.923 8 C -0.126 4.126 9 C 0.001 3.999 10 C -0.518 4.518 11 H 0.077 0.923 12 C 0.071 3.929 13 N -0.901 5.901 14 Si 0.872 3.128 15 H -0.279 1.279 16 H -0.287 1.287 17 H -0.261 1.261 18 N -0.288 5.288 19 N -0.315 5.315 20 C 0.323 3.677 21 N -0.453 5.453 22 C 0.091 3.909 23 C -0.161 4.161 24 C -0.116 4.116 25 C -0.119 4.119 26 C -0.079 4.079 27 C 0.071 3.929 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.034 0.966 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.032 0.968 37 H 0.008 0.992 38 H 0.263 0.737 39 H 0.060 0.940 40 H 0.084 0.916 41 H 0.116 0.884 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.526 -15.862 -16.232 25.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.195 4.195 3 C 0.018 3.982 4 N -0.158 5.158 5 C -0.050 4.050 6 C -0.012 4.012 7 H 0.096 0.904 8 C -0.184 4.184 9 C -0.038 4.038 10 C -0.556 4.556 11 H 0.095 0.905 12 C -0.130 4.130 13 N -0.540 5.540 14 Si 0.699 3.301 15 H -0.205 1.205 16 H -0.213 1.213 17 H -0.186 1.186 18 N -0.127 5.127 19 N -0.159 5.159 20 C -0.033 4.033 21 N -0.178 5.178 22 C -0.035 4.035 23 C -0.179 4.179 24 C -0.116 4.116 25 C -0.176 4.176 26 C -0.116 4.116 27 C -0.057 4.057 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.131 0.869 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.050 0.950 37 H 0.026 0.974 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.103 0.897 41 H 0.134 0.866 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.100 0.900 46 H 0.100 0.900 47 H 0.101 0.899 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.091 -15.871 -15.339 25.167 hybrid contribution 0.407 0.980 -0.714 1.279 sum 12.497 -14.890 -16.054 25.212 Atomic orbital electron populations 1.24006 0.95540 1.02765 0.97439 1.22990 0.96121 0.97855 1.02501 1.20915 0.91894 0.97590 0.87827 1.46355 1.10134 1.47812 1.11517 1.25647 0.99945 0.99192 0.80222 1.19755 0.85960 0.97443 0.98057 0.90442 1.21670 1.02700 0.96733 0.97309 1.19604 0.98544 0.89080 0.96555 1.21011 0.92597 0.98381 1.43579 0.90527 1.24936 0.95806 0.97612 0.94660 1.69898 1.24478 1.15095 1.44501 0.86884 0.84918 0.80383 0.77902 1.20468 1.21261 1.18563 1.74035 0.97141 1.16501 1.25046 1.74551 1.23736 1.17148 1.00451 1.22216 0.84621 1.03313 0.93188 1.58944 1.27820 1.11853 1.19226 1.20995 0.95600 0.92470 0.94471 1.21948 1.00478 0.96189 0.99315 1.20988 0.98395 0.94938 0.97318 1.20902 0.98467 1.01439 0.96756 1.20562 1.00759 0.96872 0.93443 1.22115 0.94506 0.92590 0.96443 0.87664 0.87780 0.86868 0.87994 0.88080 0.94670 0.92159 0.90156 0.95007 0.97350 0.92681 0.92244 0.89729 0.86632 0.91493 0.91910 0.91855 0.90043 0.90008 0.89931 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 14.32 29.02 0.42 -1.18 16 2 C -0.18 -1.95 9.85 -36.03 -0.35 -2.31 16 3 C 0.14 1.73 6.31 -5.19 -0.03 1.70 16 4 N -0.47 -7.48 2.79 -115.37 -0.32 -7.80 16 5 C 0.22 4.18 6.58 -154.01 -1.01 3.16 16 6 C 0.01 0.18 2.70 -91.77 -0.25 -0.07 16 7 H 0.08 1.43 6.96 -51.93 -0.36 1.07 16 8 C -0.13 -2.38 8.99 37.16 0.33 -2.04 16 9 C 0.00 0.01 3.50 -27.88 -0.10 -0.09 16 10 C -0.52 -14.12 8.96 -34.44 -0.31 -14.43 16 11 H 0.08 2.18 7.30 -52.49 -0.38 1.80 16 12 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 13 N -0.90 -27.18 13.96 55.43 0.77 -26.40 16 14 Si 0.87 21.97 27.47 -169.99 -4.67 17.30 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 17 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 18 N -0.29 -6.13 12.18 32.99 0.40 -5.73 16 19 N -0.31 -6.10 11.75 30.31 0.36 -5.74 16 20 C 0.32 5.22 6.68 -318.88 -2.13 3.09 16 21 N -0.45 -5.76 4.73 -175.98 -0.83 -6.59 16 22 C 0.09 1.04 5.60 -5.32 -0.03 1.01 16 23 C -0.16 -1.47 9.50 -35.97 -0.34 -1.82 16 24 C -0.12 -0.97 5.90 -100.93 -0.59 -1.57 16 25 C -0.12 -0.74 9.91 36.01 0.36 -0.38 16 26 C -0.08 -0.66 6.02 -28.03 -0.17 -0.83 16 27 C 0.07 0.80 5.17 -3.59 -0.02 0.78 16 28 H 0.11 1.04 7.84 -52.49 -0.41 0.63 16 29 H 0.10 0.89 8.06 -52.49 -0.42 0.46 16 30 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.10 1.24 6.91 -51.93 -0.36 0.88 16 32 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.08 1.58 6.95 -51.93 -0.36 1.22 16 36 H 0.03 0.81 7.20 -51.93 -0.37 0.44 16 37 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 40 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.12 0.88 7.87 -52.49 -0.41 0.47 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.36 7.94 -51.93 -0.41 -0.05 16 44 H 0.06 0.34 8.08 -51.93 -0.42 -0.08 16 45 H 0.08 0.55 8.13 -51.93 -0.42 0.13 16 46 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.08 0.98 8.04 -51.93 -0.42 0.56 16 48 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 LS Contribution 389.34 15.07 5.87 5.87 Total: -1.00 -32.45 389.34 -10.87 -43.32 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -8.12 Total: -1.20 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -4.33 Total: -13.02 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: 0.38 Total: -52.27 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.45 -10.87 -43.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355900790.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.804 kcal (2) G-P(sol) polarization free energy of solvation -32.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds