Wall clock time and date at job start Tue Mar 31 2020 11:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 120.00300 * 2 1 4 4 N 1.46498 * 109.47021 * 125.00142 * 3 2 1 5 5 C 1.36739 * 127.13628 * 270.70827 * 4 3 2 6 6 C 1.50703 * 126.34631 * 359.97209 * 5 4 3 7 7 H 1.09003 * 109.47187 * 0.28247 * 6 5 4 8 8 C 1.53000 * 109.47318 * 120.28089 * 6 5 4 9 9 C 1.53002 * 109.47045 * 240.28056 * 6 5 4 10 10 C 1.50693 * 109.47064 * 174.99829 * 9 6 5 11 11 H 1.07994 * 120.00174 * 0.02562 * 10 9 6 12 12 C 1.37877 * 119.99784 * 180.02562 * 10 9 6 13 13 N 1.31520 * 119.99796 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 120.00220 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47096 * 89.99852 * 14 12 10 16 16 H 1.48495 * 109.47045 * 209.99849 * 14 12 10 17 17 H 1.48498 * 109.47000 * 330.00103 * 14 12 10 18 18 N 1.30294 * 107.30447 * 180.22628 * 5 4 3 19 19 N 1.28524 * 110.05373 * 359.78421 * 18 5 4 20 20 C 1.31215 * 109.86174 * 359.97438 * 19 18 5 21 21 N 1.38579 * 126.47586 * 179.97438 * 20 19 18 22 22 C 1.46764 * 111.14816 * 272.88770 * 21 20 19 23 23 C 1.50141 * 110.42263 * 174.10936 * 22 21 20 24 24 C 1.29826 * 123.28624 * 343.08762 * 23 22 21 25 25 C 1.50702 * 118.55625 * 180.37387 * 24 23 22 26 26 C 1.50303 * 122.89083 * 0.39298 * 24 23 22 27 27 C 1.47242 * 110.99703 * 35.98567 * 21 20 19 28 28 H 1.08002 * 119.99784 * 0.02562 * 1 2 3 29 29 H 1.07993 * 120.00186 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99464 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.46907 * 5.00083 * 3 2 1 32 32 H 1.09003 * 109.46772 * 245.00071 * 3 2 1 33 33 H 1.08999 * 109.47215 * 300.00174 * 8 6 5 34 34 H 1.09003 * 109.46863 * 59.99960 * 8 6 5 35 35 H 1.08998 * 109.47420 * 179.97438 * 8 6 5 36 36 H 1.08997 * 109.46924 * 295.00425 * 9 6 5 37 37 H 1.09004 * 109.46492 * 55.00365 * 9 6 5 38 38 H 0.97000 * 119.99818 * 179.97438 * 13 12 10 39 39 H 1.09004 * 109.14975 * 53.88866 * 22 21 20 40 40 H 1.08993 * 109.24343 * 294.39201 * 22 21 20 41 41 H 1.07995 * 118.35910 * 163.11079 * 23 22 21 42 42 H 1.08995 * 109.46798 * 270.02330 * 25 24 23 43 43 H 1.09003 * 109.46983 * 30.02003 * 25 24 23 44 44 H 1.09001 * 109.47188 * 150.02150 * 25 24 23 45 45 H 1.09001 * 109.43494 * 223.40442 * 26 24 23 46 46 H 1.09006 * 109.39006 * 103.53362 * 26 24 23 47 47 H 1.09000 * 109.63558 * 48.11566 * 27 21 20 48 48 H 1.09002 * 109.64088 * 287.70628 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.7407 1.7810 2.3978 6 6 1.4385 2.3492 2.9004 7 1 0.7058 2.3475 2.0933 8 6 0.9224 1.4942 4.0594 9 6 1.6609 3.7835 3.3843 10 6 0.3386 4.3936 3.7718 11 1 -0.5695 3.8160 3.6824 12 6 0.2882 5.6893 4.2406 13 7 -0.8658 6.2216 4.5794 14 14 1.8589 6.6886 4.3947 15 1 2.1063 7.4205 3.1265 16 1 1.7196 7.6610 5.5083 17 1 2.9993 5.7787 4.6717 18 7 3.8356 1.6318 3.0881 19 7 4.7549 1.1186 2.3508 20 6 4.2917 0.9107 1.1409 21 7 4.9905 0.3713 0.0727 22 6 5.7160 1.4122 -0.6651 23 6 6.5791 0.7959 -1.7280 24 6 6.9018 -0.4615 -1.7434 25 6 7.7821 -0.9657 -2.8578 26 6 6.4358 -1.4366 -0.6988 27 6 5.9218 -0.6753 0.5259 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9352 -0.0004 30 1 1.8499 -0.9354 -0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6213 1.4025 -0.9314 33 1 0.7640 0.4723 3.7147 34 1 1.6551 1.4959 4.8665 35 1 -0.0192 1.9054 4.4232 36 1 2.3251 3.7765 4.2485 37 1 2.1115 4.3710 2.5843 38 1 -0.9012 7.1329 4.9095 39 1 6.3428 1.9717 0.0293 40 1 4.9991 2.0890 -1.1298 41 1 6.9503 1.4305 -2.5191 42 1 7.1610 -1.2938 -3.6912 43 1 8.4423 -0.1645 -3.1901 44 1 8.3797 -1.8033 -2.4982 45 1 7.2668 -2.0777 -0.4047 46 1 5.6326 -2.0493 -1.1084 47 1 5.4029 -1.3631 1.1936 48 1 6.7601 -0.2174 1.0510 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355900790.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:44 Heat of formation + Delta-G solvation = 97.455134 kcal Electronic energy + Delta-G solvation = -26970.316909 eV Core-core repulsion = 23447.634574 eV Total energy + Delta-G solvation = -3522.682335 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -44.10752 -40.27870 -37.43603 -36.98097 -35.71621 -34.30196 -33.66319 -32.00240 -30.85074 -29.51272 -28.45513 -27.69937 -25.75979 -24.85209 -24.38121 -23.27935 -22.31376 -21.00647 -20.62958 -19.11669 -18.71303 -18.26860 -17.53432 -17.24653 -16.33211 -16.17613 -16.08714 -15.60890 -15.49210 -15.25086 -14.92717 -14.70729 -14.64055 -14.47942 -14.18088 -13.89053 -13.59661 -13.45444 -13.11933 -12.97042 -12.87661 -12.79829 -12.68525 -12.58948 -12.42314 -12.18270 -12.02017 -11.84764 -11.81175 -11.60062 -11.57805 -11.27974 -11.08730 -10.76172 -10.53593 -10.40394 -9.81679 -9.55512 -8.28521 -6.29860 0.63901 0.88518 1.23765 1.30286 1.35475 1.47586 1.54315 1.72803 2.34743 2.60719 3.06945 3.34769 3.60060 3.65052 3.77344 3.80180 3.87487 4.05744 4.10577 4.14623 4.26461 4.27517 4.32656 4.45372 4.47184 4.50527 4.55021 4.66409 4.73294 4.78690 4.87919 4.90748 4.94925 4.97781 5.01309 5.08686 5.09041 5.17511 5.20343 5.30883 5.38251 5.52134 5.56043 5.58486 5.62981 5.65690 5.73017 5.99486 6.17755 6.27459 6.75779 7.34021 7.67245 8.86780 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.016995 B = 0.003475 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.119572 B = 8054.507497 C = 8761.150937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.187 4.187 3 C 0.134 3.866 4 N -0.460 5.460 5 C 0.206 3.794 6 C 0.018 3.982 7 H 0.093 0.907 8 C -0.118 4.118 9 C 0.008 3.992 10 C -0.512 4.512 11 H 0.057 0.943 12 C 0.019 3.981 13 N -0.941 5.941 14 Si 0.928 3.072 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.264 1.264 18 N -0.324 5.324 19 N -0.349 5.349 20 C 0.342 3.658 21 N -0.446 5.446 22 C 0.092 3.908 23 C -0.175 4.175 24 C -0.111 4.111 25 C -0.117 4.117 26 C -0.074 4.074 27 C 0.069 3.931 28 H 0.106 0.894 29 H 0.122 0.878 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.059 0.941 34 H 0.046 0.954 35 H 0.067 0.933 36 H 0.014 0.986 37 H 0.005 0.995 38 H 0.266 0.734 39 H 0.039 0.961 40 H 0.087 0.913 41 H 0.133 0.867 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.102 0.898 46 H 0.091 0.909 47 H 0.074 0.926 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.644 -17.340 -18.677 28.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.206 4.206 3 C 0.013 3.987 4 N -0.152 5.152 5 C -0.062 4.062 6 C -0.003 4.003 7 H 0.111 0.889 8 C -0.176 4.176 9 C -0.030 4.030 10 C -0.550 4.550 11 H 0.076 0.924 12 C -0.179 4.179 13 N -0.582 5.582 14 Si 0.753 3.247 15 H -0.193 1.193 16 H -0.207 1.207 17 H -0.188 1.188 18 N -0.163 5.163 19 N -0.193 5.193 20 C -0.016 4.016 21 N -0.172 5.172 22 C -0.034 4.034 23 C -0.193 4.193 24 C -0.111 4.111 25 C -0.173 4.173 26 C -0.111 4.111 27 C -0.058 4.058 28 H 0.125 0.875 29 H 0.140 0.860 30 H 0.131 0.869 31 H 0.122 0.878 32 H 0.137 0.863 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.032 0.968 37 H 0.023 0.977 38 H 0.075 0.925 39 H 0.057 0.943 40 H 0.106 0.894 41 H 0.151 0.849 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.121 0.879 46 H 0.109 0.891 47 H 0.092 0.908 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 13.210 -17.359 -17.810 28.160 hybrid contribution 0.034 1.335 -0.019 1.335 sum 13.243 -16.024 -17.829 27.386 Atomic orbital electron populations 1.24204 0.95197 1.03726 0.95375 1.22880 0.96401 0.97040 1.04311 1.21228 0.91751 0.98573 0.87138 1.46501 1.10513 1.46839 1.11318 1.25267 0.99197 1.00266 0.81506 1.19528 0.86931 0.95079 0.98788 0.88904 1.21570 1.01459 0.97946 0.96665 1.19436 0.96176 0.91683 0.95733 1.21244 0.93330 0.98099 1.42346 0.92445 1.25667 0.98403 0.98966 0.94833 1.70005 1.26366 1.15703 1.46094 0.85995 0.81312 0.79034 0.78375 1.19346 1.20676 1.18832 1.73934 0.98123 1.17588 1.26655 1.74472 1.24039 1.18863 1.01914 1.22589 0.84756 1.01083 0.93134 1.59222 1.28226 1.12139 1.17564 1.21021 0.95627 0.92261 0.94522 1.21946 1.01089 0.96934 0.99364 1.21248 0.97721 0.94590 0.97537 1.20919 0.98330 1.01997 0.96058 1.20591 1.01699 0.96768 0.92026 1.22200 0.93598 0.92117 0.97926 0.87530 0.86009 0.86875 0.87831 0.86318 0.92160 0.93445 0.91379 0.96756 0.97656 0.92486 0.94308 0.89445 0.84933 0.90595 0.91305 0.90755 0.87934 0.89107 0.90777 0.93802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 14.32 67.78 0.97 -1.61 16 2 C -0.19 -3.77 9.85 25.65 0.25 -3.52 16 3 C 0.13 3.08 6.31 85.63 0.54 3.62 16 4 N -0.46 -14.40 2.79 -518.91 -1.45 -15.85 16 5 C 0.21 7.91 6.58 137.64 0.91 8.81 16 6 C 0.02 0.70 2.70 -11.54 -0.03 0.67 16 7 H 0.09 3.34 6.96 -2.39 -0.02 3.32 16 8 C -0.12 -4.45 8.99 71.98 0.65 -3.80 16 9 C 0.01 0.39 3.50 29.85 0.10 0.50 16 10 C -0.51 -28.28 8.96 25.60 0.23 -28.05 16 11 H 0.06 3.33 7.30 -2.91 -0.02 3.31 16 12 C 0.02 1.10 5.47 84.65 0.46 1.57 16 13 N -0.94 -57.51 13.96 21.45 0.30 -57.21 16 14 Si 0.93 45.62 27.47 68.60 1.88 47.50 16 15 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 16 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 17 H -0.26 -12.99 6.54 99.48 0.65 -12.34 16 18 N -0.32 -13.96 12.18 -49.53 -0.60 -14.57 16 19 N -0.35 -13.70 11.75 -58.01 -0.68 -14.38 16 20 C 0.34 10.91 6.68 260.11 1.74 12.65 16 21 N -0.45 -10.87 4.73 -710.68 -3.36 -14.23 16 22 C 0.09 2.02 5.60 85.41 0.48 2.49 16 23 C -0.18 -2.84 9.50 26.68 0.25 -2.59 16 24 C -0.11 -1.55 5.90 -15.40 -0.09 -1.64 16 25 C -0.12 -1.05 9.91 71.24 0.71 -0.34 16 26 C -0.07 -1.04 6.02 29.75 0.18 -0.86 16 27 C 0.07 1.48 5.17 86.27 0.45 1.93 16 28 H 0.11 1.86 7.84 -2.91 -0.02 1.83 16 29 H 0.12 1.71 8.06 -2.91 -0.02 1.69 16 30 H 0.11 2.30 8.06 -2.91 -0.02 2.28 16 31 H 0.10 2.36 6.91 -2.39 -0.02 2.34 16 32 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.07 2.70 6.95 -2.39 -0.02 2.68 16 36 H 0.01 0.73 7.20 -2.39 -0.02 0.72 16 37 H 0.01 0.25 7.57 -2.38 -0.02 0.23 16 38 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 39 H 0.04 1.01 8.10 -2.39 -0.02 0.99 16 40 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.13 1.69 7.87 -2.91 -0.02 1.67 16 42 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.07 0.56 7.94 -2.39 -0.02 0.55 16 44 H 0.07 0.53 8.08 -2.39 -0.02 0.51 16 45 H 0.10 1.07 8.13 -2.39 -0.02 1.05 16 46 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 47 H 0.07 1.71 8.04 -2.39 -0.02 1.69 16 48 H 0.04 1.07 8.09 -2.39 -0.02 1.05 16 Total: -1.00 -70.71 389.34 4.74 -65.97 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.86 Total: 12.95 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: 7.79 Total: -10.18 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -5.80 Total: -116.24 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.88 Total: 47.50 kcal Total: -70.71 4.74 -65.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355900790.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.426 kcal (2) G-P(sol) polarization free energy of solvation -70.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds