Wall clock time and date at job start Tue Mar 31 2020 11:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 119.99888 * 2 1 4 4 N 1.46504 * 109.47142 * 124.99960 * 3 2 1 5 5 C 1.36735 * 127.13758 * 270.70538 * 4 3 2 6 6 C 1.50700 * 126.34859 * 359.97438 * 5 4 3 7 7 H 1.09000 * 109.47045 * 0.02562 * 6 5 4 8 8 C 1.53006 * 109.47247 * 240.00238 * 6 5 4 9 9 C 1.53000 * 109.47450 * 119.99994 * 6 5 4 10 10 C 1.50702 * 109.47265 * 185.00282 * 9 6 5 11 11 H 1.07996 * 119.99764 * 359.97438 * 10 9 6 12 12 C 1.37877 * 119.99893 * 180.02562 * 10 9 6 13 13 N 1.31513 * 119.99742 * 179.97438 * 12 10 9 14 14 Si 1.86796 * 120.00113 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47236 * 89.99788 * 14 12 10 16 16 H 1.48498 * 109.47326 * 209.99804 * 14 12 10 17 17 H 1.48499 * 109.47238 * 330.00404 * 14 12 10 18 18 N 1.30293 * 107.31009 * 180.02562 * 5 4 3 19 19 N 1.28531 * 110.05139 * 359.72648 * 18 5 4 20 20 C 1.31224 * 109.85689 * 0.45043 * 19 18 5 21 21 N 1.38583 * 126.47347 * 179.82007 * 20 19 18 22 22 C 1.46765 * 111.14557 * 272.57565 * 21 20 19 23 23 C 1.50142 * 110.41720 * 174.11165 * 22 21 20 24 24 C 1.29826 * 123.28911 * 343.08366 * 23 22 21 25 25 C 1.50693 * 118.55618 * 180.37484 * 24 23 22 26 26 C 1.50308 * 122.88624 * 0.39652 * 24 23 22 27 27 C 1.47240 * 110.99600 * 35.67369 * 21 20 19 28 28 H 1.08003 * 120.00070 * 180.02562 * 1 2 3 29 29 H 1.07999 * 119.99885 * 359.97438 * 1 2 3 30 30 H 1.07999 * 119.99885 * 180.02562 * 2 1 3 31 31 H 1.08995 * 109.47161 * 5.00041 * 3 2 1 32 32 H 1.08994 * 109.47131 * 244.99971 * 3 2 1 33 33 H 1.08996 * 109.47012 * 59.99812 * 8 6 5 34 34 H 1.09005 * 109.46871 * 179.97438 * 8 6 5 35 35 H 1.09000 * 109.46981 * 299.99896 * 8 6 5 36 36 H 1.09003 * 109.47171 * 305.00357 * 9 6 5 37 37 H 1.09001 * 109.47168 * 65.00067 * 9 6 5 38 38 H 0.97004 * 119.99673 * 179.97438 * 13 12 10 39 39 H 1.09004 * 109.14881 * 53.89013 * 22 21 20 40 40 H 1.08994 * 109.23805 * 294.38737 * 22 21 20 41 41 H 1.08000 * 118.35221 * 163.06937 * 23 22 21 42 42 H 1.08995 * 109.46990 * 270.02294 * 25 24 23 43 43 H 1.09000 * 109.47396 * 30.02534 * 25 24 23 44 44 H 1.08997 * 109.47177 * 150.02106 * 25 24 23 45 45 H 1.09007 * 109.42776 * 223.40277 * 26 24 23 46 46 H 1.09005 * 109.38462 * 103.53460 * 26 24 23 47 47 H 1.09005 * 109.63676 * 48.11429 * 27 21 20 48 48 H 1.09002 * 109.63812 * 287.70245 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.7406 1.7812 2.3978 6 6 1.4384 2.3494 2.9004 7 1 0.7071 2.3518 2.0921 8 6 1.6622 3.7814 3.3907 9 6 0.9189 1.4903 4.0549 10 6 -0.4410 1.9844 4.4764 11 1 -0.8896 2.8272 3.9716 12 6 -1.1119 1.3613 5.5072 13 7 -2.2984 1.7928 5.8753 14 14 -0.3356 -0.0959 6.3808 15 1 0.4713 0.3882 7.5297 16 1 -1.4026 -1.0039 6.8730 17 1 0.5419 -0.8304 5.4344 18 7 3.8343 1.6281 3.0893 19 7 4.7524 1.1113 2.3532 20 6 4.2928 0.9142 1.1400 21 7 4.9926 0.3777 0.0710 22 6 5.7213 1.4201 -0.6614 23 6 6.5852 0.8064 -1.7251 24 6 6.9057 -0.4515 -1.7448 25 6 7.7870 -0.9530 -2.8595 26 6 6.4359 -1.4298 -0.7048 27 6 5.9211 -0.6723 0.5218 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6213 1.4026 -0.9313 33 1 2.0322 4.3934 2.5682 34 1 0.7201 4.1924 3.7537 35 1 2.3934 3.7786 4.1990 36 1 0.8438 0.4524 3.7304 37 1 1.6074 1.5587 4.8972 38 1 -2.7706 1.3542 6.6003 39 1 6.3478 1.9758 0.0363 40 1 5.0064 2.1000 -1.1248 41 1 6.9584 1.4433 -2.5134 42 1 7.1668 -1.2768 -3.6953 43 1 8.4493 -0.1518 -3.1875 44 1 8.3825 -1.7930 -2.5020 45 1 7.2654 -2.0735 -0.4117 46 1 5.6324 -2.0394 -1.1182 47 1 5.3997 -1.3618 1.1859 48 1 6.7593 -0.2180 1.0502 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355900792.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:48 Heat of formation + Delta-G solvation = 113.731948 kcal Electronic energy + Delta-G solvation = -27033.578564 eV Core-core repulsion = 23511.602045 eV Total energy + Delta-G solvation = -3521.976520 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.73477 -39.38220 -36.13658 -35.59041 -34.65693 -32.59173 -32.15749 -31.19435 -29.62209 -27.87572 -27.23498 -26.64537 -24.24560 -23.83261 -23.38929 -21.63137 -21.14428 -19.95120 -19.15311 -17.81632 -17.33642 -16.88897 -16.29340 -16.10612 -15.24538 -15.00073 -14.66525 -14.34600 -14.27127 -13.97611 -13.88858 -13.59659 -13.43109 -13.36607 -12.82838 -12.71533 -12.38955 -12.23708 -12.14140 -11.92058 -11.53967 -11.50533 -11.31396 -11.17366 -11.09791 -10.86584 -10.83375 -10.46141 -10.07519 -10.00512 -9.82818 -9.79467 -9.54157 -9.22110 -9.16319 -8.96260 -8.53563 -8.31643 -6.05569 -4.03705 1.85569 1.90474 2.08482 2.64403 3.18083 3.34788 3.41639 3.48685 3.68440 4.35815 4.47105 4.48452 4.63993 4.79580 4.82871 4.88965 4.93717 5.06744 5.09651 5.18897 5.24673 5.26760 5.29076 5.38802 5.39096 5.45272 5.50015 5.56374 5.60520 5.70964 5.84840 5.86627 5.94272 5.99556 6.10273 6.19317 6.31448 6.50547 6.53860 6.61399 6.62665 6.66657 6.70723 6.80106 6.99916 7.22243 7.36246 7.40331 7.75264 8.48710 8.96783 9.09147 9.57316 11.07035 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.019894 B = 0.003339 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.131092 B = 8383.441213 C = 8488.448043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.184 4.184 3 C 0.145 3.855 4 N -0.466 5.466 5 C 0.217 3.783 6 C 0.009 3.991 7 H 0.077 0.923 8 C -0.128 4.128 9 C 0.003 3.997 10 C -0.516 4.516 11 H 0.076 0.924 12 C 0.072 3.928 13 N -0.901 5.901 14 Si 0.874 3.126 15 H -0.275 1.275 16 H -0.288 1.288 17 H -0.267 1.267 18 N -0.289 5.289 19 N -0.315 5.315 20 C 0.323 3.677 21 N -0.453 5.453 22 C 0.093 3.907 23 C -0.163 4.163 24 C -0.114 4.114 25 C -0.119 4.119 26 C -0.080 4.080 27 C 0.070 3.930 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.033 0.967 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.014 0.986 37 H 0.026 0.974 38 H 0.263 0.737 39 H 0.059 0.941 40 H 0.083 0.917 41 H 0.116 0.884 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.083 0.917 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.324 -3.869 -19.813 25.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.203 4.203 3 C 0.022 3.978 4 N -0.158 5.158 5 C -0.050 4.050 6 C -0.012 4.012 7 H 0.096 0.904 8 C -0.186 4.186 9 C -0.036 4.036 10 C -0.554 4.554 11 H 0.094 0.906 12 C -0.130 4.130 13 N -0.540 5.540 14 Si 0.701 3.299 15 H -0.200 1.200 16 H -0.215 1.215 17 H -0.191 1.191 18 N -0.128 5.128 19 N -0.159 5.159 20 C -0.033 4.033 21 N -0.178 5.178 22 C -0.033 4.033 23 C -0.181 4.181 24 C -0.114 4.114 25 C -0.176 4.176 26 C -0.117 4.117 27 C -0.057 4.057 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.131 0.869 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.052 0.948 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.032 0.968 37 H 0.044 0.956 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.133 0.867 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.100 0.900 46 H 0.101 0.899 47 H 0.101 0.899 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.819 -4.082 -18.867 24.958 hybrid contribution -0.095 -0.631 -0.177 0.662 sum 15.724 -4.712 -19.044 25.143 Atomic orbital electron populations 1.23992 0.95461 1.02868 0.96316 1.22929 0.96151 0.97732 1.03499 1.20868 0.91653 0.97648 0.87615 1.46375 1.09953 1.47993 1.11512 1.25637 0.99697 0.99584 0.80128 1.19759 0.85640 0.96308 0.99539 0.90433 1.21706 1.03278 0.93545 1.00106 1.19572 0.97067 0.94401 0.92524 1.21001 1.00011 1.16717 1.17677 0.90578 1.24923 0.94608 0.96880 0.96569 1.69898 1.13344 1.41504 1.29281 0.86860 0.79119 0.83289 0.80590 1.20030 1.21455 1.19122 1.74029 0.97425 1.16565 1.24757 1.74549 1.23953 1.17214 1.00191 1.22208 0.84615 1.03417 0.93082 1.58932 1.27796 1.11653 1.19468 1.20972 0.95450 0.92459 0.94468 1.21937 1.00643 0.96196 0.99371 1.21000 0.98231 0.94939 0.97263 1.20903 0.98464 1.01459 0.96768 1.20571 1.00795 0.96882 0.93470 1.22122 0.94526 0.92573 0.96468 0.87687 0.87747 0.86909 0.88404 0.88209 0.94770 0.90114 0.92083 0.96763 0.95582 0.92707 0.92344 0.89844 0.86661 0.91467 0.91915 0.91834 0.90013 0.89941 0.89867 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 14.32 29.01 0.42 -1.37 16 2 C -0.18 -2.32 9.85 -36.03 -0.35 -2.68 16 3 C 0.14 1.80 6.31 -5.19 -0.03 1.76 16 4 N -0.47 -7.51 2.79 -115.37 -0.32 -7.84 16 5 C 0.22 4.18 6.58 -154.02 -1.01 3.17 16 6 C 0.01 0.17 2.70 -91.77 -0.25 -0.08 16 7 H 0.08 1.43 6.96 -51.93 -0.36 1.07 16 8 C -0.13 -2.39 8.99 37.16 0.33 -2.06 16 9 C 0.00 0.07 3.50 -27.88 -0.10 -0.03 16 10 C -0.52 -14.10 8.96 -34.44 -0.31 -14.40 16 11 H 0.08 2.17 7.30 -52.49 -0.38 1.78 16 12 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 13 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16 14 Si 0.87 22.17 27.47 -169.99 -4.67 17.50 16 15 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 17 H -0.27 -6.71 6.54 56.52 0.37 -6.34 16 18 N -0.29 -6.14 12.18 32.99 0.40 -5.74 16 19 N -0.31 -6.12 11.75 30.32 0.36 -5.76 16 20 C 0.32 5.25 6.68 -318.87 -2.13 3.12 16 21 N -0.45 -5.79 4.73 -175.98 -0.83 -6.62 16 22 C 0.09 1.01 5.60 -5.32 -0.03 0.98 16 23 C -0.16 -1.44 9.50 -35.97 -0.34 -1.78 16 24 C -0.11 -0.95 5.90 -100.93 -0.59 -1.55 16 25 C -0.12 -0.73 9.91 36.00 0.36 -0.38 16 26 C -0.08 -0.69 6.02 -28.03 -0.17 -0.86 16 27 C 0.07 0.82 5.17 -3.59 -0.02 0.80 16 28 H 0.10 1.17 8.06 -52.48 -0.42 0.74 16 29 H 0.10 1.19 7.84 -52.49 -0.41 0.78 16 30 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 31 H 0.10 1.12 6.91 -51.93 -0.36 0.76 16 32 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 1.57 6.95 -51.93 -0.36 1.21 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 16 37 H 0.03 0.66 7.57 -51.93 -0.39 0.27 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.12 0.82 7.87 -52.49 -0.41 0.41 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.35 7.94 -51.93 -0.41 -0.06 16 44 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 45 H 0.08 0.58 8.13 -51.93 -0.42 0.16 16 46 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.08 1.06 8.04 -51.93 -0.42 0.64 16 48 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 LS Contribution 389.33 15.07 5.87 5.87 Total: -1.00 -32.60 389.33 -10.87 -43.48 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -8.12 Total: -1.05 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -4.33 Total: -13.40 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: 0.38 Total: -52.39 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.60 -10.87 -43.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355900792.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.208 kcal (2) G-P(sol) polarization free energy of solvation -32.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds