Wall clock time and date at job start Tue Mar 31 2020 11:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 119.99888 * 2 1 4 4 N 1.46504 * 109.47142 * 124.99960 * 3 2 1 5 5 C 1.36735 * 127.13758 * 270.70538 * 4 3 2 6 6 C 1.50700 * 126.34859 * 359.97438 * 5 4 3 7 7 H 1.09000 * 109.47045 * 0.02562 * 6 5 4 8 8 C 1.53006 * 109.47247 * 240.00238 * 6 5 4 9 9 C 1.53000 * 109.47450 * 119.99994 * 6 5 4 10 10 C 1.50702 * 109.47265 * 185.00282 * 9 6 5 11 11 H 1.07996 * 119.99764 * 359.97438 * 10 9 6 12 12 C 1.37877 * 119.99893 * 180.02562 * 10 9 6 13 13 N 1.31513 * 119.99742 * 179.97438 * 12 10 9 14 14 Si 1.86796 * 120.00113 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47236 * 89.99788 * 14 12 10 16 16 H 1.48498 * 109.47326 * 209.99804 * 14 12 10 17 17 H 1.48499 * 109.47238 * 330.00404 * 14 12 10 18 18 N 1.30293 * 107.31009 * 180.02562 * 5 4 3 19 19 N 1.28531 * 110.05139 * 359.72648 * 18 5 4 20 20 C 1.31224 * 109.85689 * 0.45043 * 19 18 5 21 21 N 1.38583 * 126.47347 * 179.82007 * 20 19 18 22 22 C 1.46765 * 111.14557 * 272.57565 * 21 20 19 23 23 C 1.50142 * 110.41720 * 174.11165 * 22 21 20 24 24 C 1.29826 * 123.28911 * 343.08366 * 23 22 21 25 25 C 1.50693 * 118.55618 * 180.37484 * 24 23 22 26 26 C 1.50308 * 122.88624 * 0.39652 * 24 23 22 27 27 C 1.47240 * 110.99600 * 35.67369 * 21 20 19 28 28 H 1.08003 * 120.00070 * 180.02562 * 1 2 3 29 29 H 1.07999 * 119.99885 * 359.97438 * 1 2 3 30 30 H 1.07999 * 119.99885 * 180.02562 * 2 1 3 31 31 H 1.08995 * 109.47161 * 5.00041 * 3 2 1 32 32 H 1.08994 * 109.47131 * 244.99971 * 3 2 1 33 33 H 1.08996 * 109.47012 * 59.99812 * 8 6 5 34 34 H 1.09005 * 109.46871 * 179.97438 * 8 6 5 35 35 H 1.09000 * 109.46981 * 299.99896 * 8 6 5 36 36 H 1.09003 * 109.47171 * 305.00357 * 9 6 5 37 37 H 1.09001 * 109.47168 * 65.00067 * 9 6 5 38 38 H 0.97004 * 119.99673 * 179.97438 * 13 12 10 39 39 H 1.09004 * 109.14881 * 53.89013 * 22 21 20 40 40 H 1.08994 * 109.23805 * 294.38737 * 22 21 20 41 41 H 1.08000 * 118.35221 * 163.06937 * 23 22 21 42 42 H 1.08995 * 109.46990 * 270.02294 * 25 24 23 43 43 H 1.09000 * 109.47396 * 30.02534 * 25 24 23 44 44 H 1.08997 * 109.47177 * 150.02106 * 25 24 23 45 45 H 1.09007 * 109.42776 * 223.40277 * 26 24 23 46 46 H 1.09005 * 109.38462 * 103.53460 * 26 24 23 47 47 H 1.09005 * 109.63676 * 48.11429 * 27 21 20 48 48 H 1.09002 * 109.63812 * 287.70245 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.7406 1.7812 2.3978 6 6 1.4384 2.3494 2.9004 7 1 0.7071 2.3518 2.0921 8 6 1.6622 3.7814 3.3907 9 6 0.9189 1.4903 4.0549 10 6 -0.4410 1.9844 4.4764 11 1 -0.8896 2.8272 3.9716 12 6 -1.1119 1.3613 5.5072 13 7 -2.2984 1.7928 5.8753 14 14 -0.3356 -0.0959 6.3808 15 1 0.4713 0.3882 7.5297 16 1 -1.4026 -1.0039 6.8730 17 1 0.5419 -0.8304 5.4344 18 7 3.8343 1.6281 3.0893 19 7 4.7524 1.1113 2.3532 20 6 4.2928 0.9142 1.1400 21 7 4.9926 0.3777 0.0710 22 6 5.7213 1.4201 -0.6614 23 6 6.5852 0.8064 -1.7251 24 6 6.9057 -0.4515 -1.7448 25 6 7.7870 -0.9530 -2.8595 26 6 6.4359 -1.4298 -0.7048 27 6 5.9211 -0.6723 0.5218 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6213 1.4026 -0.9313 33 1 2.0322 4.3934 2.5682 34 1 0.7201 4.1924 3.7537 35 1 2.3934 3.7786 4.1990 36 1 0.8438 0.4524 3.7304 37 1 1.6074 1.5587 4.8972 38 1 -2.7706 1.3542 6.6003 39 1 6.3478 1.9758 0.0363 40 1 5.0064 2.1000 -1.1248 41 1 6.9584 1.4433 -2.5134 42 1 7.1668 -1.2768 -3.6953 43 1 8.4493 -0.1518 -3.1875 44 1 8.3825 -1.7930 -2.5020 45 1 7.2654 -2.0735 -0.4117 46 1 5.6324 -2.0394 -1.1182 47 1 5.3997 -1.3618 1.1859 48 1 6.7593 -0.2180 1.0502 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355900792.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:47 Heat of formation + Delta-G solvation = 97.595936 kcal Electronic energy + Delta-G solvation = -27034.278274 eV Core-core repulsion = 23511.602045 eV Total energy + Delta-G solvation = -3522.676230 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.09972 -40.27351 -37.43094 -36.97224 -35.70918 -34.30274 -33.66360 -31.99949 -30.84579 -29.49417 -28.46390 -27.69512 -25.74319 -24.82950 -24.38084 -23.28805 -22.31304 -21.02963 -20.60792 -19.11875 -18.69526 -18.26837 -17.51188 -17.27038 -16.39124 -16.10397 -15.94879 -15.71289 -15.59020 -15.23279 -14.89595 -14.68273 -14.60685 -14.52364 -14.16802 -13.82320 -13.60051 -13.45000 -13.12160 -12.98123 -12.86049 -12.79239 -12.71865 -12.56660 -12.49597 -12.17151 -12.00365 -11.88896 -11.73363 -11.59640 -11.58236 -11.26519 -11.11469 -10.75396 -10.53220 -10.38992 -9.80691 -9.53928 -8.28028 -6.28761 0.62396 0.91346 1.25051 1.31600 1.34811 1.44986 1.54052 1.73643 2.34604 2.61251 3.07717 3.35447 3.60785 3.65799 3.77316 3.80187 3.87984 4.05580 4.10960 4.15155 4.26530 4.29006 4.32401 4.46093 4.47707 4.50768 4.54789 4.66405 4.73300 4.78921 4.88529 4.90708 4.94861 4.97455 5.01521 5.08112 5.09361 5.18223 5.24186 5.31403 5.37915 5.53247 5.56319 5.57268 5.63142 5.65298 5.73518 6.00572 6.18650 6.28159 6.76473 7.34955 7.67741 8.87286 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.019894 B = 0.003339 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.131092 B = 8383.441213 C = 8488.448043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.193 4.193 3 C 0.139 3.861 4 N -0.460 5.460 5 C 0.206 3.794 6 C 0.017 3.983 7 H 0.093 0.907 8 C -0.121 4.121 9 C 0.011 3.989 10 C -0.509 4.509 11 H 0.058 0.942 12 C 0.021 3.979 13 N -0.940 5.940 14 Si 0.927 3.073 15 H -0.273 1.273 16 H -0.280 1.280 17 H -0.265 1.265 18 N -0.324 5.324 19 N -0.350 5.350 20 C 0.342 3.658 21 N -0.448 5.448 22 C 0.093 3.907 23 C -0.172 4.172 24 C -0.113 4.113 25 C -0.116 4.116 26 C -0.074 4.074 27 C 0.069 3.931 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.124 0.876 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.047 0.953 36 H 0.004 0.996 37 H 0.010 0.990 38 H 0.266 0.734 39 H 0.043 0.957 40 H 0.093 0.907 41 H 0.136 0.864 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.101 0.899 46 H 0.087 0.913 47 H 0.067 0.933 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.616 -4.697 -22.333 28.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.212 4.212 3 C 0.018 3.982 4 N -0.152 5.152 5 C -0.063 4.063 6 C -0.004 4.004 7 H 0.112 0.888 8 C -0.179 4.179 9 C -0.027 4.027 10 C -0.547 4.547 11 H 0.076 0.924 12 C -0.177 4.177 13 N -0.581 5.581 14 Si 0.753 3.247 15 H -0.198 1.198 16 H -0.205 1.205 17 H -0.190 1.190 18 N -0.163 5.163 19 N -0.194 5.194 20 C -0.015 4.015 21 N -0.174 5.174 22 C -0.033 4.033 23 C -0.191 4.191 24 C -0.114 4.114 25 C -0.173 4.173 26 C -0.112 4.112 27 C -0.059 4.059 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.142 0.858 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.022 0.978 37 H 0.029 0.971 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.111 0.889 41 H 0.154 0.846 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.119 0.881 46 H 0.105 0.895 47 H 0.085 0.915 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 17.117 -4.912 -21.411 27.849 hybrid contribution -0.477 -0.382 0.516 0.800 sum 16.640 -5.294 -20.895 27.231 Atomic orbital electron populations 1.24173 0.95414 1.03633 0.95291 1.22909 0.96349 0.97579 1.04398 1.21209 0.91693 0.98070 0.87212 1.46504 1.10308 1.47043 1.11373 1.25274 0.98985 1.00577 0.81426 1.19541 0.86434 0.95998 0.98442 0.88845 1.21615 1.02274 0.93315 1.00734 1.19389 0.95086 0.94520 0.93706 1.21228 1.00995 1.15643 1.16864 0.92371 1.25628 0.95065 0.99389 0.97630 1.69999 1.14707 1.43104 1.30306 0.86005 0.78470 0.80669 0.79552 1.19807 1.20510 1.18999 1.73929 0.98430 1.17655 1.26299 1.74472 1.24303 1.18939 1.01646 1.22587 0.84814 1.01065 0.93032 1.59219 1.28250 1.12119 1.17782 1.21043 0.95635 0.92127 0.94492 1.21983 1.00886 0.96803 0.99394 1.21218 0.97957 0.94679 0.97498 1.20912 0.98315 1.02023 0.96033 1.20579 1.01531 0.96875 0.92177 1.22177 0.93677 0.92140 0.97864 0.86952 0.87083 0.87505 0.87099 0.85774 0.91847 0.91369 0.93382 0.97754 0.97120 0.92507 0.93936 0.88924 0.84612 0.90690 0.91079 0.90979 0.88122 0.89452 0.91454 0.93540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 14.32 67.78 0.97 -2.32 16 2 C -0.19 -4.55 9.85 25.64 0.25 -4.30 16 3 C 0.14 3.15 6.31 85.63 0.54 3.69 16 4 N -0.46 -14.31 2.79 -518.91 -1.45 -15.76 16 5 C 0.21 7.86 6.58 137.64 0.91 8.76 16 6 C 0.02 0.66 2.70 -11.54 -0.03 0.63 16 7 H 0.09 3.33 6.96 -2.39 -0.02 3.31 16 8 C -0.12 -4.47 8.99 71.98 0.65 -3.82 16 9 C 0.01 0.55 3.50 29.85 0.10 0.66 16 10 C -0.51 -28.06 8.96 25.60 0.23 -27.83 16 11 H 0.06 3.36 7.30 -2.91 -0.02 3.34 16 12 C 0.02 1.20 5.47 84.65 0.46 1.66 16 13 N -0.94 -57.37 13.96 21.45 0.30 -57.07 16 14 Si 0.93 45.95 27.47 68.60 1.88 47.83 16 15 H -0.27 -13.34 7.11 99.48 0.71 -12.63 16 16 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 17 H -0.27 -12.99 6.54 99.48 0.65 -12.34 16 18 N -0.32 -13.91 12.18 -49.54 -0.60 -14.51 16 19 N -0.35 -13.70 11.75 -58.00 -0.68 -14.38 16 20 C 0.34 10.89 6.68 260.11 1.74 12.63 16 21 N -0.45 -10.88 4.73 -710.68 -3.36 -14.24 16 22 C 0.09 1.87 5.60 85.41 0.48 2.35 16 23 C -0.17 -2.59 9.50 26.68 0.25 -2.34 16 24 C -0.11 -1.57 5.90 -15.40 -0.09 -1.66 16 25 C -0.12 -1.03 9.91 71.23 0.71 -0.33 16 26 C -0.07 -1.13 6.02 29.75 0.18 -0.95 16 27 C 0.07 1.54 5.17 86.27 0.45 1.99 16 28 H 0.11 2.32 8.06 -2.91 -0.02 2.29 16 29 H 0.11 2.32 7.84 -2.91 -0.02 2.30 16 30 H 0.11 2.64 8.06 -2.91 -0.02 2.61 16 31 H 0.11 2.24 6.91 -2.39 -0.02 2.22 16 32 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.07 2.66 6.95 -2.38 -0.02 2.64 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.00 0.21 7.20 -2.39 -0.02 0.19 16 37 H 0.01 0.54 7.57 -2.39 -0.02 0.52 16 38 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 39 H 0.04 1.00 8.10 -2.39 -0.02 0.98 16 40 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.14 1.50 7.87 -2.91 -0.02 1.47 16 42 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.07 0.54 7.94 -2.39 -0.02 0.52 16 44 H 0.07 0.54 8.08 -2.39 -0.02 0.52 16 45 H 0.10 1.17 8.13 -2.38 -0.02 1.15 16 46 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 47 H 0.07 1.71 8.04 -2.38 -0.02 1.69 16 48 H 0.05 1.15 8.09 -2.39 -0.02 1.13 16 Total: -1.00 -70.84 389.33 4.74 -66.10 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.86 Total: 13.22 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: 7.79 Total: -11.18 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -5.80 Total: -115.97 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.88 Total: 47.83 kcal Total: -70.84 4.74 -66.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355900792.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.696 kcal (2) G-P(sol) polarization free energy of solvation -70.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds