Wall clock time and date at job start Tue Mar 31 2020 11:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 120.00282 * 2 1 4 4 N 1.46497 * 109.47349 * 124.99735 * 3 2 1 5 5 C 1.36737 * 127.14038 * 275.23452 * 4 3 2 6 6 C 1.50705 * 126.34518 * 359.97438 * 5 4 3 7 7 H 1.08999 * 109.63815 * 359.57633 * 6 5 4 8 8 C 1.53021 * 109.64008 * 120.00127 * 6 5 4 9 9 C 1.50071 * 110.14382 * 169.12456 * 8 6 5 10 10 C 1.29437 * 124.07603 * 342.85893 * 9 8 6 11 11 C 1.50073 * 124.07486 * 0.45606 * 10 9 8 12 12 C 1.53004 * 110.15747 * 342.90193 * 11 10 9 13 13 N 1.30297 * 107.30684 * 180.02562 * 5 4 3 14 14 N 1.28522 * 110.05180 * 359.72704 * 13 5 4 15 15 C 1.31213 * 109.86474 * 0.45368 * 14 13 5 16 16 N 1.38582 * 126.47913 * 179.82394 * 15 14 13 17 17 C 1.46897 * 110.99526 * 290.38650 * 16 15 14 18 18 C 1.46895 * 110.99958 * 54.33797 * 16 15 14 19 19 H 1.09003 * 109.47360 * 300.00532 * 18 16 15 20 20 C 1.53002 * 109.47016 * 60.00332 * 18 16 15 21 21 C 1.50695 * 109.47427 * 180.02562 * 18 16 15 22 22 H 1.08001 * 119.99605 * 0.02562 * 21 18 16 23 23 C 1.37874 * 120.00413 * 179.97438 * 21 18 16 24 24 N 1.31517 * 119.99850 * 0.02562 * 23 21 18 25 25 Si 1.86800 * 120.00216 * 179.97438 * 23 21 18 26 26 H 1.48503 * 109.47007 * 60.00151 * 25 23 21 27 27 H 1.48497 * 109.47332 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47187 * 300.00255 * 25 23 21 29 29 H 1.07997 * 120.00378 * 180.02562 * 1 2 3 30 30 H 1.08004 * 119.99588 * 359.97438 * 1 2 3 31 31 H 1.07999 * 119.99838 * 179.97438 * 2 1 3 32 32 H 1.08996 * 109.47064 * 4.99961 * 3 2 1 33 33 H 1.09008 * 109.46719 * 244.99783 * 3 2 1 34 34 H 1.09007 * 109.35598 * 289.32576 * 8 6 5 35 35 H 1.08994 * 109.36044 * 49.05139 * 8 6 5 36 36 H 1.07994 * 117.96287 * 162.89243 * 9 8 6 37 37 H 1.07995 * 117.96870 * 180.47477 * 10 9 8 38 38 H 1.09001 * 109.35983 * 103.09298 * 11 10 9 39 39 H 1.09007 * 109.35650 * 222.68102 * 11 10 9 40 40 H 1.09004 * 109.62288 * 289.72948 * 12 11 10 41 41 H 1.08989 * 109.65217 * 169.09948 * 12 11 10 42 42 H 1.08997 * 109.47198 * 189.92313 * 17 16 15 43 43 H 1.08999 * 109.47830 * 309.92465 * 17 16 15 44 44 H 1.09008 * 109.47268 * 69.92570 * 17 16 15 45 45 H 1.08992 * 109.47251 * 60.00173 * 20 18 16 46 46 H 1.09005 * 109.46911 * 180.02562 * 20 18 16 47 47 H 1.09000 * 109.47334 * 299.99653 * 20 18 16 48 48 H 0.97002 * 120.00042 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.7175 1.7009 2.4188 6 6 1.3846 2.1628 2.9490 7 1 0.6518 2.1697 2.1421 8 6 0.9180 1.2192 4.0597 9 6 -0.2644 1.8061 4.7736 10 6 -0.6048 3.0532 4.7090 11 6 0.1295 4.0846 3.9033 12 6 1.5240 3.5727 3.5369 13 7 3.8206 1.5803 3.1017 14 7 4.7662 1.1580 2.3407 15 6 4.3159 0.9943 1.1191 16 7 5.0439 0.5556 0.0246 17 6 6.0234 1.5666 -0.3955 18 6 5.7004 -0.7273 0.3089 19 1 6.3778 -0.6093 1.1547 20 6 4.6412 -1.7784 0.6467 21 6 6.4811 -1.1712 -0.9012 22 1 6.4892 -0.5610 -1.7923 23 6 7.1860 -2.3557 -0.8705 24 7 7.1767 -3.0985 0.2147 25 14 8.1532 -2.9063 -2.3708 26 1 9.1808 -1.8857 -2.6992 27 1 8.8170 -4.2031 -2.0834 28 1 7.2302 -3.0678 -3.5229 29 1 -0.5400 -0.9352 0.0004 30 1 -0.5400 0.9354 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3587 2.1316 0.0896 33 1 2.6214 1.4024 -0.9315 34 1 0.6377 0.2598 3.6247 35 1 1.7297 1.0698 4.7715 36 1 -0.8684 1.1470 5.3794 37 1 -1.4710 3.3715 5.2700 38 1 -0.4288 4.2953 2.9911 39 1 0.2225 5.0003 4.4873 40 1 2.1473 3.5371 4.4304 41 1 1.9751 4.2348 2.7979 42 1 6.4559 1.2775 -1.3533 43 1 5.5282 2.5322 -0.4972 44 1 6.8131 1.6402 0.3523 45 1 3.9638 -1.8965 -0.1990 46 1 5.1284 -2.7303 0.8581 47 1 4.0768 -1.4573 1.5222 48 1 7.6723 -3.9321 0.2362 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356124133.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:41 Heat of formation + Delta-G solvation = 118.648054 kcal Electronic energy + Delta-G solvation = -27590.721730 eV Core-core repulsion = 24068.958389 eV Total energy + Delta-G solvation = -3521.763341 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.52936 -38.62541 -36.94231 -35.96621 -33.00410 -32.61877 -31.92830 -30.91689 -29.36083 -28.30521 -26.68576 -25.45959 -24.33763 -23.74149 -22.96669 -21.73548 -20.61679 -19.80854 -19.37093 -17.78694 -16.94954 -16.46048 -16.07980 -15.88461 -15.37844 -14.77139 -14.61886 -14.53878 -14.00015 -13.79669 -13.56134 -13.42642 -13.13796 -12.97349 -12.62210 -12.41189 -12.34320 -12.19966 -11.83284 -11.56886 -11.21614 -11.11247 -11.01485 -10.94056 -10.81260 -10.79412 -10.47341 -10.30539 -10.26814 -10.09639 -9.99143 -9.73172 -9.56859 -9.12803 -9.09138 -8.51639 -8.37439 -7.69382 -6.07065 -4.13917 1.93474 2.13769 2.26053 2.88759 3.28781 3.33858 3.35013 3.38171 4.31444 4.34969 4.60301 4.63381 4.65440 4.76157 4.77361 4.87403 5.13051 5.17910 5.22063 5.25025 5.29784 5.36481 5.46633 5.54595 5.69470 5.75195 5.78763 5.83173 5.93538 5.95343 6.03885 6.09414 6.31595 6.33082 6.44147 6.50096 6.50410 6.59131 6.60424 6.76810 6.79858 6.92237 6.96605 7.17670 7.40079 7.66375 7.74915 7.92722 8.18760 8.46671 8.89391 9.30355 9.50929 10.99742 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.022233 B = 0.003504 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.088286 B = 7988.339004 C = 8240.198917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.163 4.163 3 C 0.143 3.857 4 N -0.467 5.467 5 C 0.163 3.837 6 C 0.013 3.987 7 H 0.082 0.918 8 C -0.082 4.082 9 C -0.145 4.145 10 C -0.163 4.163 11 C -0.089 4.089 12 C -0.108 4.108 13 N -0.286 5.286 14 N -0.318 5.318 15 C 0.382 3.618 16 N -0.473 5.473 17 C 0.052 3.948 18 C 0.227 3.773 19 H 0.022 0.978 20 C -0.128 4.128 21 C -0.513 4.513 22 H 0.065 0.935 23 C 0.063 3.937 24 N -0.888 5.888 25 Si 0.901 3.099 26 H -0.276 1.276 27 H -0.287 1.287 28 H -0.277 1.277 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.122 0.878 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.087 0.913 43 H 0.041 0.959 44 H 0.036 0.964 45 H 0.030 0.970 46 H 0.091 0.909 47 H 0.002 0.998 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.957 11.463 2.730 20.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.182 4.182 3 C 0.020 3.980 4 N -0.160 5.160 5 C -0.104 4.104 6 C -0.008 4.008 7 H 0.101 0.899 8 C -0.120 4.120 9 C -0.163 4.163 10 C -0.181 4.181 11 C -0.126 4.126 12 C -0.146 4.146 13 N -0.126 5.126 14 N -0.161 5.161 15 C 0.026 3.974 16 N -0.200 5.200 17 C -0.096 4.096 18 C 0.123 3.877 19 H 0.040 0.960 20 C -0.187 4.187 21 C -0.551 4.551 22 H 0.083 0.917 23 C -0.139 4.139 24 N -0.526 5.526 25 Si 0.728 3.272 26 H -0.202 1.202 27 H -0.213 1.213 28 H -0.202 1.202 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.140 0.860 32 H 0.106 0.894 33 H 0.129 0.871 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.105 0.895 43 H 0.060 0.940 44 H 0.054 0.946 45 H 0.050 0.950 46 H 0.109 0.891 47 H 0.021 0.979 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.200 11.225 3.563 20.028 hybrid contribution 0.061 -0.530 -1.356 1.457 sum -16.139 10.694 2.207 19.486 Atomic orbital electron populations 1.23841 0.95414 1.02090 1.00154 1.23245 0.96099 0.98848 0.99983 1.20830 0.91608 0.96394 0.89208 1.46376 1.09593 1.50518 1.09539 1.24432 0.98810 1.05623 0.81538 1.19465 0.88217 0.95693 0.97441 0.89939 1.20470 0.96850 0.97928 0.96750 1.22043 0.97928 0.96310 1.00020 1.22013 1.00450 0.94865 1.00793 1.20454 0.95128 0.97607 0.99392 1.21610 0.96970 0.94259 1.01760 1.73901 0.96287 1.16383 1.26061 1.74716 1.22687 1.18860 0.99848 1.22844 0.83248 0.98591 0.92696 1.59266 1.27672 1.06188 1.26911 1.22178 0.93495 0.91938 1.01945 1.19391 0.90965 0.80351 0.96988 0.96018 1.21798 0.97742 1.02802 0.96318 1.21016 1.29006 1.06183 0.98912 0.91668 1.24909 0.96452 0.96308 0.96261 1.69895 1.41763 1.13744 1.27177 0.86523 0.80044 0.77892 0.82722 1.20173 1.21280 1.20219 0.87858 0.88533 0.86032 0.89423 0.87065 0.90862 0.89272 0.87742 0.88025 0.91040 0.90783 0.90303 0.91620 0.89462 0.93995 0.94559 0.95045 0.89090 0.97870 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 14.32 29.01 0.42 -1.34 16 2 C -0.16 -2.09 9.85 -36.03 -0.35 -2.45 16 3 C 0.14 1.87 6.23 -5.20 -0.03 1.83 16 4 N -0.47 -7.92 2.79 -115.36 -0.32 -8.24 16 5 C 0.16 2.70 6.58 -154.01 -1.01 1.68 16 6 C 0.01 0.16 2.62 -91.55 -0.24 -0.08 16 7 H 0.08 0.87 7.07 -51.93 -0.37 0.50 16 8 C -0.08 -0.96 5.42 -28.18 -0.15 -1.12 16 9 C -0.14 -1.38 9.80 -35.90 -0.35 -1.74 16 10 C -0.16 -1.41 9.80 -35.90 -0.35 -1.76 16 11 C -0.09 -0.73 6.12 -28.18 -0.17 -0.91 16 12 C -0.11 -1.16 5.29 -26.52 -0.14 -1.30 16 13 N -0.29 -5.80 12.13 32.99 0.40 -5.40 16 14 N -0.32 -7.28 12.01 30.32 0.36 -6.92 16 15 C 0.38 7.97 5.05 -318.87 -1.61 6.36 16 16 N -0.47 -10.30 4.63 -176.08 -0.81 -11.11 16 17 C 0.05 1.03 9.10 60.06 0.55 1.58 16 18 C 0.23 5.81 1.95 -68.87 -0.13 5.67 16 19 H 0.02 0.65 8.02 -51.93 -0.42 0.23 16 20 C -0.13 -3.22 8.84 37.16 0.33 -2.89 16 21 C -0.51 -13.63 7.99 -34.44 -0.28 -13.90 16 22 H 0.07 1.68 6.41 -52.49 -0.34 1.34 16 23 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 24 N -0.89 -25.20 11.32 55.43 0.63 -24.57 16 25 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 H 0.10 0.94 8.06 -52.49 -0.42 0.52 16 30 H 0.10 0.77 7.84 -52.48 -0.41 0.36 16 31 H 0.12 1.90 7.80 -52.49 -0.41 1.49 16 32 H 0.09 0.88 7.12 -51.93 -0.37 0.51 16 33 H 0.11 1.50 8.11 -51.92 -0.42 1.08 16 34 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 35 H 0.09 1.20 8.05 -51.93 -0.42 0.78 16 36 H 0.10 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.10 0.73 8.06 -52.49 -0.42 0.30 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 40 H 0.08 0.95 8.12 -51.93 -0.42 0.53 16 41 H 0.07 0.71 8.14 -51.94 -0.42 0.28 16 42 H 0.09 1.69 6.47 -51.93 -0.34 1.35 16 43 H 0.04 0.72 8.06 -51.93 -0.42 0.30 16 44 H 0.04 0.76 8.12 -51.92 -0.42 0.34 16 45 H 0.03 0.74 7.88 -51.93 -0.41 0.33 16 46 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 47 H 0.00 0.06 7.22 -51.93 -0.38 -0.32 16 48 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 385.41 15.07 5.81 5.81 Total: -1.00 -30.88 385.41 -10.53 -41.41 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -7.94 Total: 1.97 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -3.63 Total: -8.74 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 0.25 Total: -56.25 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.88 -10.53 -41.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356124133.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.057 kcal (2) G-P(sol) polarization free energy of solvation -30.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds