Wall clock time and date at job start Tue Mar 31 2020 11:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 120.00282 * 2 1 4 4 N 1.46497 * 109.47349 * 124.99735 * 3 2 1 5 5 C 1.36737 * 127.14038 * 275.23452 * 4 3 2 6 6 C 1.50705 * 126.34518 * 359.97438 * 5 4 3 7 7 H 1.08999 * 109.63815 * 359.57633 * 6 5 4 8 8 C 1.53021 * 109.64008 * 120.00127 * 6 5 4 9 9 C 1.50071 * 110.14382 * 169.12456 * 8 6 5 10 10 C 1.29437 * 124.07603 * 342.85893 * 9 8 6 11 11 C 1.50073 * 124.07486 * 0.45606 * 10 9 8 12 12 C 1.53004 * 110.15747 * 342.90193 * 11 10 9 13 13 N 1.30297 * 107.30684 * 180.02562 * 5 4 3 14 14 N 1.28522 * 110.05180 * 359.72704 * 13 5 4 15 15 C 1.31213 * 109.86474 * 0.45368 * 14 13 5 16 16 N 1.38582 * 126.47913 * 179.82394 * 15 14 13 17 17 C 1.46897 * 110.99526 * 290.38650 * 16 15 14 18 18 C 1.46895 * 110.99958 * 54.33797 * 16 15 14 19 19 H 1.09003 * 109.47360 * 300.00532 * 18 16 15 20 20 C 1.53002 * 109.47016 * 60.00332 * 18 16 15 21 21 C 1.50695 * 109.47427 * 180.02562 * 18 16 15 22 22 H 1.08001 * 119.99605 * 0.02562 * 21 18 16 23 23 C 1.37874 * 120.00413 * 179.97438 * 21 18 16 24 24 N 1.31517 * 119.99850 * 0.02562 * 23 21 18 25 25 Si 1.86800 * 120.00216 * 179.97438 * 23 21 18 26 26 H 1.48503 * 109.47007 * 60.00151 * 25 23 21 27 27 H 1.48497 * 109.47332 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47187 * 300.00255 * 25 23 21 29 29 H 1.07997 * 120.00378 * 180.02562 * 1 2 3 30 30 H 1.08004 * 119.99588 * 359.97438 * 1 2 3 31 31 H 1.07999 * 119.99838 * 179.97438 * 2 1 3 32 32 H 1.08996 * 109.47064 * 4.99961 * 3 2 1 33 33 H 1.09008 * 109.46719 * 244.99783 * 3 2 1 34 34 H 1.09007 * 109.35598 * 289.32576 * 8 6 5 35 35 H 1.08994 * 109.36044 * 49.05139 * 8 6 5 36 36 H 1.07994 * 117.96287 * 162.89243 * 9 8 6 37 37 H 1.07995 * 117.96870 * 180.47477 * 10 9 8 38 38 H 1.09001 * 109.35983 * 103.09298 * 11 10 9 39 39 H 1.09007 * 109.35650 * 222.68102 * 11 10 9 40 40 H 1.09004 * 109.62288 * 289.72948 * 12 11 10 41 41 H 1.08989 * 109.65217 * 169.09948 * 12 11 10 42 42 H 1.08997 * 109.47198 * 189.92313 * 17 16 15 43 43 H 1.08999 * 109.47830 * 309.92465 * 17 16 15 44 44 H 1.09008 * 109.47268 * 69.92570 * 17 16 15 45 45 H 1.08992 * 109.47251 * 60.00173 * 20 18 16 46 46 H 1.09005 * 109.46911 * 180.02562 * 20 18 16 47 47 H 1.09000 * 109.47334 * 299.99653 * 20 18 16 48 48 H 0.97002 * 120.00042 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.7175 1.7009 2.4188 6 6 1.3846 2.1628 2.9490 7 1 0.6518 2.1697 2.1421 8 6 0.9180 1.2192 4.0597 9 6 -0.2644 1.8061 4.7736 10 6 -0.6048 3.0532 4.7090 11 6 0.1295 4.0846 3.9033 12 6 1.5240 3.5727 3.5369 13 7 3.8206 1.5803 3.1017 14 7 4.7662 1.1580 2.3407 15 6 4.3159 0.9943 1.1191 16 7 5.0439 0.5556 0.0246 17 6 6.0234 1.5666 -0.3955 18 6 5.7004 -0.7273 0.3089 19 1 6.3778 -0.6093 1.1547 20 6 4.6412 -1.7784 0.6467 21 6 6.4811 -1.1712 -0.9012 22 1 6.4892 -0.5610 -1.7923 23 6 7.1860 -2.3557 -0.8705 24 7 7.1767 -3.0985 0.2147 25 14 8.1532 -2.9063 -2.3708 26 1 9.1808 -1.8857 -2.6992 27 1 8.8170 -4.2031 -2.0834 28 1 7.2302 -3.0678 -3.5229 29 1 -0.5400 -0.9352 0.0004 30 1 -0.5400 0.9354 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3587 2.1316 0.0896 33 1 2.6214 1.4024 -0.9315 34 1 0.6377 0.2598 3.6247 35 1 1.7297 1.0698 4.7715 36 1 -0.8684 1.1470 5.3794 37 1 -1.4710 3.3715 5.2700 38 1 -0.4288 4.2953 2.9911 39 1 0.2225 5.0003 4.4873 40 1 2.1473 3.5371 4.4304 41 1 1.9751 4.2348 2.7979 42 1 6.4559 1.2775 -1.3533 43 1 5.5282 2.5322 -0.4972 44 1 6.8131 1.6402 0.3523 45 1 3.9638 -1.8965 -0.1990 46 1 5.1284 -2.7303 0.8581 47 1 4.0768 -1.4573 1.5222 48 1 7.6723 -3.9321 0.2362 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356124133.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:40 Heat of formation + Delta-G solvation = 102.760177 kcal Electronic energy + Delta-G solvation = -27591.410680 eV Core-core repulsion = 24068.958389 eV Total energy + Delta-G solvation = -3522.452291 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.99498 -39.55351 -38.66386 -37.11059 -34.95568 -33.74484 -33.05105 -31.69932 -31.34027 -29.72672 -27.85628 -27.35478 -26.10887 -24.78178 -23.88746 -23.42771 -21.85193 -21.02556 -20.77235 -18.67840 -18.49147 -18.02766 -17.51204 -17.06268 -16.86882 -16.42517 -15.84121 -15.67717 -15.48290 -15.02509 -14.79436 -14.54968 -14.27670 -14.19898 -14.01169 -13.64730 -13.49783 -13.21720 -13.13642 -13.07914 -12.89994 -12.71380 -12.60162 -12.46900 -12.22457 -12.18973 -12.08893 -11.95774 -11.69195 -11.48037 -11.26018 -11.11113 -11.01191 -10.58793 -10.50751 -9.93004 -9.82195 -9.52452 -8.15529 -6.30423 0.72942 1.02234 1.44216 1.46729 1.46912 1.54125 1.66061 1.85002 2.41038 3.01391 3.16141 3.28282 3.63812 3.75837 3.79773 3.85744 4.00449 4.16255 4.26070 4.29405 4.37413 4.42386 4.48095 4.54973 4.58475 4.61044 4.69565 4.71285 4.79344 4.84533 4.90429 4.95771 5.00562 5.02404 5.05128 5.10400 5.11922 5.26978 5.35551 5.41222 5.54330 5.57623 5.63300 5.68977 5.81025 5.90110 5.97566 6.10302 6.12941 6.62325 6.80149 7.38915 7.79548 8.91542 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.022233 B = 0.003504 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.088286 B = 7988.339004 C = 8240.198917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.201 4.201 3 C 0.138 3.862 4 N -0.460 5.460 5 C 0.188 3.812 6 C 0.015 3.985 7 H 0.111 0.889 8 C -0.079 4.079 9 C -0.161 4.161 10 C -0.150 4.150 11 C -0.085 4.085 12 C -0.105 4.105 13 N -0.326 5.326 14 N -0.364 5.364 15 C 0.362 3.638 16 N -0.465 5.465 17 C 0.055 3.945 18 C 0.239 3.761 19 H -0.030 1.030 20 C -0.105 4.105 21 C -0.524 4.524 22 H 0.075 0.925 23 C 0.012 3.988 24 N -0.922 5.922 25 Si 0.970 3.030 26 H -0.268 1.268 27 H -0.288 1.288 28 H -0.266 1.266 29 H 0.112 0.888 30 H 0.131 0.869 31 H 0.082 0.918 32 H 0.130 0.870 33 H 0.105 0.895 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.116 0.884 37 H 0.124 0.876 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.013 0.987 45 H 0.038 0.962 46 H 0.064 0.936 47 H -0.004 1.004 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.342 13.401 1.183 24.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.220 4.220 3 C 0.018 3.982 4 N -0.153 5.153 5 C -0.081 4.081 6 C -0.006 4.006 7 H 0.129 0.871 8 C -0.117 4.117 9 C -0.179 4.179 10 C -0.168 4.168 11 C -0.122 4.122 12 C -0.144 4.144 13 N -0.165 5.165 14 N -0.207 5.207 15 C 0.005 3.995 16 N -0.191 5.191 17 C -0.092 4.092 18 C 0.133 3.867 19 H -0.012 1.012 20 C -0.164 4.164 21 C -0.562 4.562 22 H 0.093 0.907 23 C -0.187 4.187 24 N -0.561 5.561 25 Si 0.795 3.205 26 H -0.193 1.193 27 H -0.213 1.213 28 H -0.190 1.190 29 H 0.130 0.870 30 H 0.149 0.851 31 H 0.101 0.899 32 H 0.148 0.852 33 H 0.123 0.877 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.134 0.866 37 H 0.142 0.858 38 H 0.112 0.888 39 H 0.107 0.893 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.109 0.891 43 H 0.089 0.911 44 H 0.032 0.968 45 H 0.057 0.943 46 H 0.083 0.917 47 H 0.015 0.985 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.614 13.188 2.003 23.720 hybrid contribution 0.974 -1.074 -0.793 1.653 sum -18.639 12.113 1.210 22.263 Atomic orbital electron populations 1.24148 0.94095 1.04122 0.95033 1.22948 0.97105 0.97176 1.04731 1.21185 0.91499 0.98104 0.87455 1.46591 1.08601 1.49320 1.10742 1.25358 0.99401 1.02397 0.80912 1.19778 0.86044 0.96477 0.98324 0.87084 1.20369 0.97123 0.97967 0.96203 1.21957 0.97591 0.97198 1.01150 1.22267 1.00539 0.94226 0.99773 1.20502 0.93210 0.97861 1.00645 1.21588 0.98724 0.93286 1.00777 1.73812 0.97377 1.18525 1.26793 1.74588 1.24802 1.20176 1.01162 1.22714 0.84773 1.00042 0.92015 1.59183 1.27472 1.05331 1.27130 1.22200 0.92977 0.92891 1.01143 1.19031 0.90291 0.82432 0.94970 1.01230 1.21512 0.97281 1.01398 0.96165 1.21314 1.29187 1.06471 0.99262 0.90737 1.25807 0.97385 0.96340 0.99157 1.70058 1.42611 1.14098 1.29355 0.85424 0.78693 0.77310 0.79099 1.19281 1.21332 1.19036 0.86970 0.85132 0.89926 0.85176 0.87706 0.91453 0.92178 0.86599 0.85767 0.88756 0.89257 0.92457 0.91498 0.89060 0.91057 0.96784 0.94273 0.91683 0.98544 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 14.32 67.78 0.97 -1.23 16 2 C -0.20 -4.86 9.85 25.65 0.25 -4.61 16 3 C 0.14 3.35 6.23 85.63 0.53 3.89 16 4 N -0.46 -15.55 2.79 -518.90 -1.45 -16.99 16 5 C 0.19 6.20 6.58 137.64 0.91 7.10 16 6 C 0.01 0.32 2.62 -11.40 -0.03 0.29 16 7 H 0.11 1.85 7.07 -2.39 -0.02 1.84 16 8 C -0.08 -1.77 5.42 29.66 0.16 -1.61 16 9 C -0.16 -2.67 9.80 27.04 0.27 -2.41 16 10 C -0.15 -2.00 9.80 27.05 0.27 -1.73 16 11 C -0.09 -1.06 6.12 29.65 0.18 -0.87 16 12 C -0.11 -2.03 5.29 30.73 0.16 -1.87 16 13 N -0.33 -13.82 12.13 -49.53 -0.60 -14.42 16 14 N -0.36 -17.67 12.01 -58.00 -0.70 -18.36 16 15 C 0.36 15.68 5.05 260.11 1.31 17.00 16 16 N -0.46 -20.96 4.63 -711.01 -3.29 -24.25 16 17 C 0.06 2.24 9.10 127.69 1.16 3.40 16 18 C 0.24 12.85 1.95 44.17 0.09 12.93 16 19 H -0.03 -1.90 8.02 -2.39 -0.02 -1.92 16 20 C -0.11 -5.58 8.84 71.98 0.64 -4.94 16 21 C -0.52 -28.59 7.99 25.60 0.20 -28.39 16 22 H 0.07 3.85 6.41 -2.91 -0.02 3.83 16 23 C 0.01 0.68 5.30 84.65 0.45 1.13 16 24 N -0.92 -54.38 11.32 21.45 0.24 -54.14 16 25 Si 0.97 43.05 29.54 68.60 2.03 45.08 16 26 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 27 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 28 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 29 H 0.11 1.65 8.06 -2.91 -0.02 1.62 16 30 H 0.13 1.27 7.84 -2.91 -0.02 1.24 16 31 H 0.08 2.66 7.80 -2.91 -0.02 2.64 16 32 H 0.13 2.01 7.12 -2.39 -0.02 1.99 16 33 H 0.10 2.67 8.11 -2.38 -0.02 2.65 16 34 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.06 1.69 8.05 -2.39 -0.02 1.67 16 36 H 0.12 1.65 8.06 -2.91 -0.02 1.63 16 37 H 0.12 1.18 8.06 -2.91 -0.02 1.15 16 38 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.06 1.36 8.12 -2.38 -0.02 1.34 16 41 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.09 3.56 6.47 -2.39 -0.02 3.54 16 43 H 0.07 2.42 8.06 -2.39 -0.02 2.40 16 44 H 0.01 0.60 8.12 -2.38 -0.02 0.58 16 45 H 0.04 1.95 7.88 -2.39 -0.02 1.93 16 46 H 0.06 3.78 6.07 -2.38 -0.01 3.76 16 47 H 0.00 -0.24 7.22 -2.39 -0.02 -0.26 16 48 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -72.85 385.41 4.68 -68.17 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.92 Total: 16.83 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: 7.52 Total: -1.92 kcal Atomic # 7 Polarization: -122.37 SS G_CDS: -5.79 Total: -128.16 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -72.85 4.68 -68.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356124133.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.935 kcal (2) G-P(sol) polarization free energy of solvation -72.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds