Wall clock time and date at job start Tue Mar 31 2020 11:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50697 * 119.99966 * 2 1 4 4 N 1.46501 * 109.47227 * 127.02169 * 3 2 1 5 5 C 1.36741 * 127.13444 * 86.44656 * 4 3 2 6 6 C 1.50704 * 126.34595 * 0.02562 * 5 4 3 7 7 H 1.09005 * 109.81510 * 0.52758 * 6 5 4 8 8 C 1.53024 * 109.64240 * 239.99821 * 6 5 4 9 9 C 1.50067 * 110.14487 * 190.88149 * 8 6 5 10 10 C 1.29445 * 124.07889 * 17.39159 * 9 8 6 11 11 C 1.50067 * 124.06830 * 359.01366 * 10 9 8 12 12 C 1.53022 * 110.09726 * 17.58504 * 11 10 9 13 13 N 1.30292 * 107.30774 * 180.26664 * 5 4 3 14 14 N 1.28529 * 110.04914 * 359.56146 * 13 5 4 15 15 C 1.31215 * 109.86320 * 0.44953 * 14 13 5 16 16 N 1.38581 * 126.47570 * 179.72642 * 15 14 13 17 17 C 1.46900 * 111.00362 * 293.03843 * 16 15 14 18 18 C 1.46901 * 110.99776 * 56.99504 * 16 15 14 19 19 H 1.09009 * 109.46593 * 299.99971 * 18 16 15 20 20 C 1.52998 * 109.47335 * 59.99369 * 18 16 15 21 21 C 1.50692 * 109.47311 * 180.02562 * 18 16 15 22 22 H 1.08001 * 120.00025 * 359.97438 * 21 18 16 23 23 C 1.37881 * 120.00317 * 179.97438 * 21 18 16 24 24 N 1.31517 * 119.99527 * 359.97438 * 23 21 18 25 25 Si 1.86802 * 120.00241 * 179.97438 * 23 21 18 26 26 H 1.48497 * 109.46977 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46861 * 119.99627 * 25 23 21 28 28 H 1.48499 * 109.47247 * 239.99812 * 25 23 21 29 29 H 1.08003 * 120.00085 * 180.02562 * 1 2 3 30 30 H 1.08001 * 120.00014 * 359.97438 * 1 2 3 31 31 H 1.07995 * 119.99866 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.47108 * 7.02881 * 3 2 1 33 33 H 1.08995 * 109.47245 * 247.02551 * 3 2 1 34 34 H 1.09000 * 109.35745 * 70.67569 * 8 6 5 35 35 H 1.08998 * 109.24739 * 311.01982 * 8 6 5 36 36 H 1.08009 * 117.96071 * 197.10690 * 9 8 6 37 37 H 1.07994 * 117.96138 * 179.24623 * 10 9 8 38 38 H 1.09003 * 109.54241 * 257.29453 * 11 10 9 39 39 H 1.09001 * 109.11679 * 137.60838 * 11 10 9 40 40 H 1.09003 * 109.64651 * 190.69107 * 12 11 10 41 41 H 1.08996 * 109.64370 * 70.05343 * 12 11 10 42 42 H 1.08993 * 109.46777 * 67.72072 * 17 16 15 43 43 H 1.08994 * 109.47154 * 187.72520 * 17 16 15 44 44 H 1.09001 * 109.46633 * 307.72561 * 17 16 15 45 45 H 1.09003 * 109.46873 * 180.02562 * 20 18 16 46 46 H 1.08994 * 109.47541 * 300.00384 * 20 18 16 47 47 H 1.08995 * 109.46925 * 60.00689 * 20 18 16 48 48 H 0.97005 * 119.99377 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0280 1.3122 1.1028 5 6 4.3036 0.8199 1.0870 6 6 4.9921 0.1605 -0.0802 7 1 4.3212 0.1355 -0.9389 8 6 5.3953 -1.2660 0.2994 9 6 6.3071 -1.8406 -0.7449 10 6 6.9425 -1.1320 -1.6222 11 6 6.8397 0.3612 -1.7311 12 6 6.2610 0.9439 -0.4399 13 7 4.8116 1.0219 2.2697 14 7 3.9536 1.6120 3.0229 15 6 2.8397 1.8113 2.3587 16 7 1.6892 2.4146 2.8415 17 6 1.0605 1.5914 3.8831 18 6 1.9733 3.7671 3.3393 19 1 2.7038 3.7112 4.1465 20 6 2.5351 4.6219 2.2015 21 6 0.7018 4.3898 3.8554 22 1 -0.2248 3.8363 3.8171 23 6 0.7213 5.6661 4.3767 24 7 1.8498 6.3399 4.4238 25 14 -0.8550 6.4383 5.0158 26 1 -1.9776 5.4802 4.8512 27 1 -0.6954 6.7706 6.4544 28 1 -1.1449 7.6775 4.2507 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3619 2.1297 0.1258 33 1 2.5926 1.4192 -0.9461 34 1 4.5016 -1.8850 0.3789 35 1 5.9105 -1.2503 1.2598 36 1 6.4451 -2.9116 -0.7628 37 1 7.5837 -1.6479 -2.3216 38 1 6.1913 0.6220 -2.5676 39 1 7.8333 0.7760 -1.9011 40 1 6.0125 1.9944 -0.5910 41 1 6.9906 0.8488 0.3643 42 1 1.7007 1.5701 4.7650 43 1 0.0923 2.0167 4.1471 44 1 0.9221 0.5767 3.5100 45 1 2.7463 5.6253 2.5710 46 1 3.4549 4.1714 1.8285 47 1 1.8047 4.6778 1.3944 48 1 1.8636 7.2378 4.7908 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356124138.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:46 Heat of formation + Delta-G solvation = 118.520333 kcal Electronic energy + Delta-G solvation = -27503.367954 eV Core-core repulsion = 23981.599074 eV Total energy + Delta-G solvation = -3521.768880 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.51398 -38.62788 -36.92777 -35.94038 -32.99202 -32.66226 -31.89848 -30.91618 -29.37085 -28.28372 -26.67531 -25.46236 -24.32292 -23.76295 -22.97392 -21.64563 -20.71128 -19.69688 -19.43827 -17.79264 -16.93312 -16.45311 -16.11780 -15.91000 -15.27844 -14.97650 -14.63490 -14.46460 -13.90177 -13.71625 -13.66718 -13.29886 -13.18816 -12.94303 -12.58787 -12.41241 -12.38365 -12.27506 -11.84332 -11.52863 -11.16981 -11.12631 -11.03928 -10.94576 -10.81729 -10.76458 -10.46058 -10.32424 -10.26166 -10.10303 -9.96635 -9.71532 -9.60094 -9.14217 -9.06969 -8.52491 -8.35469 -7.68728 -6.07617 -4.14117 1.94476 2.12131 2.26326 2.88222 3.26355 3.34278 3.36927 3.39294 4.31350 4.34820 4.57770 4.63953 4.69520 4.74562 4.88361 4.90266 5.06620 5.12998 5.17052 5.24815 5.27595 5.38166 5.51921 5.59463 5.72381 5.73606 5.77517 5.82081 5.89329 5.97378 6.07089 6.12291 6.33608 6.36298 6.42803 6.43490 6.49626 6.61859 6.62460 6.75722 6.77841 6.91446 6.96300 7.18414 7.40798 7.66713 7.75715 7.92776 8.18704 8.47469 8.89904 9.31274 9.50806 10.99364 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.019975 B = 0.003588 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.433270 B = 7801.173009 C = 8407.906795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.181 4.181 3 C 0.141 3.859 4 N -0.466 5.466 5 C 0.160 3.840 6 C 0.011 3.989 7 H 0.083 0.917 8 C -0.080 4.080 9 C -0.149 4.149 10 C -0.159 4.159 11 C -0.090 4.090 12 C -0.109 4.109 13 N -0.286 5.286 14 N -0.320 5.320 15 C 0.385 3.615 16 N -0.472 5.472 17 C 0.054 3.946 18 C 0.225 3.775 19 H 0.022 0.978 20 C -0.129 4.129 21 C -0.510 4.510 22 H 0.066 0.934 23 C 0.062 3.938 24 N -0.887 5.887 25 Si 0.900 3.100 26 H -0.272 1.272 27 H -0.284 1.284 28 H -0.284 1.284 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.034 0.966 43 H 0.087 0.913 44 H 0.042 0.958 45 H 0.091 0.909 46 H 0.002 0.998 47 H 0.030 0.970 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.475 -14.317 -14.137 20.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.199 4.199 3 C 0.018 3.982 4 N -0.159 5.159 5 C -0.107 4.107 6 C -0.010 4.010 7 H 0.101 0.899 8 C -0.118 4.118 9 C -0.167 4.167 10 C -0.177 4.177 11 C -0.127 4.127 12 C -0.147 4.147 13 N -0.126 5.126 14 N -0.163 5.163 15 C 0.029 3.971 16 N -0.199 5.199 17 C -0.094 4.094 18 C 0.121 3.879 19 H 0.039 0.961 20 C -0.188 4.188 21 C -0.549 4.549 22 H 0.085 0.915 23 C -0.140 4.140 24 N -0.526 5.526 25 Si 0.728 3.272 26 H -0.197 1.197 27 H -0.210 1.210 28 H -0.210 1.210 29 H 0.119 0.881 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.053 0.947 43 H 0.106 0.894 44 H 0.060 0.940 45 H 0.110 0.890 46 H 0.021 0.979 47 H 0.049 0.951 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.193 -14.055 -13.301 19.800 hybrid contribution -1.271 0.405 -0.165 1.344 sum 2.922 -13.650 -13.466 19.396 Atomic orbital electron populations 1.23961 0.95577 1.02544 0.97167 1.23025 0.96403 0.97674 1.02844 1.20846 0.91350 0.97900 0.88082 1.46369 1.12229 1.45386 1.11872 1.24423 0.83622 1.04274 0.98392 1.19477 0.95861 0.94189 0.91434 0.89854 1.20461 0.98849 0.93653 0.98862 1.22025 0.98427 0.99445 0.96836 1.22048 1.00220 0.95897 0.99565 1.20475 1.01467 0.92921 0.97832 1.21621 0.96199 0.99020 0.97863 1.73890 1.24374 1.14718 0.99635 1.74713 0.99276 1.17242 1.25095 1.22810 0.93919 0.97247 0.83080 1.59226 1.17749 1.04929 1.38024 1.22154 1.00388 0.94616 0.92216 1.19415 0.96854 0.79046 0.92616 0.96072 1.21793 0.95893 1.03224 0.97846 1.21089 0.93935 0.99789 1.40084 0.91542 1.24922 0.96441 0.96955 0.95697 1.69918 1.25303 1.11979 1.45375 0.86409 0.83136 0.79171 0.78492 1.19680 1.21000 1.21011 0.88068 0.87602 0.87279 0.87214 0.88962 0.91156 0.89282 0.87792 0.88014 0.90877 0.90723 0.91391 0.90304 0.94715 0.89425 0.93956 0.89017 0.97933 0.95055 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 14.32 29.01 0.42 -1.19 16 2 C -0.18 -2.05 9.85 -36.03 -0.35 -2.40 16 3 C 0.14 1.86 6.26 -5.19 -0.03 1.83 16 4 N -0.47 -7.95 2.79 -115.37 -0.32 -8.27 16 5 C 0.16 2.65 6.58 -154.01 -1.01 1.63 16 6 C 0.01 0.14 2.61 -91.55 -0.24 -0.10 16 7 H 0.08 0.87 7.04 -51.93 -0.37 0.50 16 8 C -0.08 -0.88 5.42 -28.18 -0.15 -1.03 16 9 C -0.15 -1.36 9.80 -35.90 -0.35 -1.71 16 10 C -0.16 -1.37 9.80 -35.90 -0.35 -1.72 16 11 C -0.09 -0.78 6.12 -28.18 -0.17 -0.95 16 12 C -0.11 -1.24 5.29 -26.51 -0.14 -1.38 16 13 N -0.29 -5.81 12.12 32.99 0.40 -5.41 16 14 N -0.32 -7.36 12.07 30.31 0.37 -7.00 16 15 C 0.39 8.10 5.04 -318.88 -1.61 6.49 16 16 N -0.47 -10.33 4.66 -176.09 -0.82 -11.15 16 17 C 0.05 1.08 9.12 60.06 0.55 1.63 16 18 C 0.23 5.76 1.98 -68.87 -0.14 5.63 16 19 H 0.02 0.63 8.05 -51.92 -0.42 0.21 16 20 C -0.13 -3.25 8.84 37.16 0.33 -2.92 16 21 C -0.51 -13.56 7.97 -34.44 -0.27 -13.83 16 22 H 0.07 1.72 6.40 -52.49 -0.34 1.38 16 23 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 24 N -0.89 -25.17 11.32 55.43 0.63 -24.55 16 25 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 H 0.10 0.88 8.06 -52.48 -0.42 0.45 16 30 H 0.11 1.12 7.85 -52.49 -0.41 0.71 16 31 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.11 1.59 7.80 -51.93 -0.41 1.18 16 33 H 0.09 0.98 7.39 -51.93 -0.38 0.60 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 1.12 8.04 -51.93 -0.42 0.70 16 36 H 0.10 0.80 8.06 -52.48 -0.42 0.38 16 37 H 0.10 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.08 1.00 8.12 -51.93 -0.42 0.58 16 42 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.09 1.73 6.38 -51.93 -0.33 1.40 16 44 H 0.04 0.75 8.08 -51.93 -0.42 0.33 16 45 H 0.09 2.52 6.07 -51.93 -0.32 2.20 16 46 H 0.00 0.04 7.22 -51.93 -0.38 -0.33 16 47 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 385.96 15.07 5.82 5.82 Total: -1.00 -31.03 385.96 -10.55 -41.57 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -7.96 Total: 1.66 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -3.63 Total: -8.45 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 0.25 Total: -56.37 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.03 -10.55 -41.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356124138.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.092 kcal (2) G-P(sol) polarization free energy of solvation -31.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds