Wall clock time and date at job start Tue Mar 31 2020 11:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50697 * 119.99966 * 2 1 4 4 N 1.46501 * 109.47227 * 127.02169 * 3 2 1 5 5 C 1.36741 * 127.13444 * 86.44656 * 4 3 2 6 6 C 1.50704 * 126.34595 * 0.02562 * 5 4 3 7 7 H 1.09005 * 109.81510 * 0.52758 * 6 5 4 8 8 C 1.53024 * 109.64240 * 239.99821 * 6 5 4 9 9 C 1.50067 * 110.14487 * 190.88149 * 8 6 5 10 10 C 1.29445 * 124.07889 * 17.39159 * 9 8 6 11 11 C 1.50067 * 124.06830 * 359.01366 * 10 9 8 12 12 C 1.53022 * 110.09726 * 17.58504 * 11 10 9 13 13 N 1.30292 * 107.30774 * 180.26664 * 5 4 3 14 14 N 1.28529 * 110.04914 * 359.56146 * 13 5 4 15 15 C 1.31215 * 109.86320 * 0.44953 * 14 13 5 16 16 N 1.38581 * 126.47570 * 179.72642 * 15 14 13 17 17 C 1.46900 * 111.00362 * 293.03843 * 16 15 14 18 18 C 1.46901 * 110.99776 * 56.99504 * 16 15 14 19 19 H 1.09009 * 109.46593 * 299.99971 * 18 16 15 20 20 C 1.52998 * 109.47335 * 59.99369 * 18 16 15 21 21 C 1.50692 * 109.47311 * 180.02562 * 18 16 15 22 22 H 1.08001 * 120.00025 * 359.97438 * 21 18 16 23 23 C 1.37881 * 120.00317 * 179.97438 * 21 18 16 24 24 N 1.31517 * 119.99527 * 359.97438 * 23 21 18 25 25 Si 1.86802 * 120.00241 * 179.97438 * 23 21 18 26 26 H 1.48497 * 109.46977 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46861 * 119.99627 * 25 23 21 28 28 H 1.48499 * 109.47247 * 239.99812 * 25 23 21 29 29 H 1.08003 * 120.00085 * 180.02562 * 1 2 3 30 30 H 1.08001 * 120.00014 * 359.97438 * 1 2 3 31 31 H 1.07995 * 119.99866 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.47108 * 7.02881 * 3 2 1 33 33 H 1.08995 * 109.47245 * 247.02551 * 3 2 1 34 34 H 1.09000 * 109.35745 * 70.67569 * 8 6 5 35 35 H 1.08998 * 109.24739 * 311.01982 * 8 6 5 36 36 H 1.08009 * 117.96071 * 197.10690 * 9 8 6 37 37 H 1.07994 * 117.96138 * 179.24623 * 10 9 8 38 38 H 1.09003 * 109.54241 * 257.29453 * 11 10 9 39 39 H 1.09001 * 109.11679 * 137.60838 * 11 10 9 40 40 H 1.09003 * 109.64651 * 190.69107 * 12 11 10 41 41 H 1.08996 * 109.64370 * 70.05343 * 12 11 10 42 42 H 1.08993 * 109.46777 * 67.72072 * 17 16 15 43 43 H 1.08994 * 109.47154 * 187.72520 * 17 16 15 44 44 H 1.09001 * 109.46633 * 307.72561 * 17 16 15 45 45 H 1.09003 * 109.46873 * 180.02562 * 20 18 16 46 46 H 1.08994 * 109.47541 * 300.00384 * 20 18 16 47 47 H 1.08995 * 109.46925 * 60.00689 * 20 18 16 48 48 H 0.97005 * 119.99377 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0280 1.3122 1.1028 5 6 4.3036 0.8199 1.0870 6 6 4.9921 0.1605 -0.0802 7 1 4.3212 0.1355 -0.9389 8 6 5.3953 -1.2660 0.2994 9 6 6.3071 -1.8406 -0.7449 10 6 6.9425 -1.1320 -1.6222 11 6 6.8397 0.3612 -1.7311 12 6 6.2610 0.9439 -0.4399 13 7 4.8116 1.0219 2.2697 14 7 3.9536 1.6120 3.0229 15 6 2.8397 1.8113 2.3587 16 7 1.6892 2.4146 2.8415 17 6 1.0605 1.5914 3.8831 18 6 1.9733 3.7671 3.3393 19 1 2.7038 3.7112 4.1465 20 6 2.5351 4.6219 2.2015 21 6 0.7018 4.3898 3.8554 22 1 -0.2248 3.8363 3.8171 23 6 0.7213 5.6661 4.3767 24 7 1.8498 6.3399 4.4238 25 14 -0.8550 6.4383 5.0158 26 1 -1.9776 5.4802 4.8512 27 1 -0.6954 6.7706 6.4544 28 1 -1.1449 7.6775 4.2507 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3619 2.1297 0.1258 33 1 2.5926 1.4192 -0.9461 34 1 4.5016 -1.8850 0.3789 35 1 5.9105 -1.2503 1.2598 36 1 6.4451 -2.9116 -0.7628 37 1 7.5837 -1.6479 -2.3216 38 1 6.1913 0.6220 -2.5676 39 1 7.8333 0.7760 -1.9011 40 1 6.0125 1.9944 -0.5910 41 1 6.9906 0.8488 0.3643 42 1 1.7007 1.5701 4.7650 43 1 0.0923 2.0167 4.1471 44 1 0.9221 0.5767 3.5100 45 1 2.7463 5.6253 2.5710 46 1 3.4549 4.1714 1.8285 47 1 1.8047 4.6778 1.3944 48 1 1.8636 7.2378 4.7908 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356124138.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:45 Heat of formation + Delta-G solvation = 102.904600 kcal Electronic energy + Delta-G solvation = -27504.045103 eV Core-core repulsion = 23981.599074 eV Total energy + Delta-G solvation = -3522.446029 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.99248 -39.55817 -38.65641 -37.08352 -34.93594 -33.77143 -33.01235 -31.70956 -31.34825 -29.71163 -27.85992 -27.35973 -26.10259 -24.80263 -23.90063 -23.39769 -21.85236 -21.02924 -20.73834 -18.66540 -18.51676 -18.06933 -17.49009 -17.08994 -16.77434 -16.37914 -16.07517 -15.54244 -15.49466 -15.02215 -14.67016 -14.58894 -14.29567 -14.16806 -13.96373 -13.70595 -13.50820 -13.29771 -13.18942 -13.08121 -12.84077 -12.70119 -12.53157 -12.45757 -12.25164 -12.20628 -12.06971 -11.99772 -11.69539 -11.45899 -11.27235 -11.08602 -10.99154 -10.59586 -10.49198 -9.90938 -9.82654 -9.53184 -8.15075 -6.29440 0.77012 0.99943 1.44451 1.45525 1.46661 1.57704 1.66427 1.84969 2.41701 3.02550 3.17078 3.27613 3.59318 3.77527 3.79460 3.91992 4.01234 4.15684 4.19136 4.29868 4.36513 4.40575 4.46373 4.56038 4.60420 4.62417 4.69034 4.71610 4.80318 4.84685 4.91190 4.94037 5.00087 5.01899 5.04137 5.08623 5.11812 5.25760 5.36441 5.39615 5.55884 5.59903 5.63949 5.71809 5.80696 5.90059 5.97520 6.09816 6.13894 6.63026 6.81643 7.39936 7.79442 8.92451 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.019975 B = 0.003588 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.433270 B = 7801.173009 C = 8407.906795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.191 4.191 3 C 0.133 3.867 4 N -0.459 5.459 5 C 0.186 3.814 6 C 0.013 3.987 7 H 0.110 0.890 8 C -0.076 4.076 9 C -0.159 4.159 10 C -0.154 4.154 11 C -0.086 4.086 12 C -0.108 4.108 13 N -0.324 5.324 14 N -0.365 5.365 15 C 0.365 3.635 16 N -0.462 5.462 17 C 0.059 3.941 18 C 0.236 3.764 19 H -0.031 1.031 20 C -0.110 4.110 21 C -0.520 4.520 22 H 0.075 0.925 23 C 0.012 3.988 24 N -0.922 5.922 25 Si 0.970 3.030 26 H -0.258 1.258 27 H -0.285 1.285 28 H -0.280 1.280 29 H 0.123 0.877 30 H 0.101 0.899 31 H 0.120 0.880 32 H 0.096 0.904 33 H 0.122 0.878 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.012 0.988 43 H 0.091 0.909 44 H 0.067 0.933 45 H 0.066 0.934 46 H -0.003 1.003 47 H 0.041 0.959 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.190 -15.950 -16.807 23.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.210 4.210 3 C 0.012 3.988 4 N -0.151 5.151 5 C -0.083 4.083 6 C -0.008 4.008 7 H 0.128 0.872 8 C -0.114 4.114 9 C -0.177 4.177 10 C -0.172 4.172 11 C -0.123 4.123 12 C -0.147 4.147 13 N -0.164 5.164 14 N -0.208 5.208 15 C 0.008 3.992 16 N -0.188 5.188 17 C -0.089 4.089 18 C 0.130 3.870 19 H -0.013 1.013 20 C -0.168 4.168 21 C -0.559 4.559 22 H 0.093 0.907 23 C -0.187 4.187 24 N -0.561 5.561 25 Si 0.795 3.205 26 H -0.182 1.182 27 H -0.211 1.211 28 H -0.206 1.206 29 H 0.141 0.859 30 H 0.120 0.880 31 H 0.138 0.862 32 H 0.114 0.886 33 H 0.140 0.860 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.109 0.891 39 H 0.104 0.896 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.031 0.969 43 H 0.109 0.891 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.016 0.984 47 H 0.060 0.940 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.898 -15.717 -15.998 22.614 hybrid contribution -0.800 0.865 0.606 1.325 sum 2.099 -14.852 -15.392 21.492 Atomic orbital electron populations 1.24151 0.95312 1.03413 0.95213 1.22952 0.96665 0.96874 1.04524 1.21187 0.90996 0.98787 0.87789 1.46572 1.12929 1.44292 1.11335 1.25329 0.83018 1.01616 0.98343 1.19784 0.96208 0.94562 0.90281 0.87184 1.20385 0.99490 0.92933 0.98572 1.22017 0.98639 1.00396 0.96622 1.22247 0.99710 0.95674 0.99542 1.20490 1.02260 0.93097 0.96419 1.21596 0.95500 0.98618 0.98962 1.73808 1.24784 1.16457 1.01305 1.74590 1.00526 1.18529 1.27180 1.22687 0.93385 0.98613 0.84564 1.59157 1.18078 1.03745 1.37841 1.22151 0.99696 0.95765 0.91272 1.19074 0.95388 0.81352 0.91201 1.01293 1.21540 0.95850 1.01623 0.97793 1.21357 0.94301 1.00091 1.40100 0.90708 1.25803 0.99643 0.97490 0.95799 1.70070 1.27575 1.12302 1.46179 0.85321 0.79352 0.78348 0.77489 1.18210 1.21110 1.20576 0.85926 0.88022 0.86248 0.88554 0.86012 0.90429 0.91734 0.86120 0.85821 0.89090 0.89584 0.92468 0.92353 0.96893 0.89075 0.91415 0.91520 0.98388 0.94000 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 14.32 67.77 0.97 -1.59 16 2 C -0.19 -3.84 9.85 25.64 0.25 -3.59 16 3 C 0.13 3.28 6.26 85.63 0.54 3.82 16 4 N -0.46 -15.50 2.79 -518.91 -1.45 -16.95 16 5 C 0.19 6.11 6.58 137.64 0.91 7.01 16 6 C 0.01 0.28 2.61 -11.40 -0.03 0.25 16 7 H 0.11 1.92 7.04 -2.38 -0.02 1.90 16 8 C -0.08 -1.54 5.42 29.66 0.16 -1.38 16 9 C -0.16 -2.47 9.80 27.04 0.27 -2.20 16 10 C -0.15 -2.12 9.80 27.04 0.27 -1.86 16 11 C -0.09 -1.24 6.12 29.66 0.18 -1.06 16 12 C -0.11 -2.35 5.29 30.74 0.16 -2.18 16 13 N -0.32 -13.67 12.12 -49.53 -0.60 -14.27 16 14 N -0.37 -17.60 12.07 -58.01 -0.70 -18.30 16 15 C 0.37 15.72 5.04 260.11 1.31 17.03 16 16 N -0.46 -20.62 4.66 -711.02 -3.31 -23.93 16 17 C 0.06 2.38 9.12 127.69 1.16 3.55 16 18 C 0.24 12.53 1.98 44.17 0.09 12.62 16 19 H -0.03 -1.92 8.05 -2.38 -0.02 -1.94 16 20 C -0.11 -5.71 8.84 71.98 0.64 -5.07 16 21 C -0.52 -28.01 7.97 25.60 0.20 -27.81 16 22 H 0.07 3.83 6.40 -2.91 -0.02 3.81 16 23 C 0.01 0.64 5.30 84.66 0.45 1.09 16 24 N -0.92 -53.82 11.32 21.45 0.24 -53.57 16 25 Si 0.97 42.68 29.54 68.60 2.03 44.70 16 26 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 27 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 28 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 29 H 0.12 1.68 8.06 -2.91 -0.02 1.66 16 30 H 0.10 1.92 7.85 -2.91 -0.02 1.90 16 31 H 0.12 2.18 8.06 -2.91 -0.02 2.16 16 32 H 0.10 2.67 7.80 -2.39 -0.02 2.65 16 33 H 0.12 2.23 7.39 -2.39 -0.02 2.21 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 35 H 0.06 1.64 8.04 -2.39 -0.02 1.62 16 36 H 0.12 1.49 8.06 -2.91 -0.02 1.47 16 37 H 0.12 1.24 8.06 -2.91 -0.02 1.21 16 38 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.06 1.50 8.12 -2.39 -0.02 1.48 16 42 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.09 3.59 6.38 -2.39 -0.02 3.57 16 44 H 0.07 2.37 8.08 -2.39 -0.02 2.35 16 45 H 0.07 3.81 6.07 -2.39 -0.01 3.79 16 46 H 0.00 -0.15 7.22 -2.39 -0.02 -0.17 16 47 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.26 14.53 8.31 -92.70 -0.77 13.76 16 Total: -1.00 -70.70 385.96 4.65 -66.05 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.92 Total: 17.65 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 7.52 Total: -1.38 kcal Atomic # 7 Polarization: -121.21 SS G_CDS: -5.82 Total: -127.02 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -70.70 4.65 -66.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356124138.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.953 kcal (2) G-P(sol) polarization free energy of solvation -70.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds