Wall clock time and date at job start Tue Mar 31 2020 11:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50706 * 119.99833 * 2 1 4 4 N 1.46504 * 109.47101 * 124.69876 * 3 2 1 5 5 C 1.36740 * 127.13255 * 93.73292 * 4 3 2 6 6 C 1.50694 * 126.35028 * 359.97438 * 5 4 3 7 7 H 1.08996 * 109.64104 * 0.13184 * 6 5 4 8 8 C 1.53029 * 109.64075 * 239.71598 * 6 5 4 9 9 C 1.50075 * 110.14702 * 190.87856 * 8 6 5 10 10 C 1.29442 * 124.07360 * 17.39106 * 9 8 6 11 11 C 1.50080 * 124.07080 * 359.01539 * 10 9 8 12 12 C 1.53022 * 110.09346 * 17.58052 * 11 10 9 13 13 N 1.30293 * 107.30090 * 179.73383 * 5 4 3 14 14 N 1.28526 * 110.05573 * 0.26140 * 13 5 4 15 15 C 1.31222 * 109.86015 * 359.97438 * 14 13 5 16 16 N 1.38582 * 126.47194 * 180.02562 * 15 14 13 17 17 C 1.46901 * 111.00172 * 307.16297 * 16 15 14 18 18 C 1.46905 * 111.00066 * 71.11972 * 16 15 14 19 19 H 1.09001 * 109.46535 * 54.99925 * 18 16 15 20 20 C 1.52991 * 109.46993 * 294.99963 * 18 16 15 21 21 C 1.50695 * 109.46811 * 174.99654 * 18 16 15 22 22 H 1.07993 * 120.00626 * 0.02562 * 21 18 16 23 23 C 1.37880 * 119.99742 * 179.97438 * 21 18 16 24 24 N 1.31522 * 119.99729 * 0.02562 * 23 21 18 25 25 Si 1.86803 * 120.00222 * 179.97438 * 23 21 18 26 26 H 1.48495 * 109.46801 * 90.00237 * 25 23 21 27 27 H 1.48496 * 109.47060 * 210.00218 * 25 23 21 28 28 H 1.48499 * 109.47005 * 330.00412 * 25 23 21 29 29 H 1.08006 * 120.00082 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.00260 * 180.02562 * 1 2 3 31 31 H 1.07996 * 120.00196 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.47132 * 4.70040 * 3 2 1 33 33 H 1.09000 * 109.46866 * 244.69547 * 3 2 1 34 34 H 1.09003 * 109.35470 * 70.67534 * 8 6 5 35 35 H 1.08997 * 109.24686 * 311.01478 * 8 6 5 36 36 H 1.07994 * 117.95897 * 197.11165 * 9 8 6 37 37 H 1.07996 * 117.96078 * 179.24693 * 10 9 8 38 38 H 1.09003 * 109.53835 * 257.29137 * 11 10 9 39 39 H 1.09004 * 109.11791 * 137.60642 * 11 10 9 40 40 H 1.08998 * 109.64029 * 190.68875 * 12 11 10 41 41 H 1.08997 * 109.64044 * 70.05988 * 12 11 10 42 42 H 1.09006 * 109.46847 * 60.60594 * 17 16 15 43 43 H 1.09004 * 109.47163 * 180.59917 * 17 16 15 44 44 H 1.08996 * 109.47504 * 300.60522 * 17 16 15 45 45 H 1.08997 * 109.47059 * 179.97438 * 20 18 16 46 46 H 1.09006 * 109.47432 * 299.99888 * 20 18 16 47 47 H 1.09000 * 109.47331 * 59.99750 * 20 18 16 48 48 H 0.96999 * 119.99849 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9885 1.3350 1.1356 5 6 4.3061 0.9693 1.1367 6 6 5.0908 0.4532 -0.0417 7 1 4.4475 0.4120 -0.9206 8 6 5.6261 -0.9462 0.2698 9 6 6.6208 -1.3633 -0.7737 10 6 7.2054 -0.5435 -1.5871 11 6 6.9543 0.9359 -1.6145 12 6 6.2831 1.3794 -0.3128 13 7 4.7587 1.1547 2.3444 14 7 3.8225 1.6040 3.1018 15 6 2.7134 1.7308 2.4121 16 7 1.4944 2.1862 2.8888 17 6 1.0835 1.4373 4.0839 18 6 1.5416 3.6289 3.1618 19 1 1.8664 4.1577 2.2658 20 6 2.5273 3.9005 4.2999 21 6 0.1700 4.1099 3.5596 22 1 -0.6542 3.4136 3.6055 23 6 -0.0324 5.4388 3.8661 24 7 0.9714 6.2867 3.8108 25 14 -1.7328 6.0354 4.3586 26 1 -1.8872 5.9289 5.8316 27 1 -1.8997 7.4516 3.9444 28 1 -2.7630 5.1997 3.6912 29 1 -0.5400 0.9354 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8499 -0.9353 0.0004 32 1 1.3581 2.1319 0.0842 33 1 2.6255 1.4002 -0.9291 34 1 4.7980 -1.6549 0.2834 35 1 6.1097 -0.9367 1.2466 36 1 6.8673 -2.4121 -0.8476 37 1 7.9152 -0.9499 -2.2923 38 1 6.3067 1.1802 -2.4565 39 1 7.9050 1.4573 -1.7266 40 1 5.9335 2.4069 -0.4125 41 1 6.9956 1.3096 0.5091 42 1 1.8276 1.5700 4.8694 43 1 0.1189 1.8078 4.4310 44 1 0.9992 0.3788 3.8383 45 1 2.5627 4.9709 4.5022 46 1 2.2026 3.3715 5.1960 47 1 3.5194 3.5525 4.0121 48 1 0.8290 7.2218 4.0260 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356124140.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:49 Heat of formation + Delta-G solvation = 122.658439 kcal Electronic energy + Delta-G solvation = -27505.729631 eV Core-core repulsion = 23984.140193 eV Total energy + Delta-G solvation = -3521.589438 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.51057 -38.63072 -37.10766 -35.90810 -32.94567 -32.63520 -31.88823 -30.90877 -29.00565 -28.02039 -26.63884 -25.19870 -25.18801 -23.74813 -22.93854 -21.49779 -20.56610 -19.73608 -19.41953 -17.80391 -16.83507 -16.38953 -16.13585 -15.80844 -15.33973 -15.03184 -14.61662 -14.46412 -13.93301 -13.69887 -13.55658 -13.37195 -13.07320 -12.94777 -12.52266 -12.40686 -12.29602 -12.21384 -11.49569 -11.46682 -11.27828 -11.16822 -11.03280 -10.94487 -10.81511 -10.76901 -10.57206 -10.41411 -10.15355 -10.12571 -9.87155 -9.68720 -9.50838 -9.13600 -8.90034 -8.47150 -8.37511 -7.64616 -6.07948 -4.14264 2.00463 2.13011 2.27440 2.91886 3.26739 3.33459 3.35274 3.39069 4.31798 4.35611 4.59845 4.65525 4.72673 4.79198 4.89276 4.91102 5.10640 5.14492 5.17719 5.24052 5.28998 5.38999 5.52778 5.65201 5.73587 5.77526 5.82258 5.86659 5.89802 5.98182 6.07723 6.13843 6.35097 6.41436 6.46715 6.50353 6.51833 6.63396 6.69102 6.78407 6.86532 7.07273 7.10078 7.17545 7.54917 7.66356 7.76393 7.93288 8.26114 8.48510 8.89230 9.31583 9.50596 10.98763 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.019117 B = 0.003615 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.291174 B = 7743.205623 C = 8241.395738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.182 4.182 3 C 0.142 3.858 4 N -0.465 5.465 5 C 0.160 3.840 6 C 0.011 3.989 7 H 0.083 0.917 8 C -0.080 4.080 9 C -0.149 4.149 10 C -0.159 4.159 11 C -0.090 4.090 12 C -0.108 4.108 13 N -0.289 5.289 14 N -0.316 5.316 15 C 0.380 3.620 16 N -0.468 5.468 17 C 0.049 3.951 18 C 0.225 3.775 19 H 0.034 0.966 20 C -0.173 4.173 21 C -0.507 4.507 22 H 0.066 0.934 23 C 0.062 3.938 24 N -0.889 5.889 25 Si 0.900 3.100 26 H -0.280 1.280 27 H -0.287 1.287 28 H -0.273 1.273 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.041 0.959 43 H 0.087 0.913 44 H 0.042 0.958 45 H 0.085 0.915 46 H 0.032 0.968 47 H 0.032 0.968 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.099 -13.434 -12.428 19.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.201 4.201 3 C 0.020 3.980 4 N -0.158 5.158 5 C -0.107 4.107 6 C -0.010 4.010 7 H 0.101 0.899 8 C -0.118 4.118 9 C -0.167 4.167 10 C -0.177 4.177 11 C -0.127 4.127 12 C -0.147 4.147 13 N -0.129 5.129 14 N -0.159 5.159 15 C 0.024 3.976 16 N -0.194 5.194 17 C -0.099 4.099 18 C 0.120 3.880 19 H 0.052 0.948 20 C -0.232 4.232 21 C -0.546 4.546 22 H 0.084 0.916 23 C -0.140 4.140 24 N -0.527 5.527 25 Si 0.727 3.273 26 H -0.206 1.206 27 H -0.213 1.213 28 H -0.198 1.198 29 H 0.125 0.875 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.059 0.941 43 H 0.105 0.895 44 H 0.061 0.939 45 H 0.104 0.896 46 H 0.051 0.949 47 H 0.051 0.949 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.719 -13.244 -11.593 18.840 hybrid contribution -1.308 0.476 -0.247 1.414 sum 5.411 -12.769 -11.840 18.234 Atomic orbital electron populations 1.23962 0.95594 1.02550 0.96576 1.22938 0.96374 0.97442 1.03310 1.20849 0.92172 0.98011 0.87004 1.46349 1.10041 1.49111 1.10319 1.24422 0.82584 1.05777 0.97928 1.19481 0.94822 0.95249 0.91425 0.89858 1.20460 0.97776 0.94525 0.99038 1.22024 0.98314 0.99266 0.97139 1.22051 1.00316 0.95467 0.99897 1.20479 1.00961 0.93448 0.97821 1.21616 0.96517 0.98548 0.98003 1.73882 1.23943 1.15845 0.99228 1.74759 0.96770 1.19087 1.25321 1.22893 0.93450 0.98830 0.82403 1.59400 1.18236 1.08463 1.33336 1.22189 1.01894 0.95389 0.90399 1.19381 0.96343 0.77540 0.94722 0.94764 1.22425 0.97467 1.04157 0.99141 1.21003 0.93580 0.93723 1.46260 0.91631 1.24915 0.97101 0.96612 0.95368 1.69915 1.30475 1.03680 1.48632 0.86472 0.84047 0.77934 0.78807 1.20626 1.21259 1.19809 0.87495 0.88168 0.87419 0.87485 0.88929 0.91127 0.89304 0.87795 0.88019 0.90860 0.90727 0.91380 0.90310 0.94067 0.89461 0.93935 0.89595 0.94920 0.94878 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 14.32 29.02 0.42 -1.26 16 2 C -0.18 -2.18 9.85 -36.02 -0.35 -2.53 16 3 C 0.14 1.94 6.40 -5.19 -0.03 1.90 16 4 N -0.47 -8.03 2.79 -115.36 -0.32 -8.35 16 5 C 0.16 2.64 6.58 -154.02 -1.01 1.63 16 6 C 0.01 0.14 2.60 -91.56 -0.24 -0.10 16 7 H 0.08 0.87 6.86 -51.93 -0.36 0.52 16 8 C -0.08 -0.88 5.42 -28.17 -0.15 -1.03 16 9 C -0.15 -1.37 9.80 -35.90 -0.35 -1.72 16 10 C -0.16 -1.37 9.80 -35.89 -0.35 -1.73 16 11 C -0.09 -0.79 6.12 -28.17 -0.17 -0.96 16 12 C -0.11 -1.24 5.29 -26.52 -0.14 -1.38 16 13 N -0.29 -5.78 12.12 32.99 0.40 -5.38 16 14 N -0.32 -7.05 9.85 30.31 0.30 -6.75 16 15 C 0.38 7.95 6.20 -318.88 -1.98 5.97 16 16 N -0.47 -10.19 4.77 -176.08 -0.84 -11.03 16 17 C 0.05 0.99 8.69 60.07 0.52 1.51 16 18 C 0.22 5.67 2.32 -68.87 -0.16 5.51 16 19 H 0.03 0.97 8.11 -51.93 -0.42 0.54 16 20 C -0.17 -4.44 8.19 37.15 0.30 -4.14 16 21 C -0.51 -13.37 7.89 -34.44 -0.27 -13.64 16 22 H 0.07 1.69 6.76 -52.49 -0.35 1.34 16 23 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 24 N -0.89 -25.03 11.32 55.43 0.63 -24.40 16 25 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 29 H 0.11 1.26 7.84 -52.48 -0.41 0.85 16 30 H 0.10 0.95 8.06 -52.49 -0.42 0.53 16 31 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.11 1.60 7.79 -51.93 -0.40 1.20 16 33 H 0.09 1.00 7.07 -51.93 -0.37 0.63 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 1.11 8.05 -51.93 -0.42 0.70 16 36 H 0.10 0.81 8.06 -52.49 -0.42 0.38 16 37 H 0.10 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.08 1.00 8.12 -51.93 -0.42 0.57 16 42 H 0.04 0.87 6.35 -51.93 -0.33 0.54 16 43 H 0.09 1.77 6.43 -51.93 -0.33 1.43 16 44 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 46 H 0.03 0.81 6.46 -51.93 -0.34 0.48 16 47 H 0.03 0.84 5.97 -51.93 -0.31 0.53 16 48 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 379.62 15.07 5.72 5.72 Total: -1.00 -30.44 379.62 -10.93 -41.37 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -7.72 Total: 3.51 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -4.07 Total: -10.37 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: 0.16 Total: -55.92 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.44 -10.93 -41.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356124140.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.028 kcal (2) G-P(sol) polarization free energy of solvation -30.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds