Wall clock time and date at job start Tue Mar 31 2020 11:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50706 * 119.99833 * 2 1 4 4 N 1.46504 * 109.47101 * 124.69876 * 3 2 1 5 5 C 1.36740 * 127.13255 * 93.73292 * 4 3 2 6 6 C 1.50694 * 126.35028 * 359.97438 * 5 4 3 7 7 H 1.08996 * 109.64104 * 0.13184 * 6 5 4 8 8 C 1.53029 * 109.64075 * 239.71598 * 6 5 4 9 9 C 1.50075 * 110.14702 * 190.87856 * 8 6 5 10 10 C 1.29442 * 124.07360 * 17.39106 * 9 8 6 11 11 C 1.50080 * 124.07080 * 359.01539 * 10 9 8 12 12 C 1.53022 * 110.09346 * 17.58052 * 11 10 9 13 13 N 1.30293 * 107.30090 * 179.73383 * 5 4 3 14 14 N 1.28526 * 110.05573 * 0.26140 * 13 5 4 15 15 C 1.31222 * 109.86015 * 359.97438 * 14 13 5 16 16 N 1.38582 * 126.47194 * 180.02562 * 15 14 13 17 17 C 1.46901 * 111.00172 * 307.16297 * 16 15 14 18 18 C 1.46905 * 111.00066 * 71.11972 * 16 15 14 19 19 H 1.09001 * 109.46535 * 54.99925 * 18 16 15 20 20 C 1.52991 * 109.46993 * 294.99963 * 18 16 15 21 21 C 1.50695 * 109.46811 * 174.99654 * 18 16 15 22 22 H 1.07993 * 120.00626 * 0.02562 * 21 18 16 23 23 C 1.37880 * 119.99742 * 179.97438 * 21 18 16 24 24 N 1.31522 * 119.99729 * 0.02562 * 23 21 18 25 25 Si 1.86803 * 120.00222 * 179.97438 * 23 21 18 26 26 H 1.48495 * 109.46801 * 90.00237 * 25 23 21 27 27 H 1.48496 * 109.47060 * 210.00218 * 25 23 21 28 28 H 1.48499 * 109.47005 * 330.00412 * 25 23 21 29 29 H 1.08006 * 120.00082 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.00260 * 180.02562 * 1 2 3 31 31 H 1.07996 * 120.00196 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.47132 * 4.70040 * 3 2 1 33 33 H 1.09000 * 109.46866 * 244.69547 * 3 2 1 34 34 H 1.09003 * 109.35470 * 70.67534 * 8 6 5 35 35 H 1.08997 * 109.24686 * 311.01478 * 8 6 5 36 36 H 1.07994 * 117.95897 * 197.11165 * 9 8 6 37 37 H 1.07996 * 117.96078 * 179.24693 * 10 9 8 38 38 H 1.09003 * 109.53835 * 257.29137 * 11 10 9 39 39 H 1.09004 * 109.11791 * 137.60642 * 11 10 9 40 40 H 1.08998 * 109.64029 * 190.68875 * 12 11 10 41 41 H 1.08997 * 109.64044 * 70.05988 * 12 11 10 42 42 H 1.09006 * 109.46847 * 60.60594 * 17 16 15 43 43 H 1.09004 * 109.47163 * 180.59917 * 17 16 15 44 44 H 1.08996 * 109.47504 * 300.60522 * 17 16 15 45 45 H 1.08997 * 109.47059 * 179.97438 * 20 18 16 46 46 H 1.09006 * 109.47432 * 299.99888 * 20 18 16 47 47 H 1.09000 * 109.47331 * 59.99750 * 20 18 16 48 48 H 0.96999 * 119.99849 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9885 1.3350 1.1356 5 6 4.3061 0.9693 1.1367 6 6 5.0908 0.4532 -0.0417 7 1 4.4475 0.4120 -0.9206 8 6 5.6261 -0.9462 0.2698 9 6 6.6208 -1.3633 -0.7737 10 6 7.2054 -0.5435 -1.5871 11 6 6.9543 0.9359 -1.6145 12 6 6.2831 1.3794 -0.3128 13 7 4.7587 1.1547 2.3444 14 7 3.8225 1.6040 3.1018 15 6 2.7134 1.7308 2.4121 16 7 1.4944 2.1862 2.8888 17 6 1.0835 1.4373 4.0839 18 6 1.5416 3.6289 3.1618 19 1 1.8664 4.1577 2.2658 20 6 2.5273 3.9005 4.2999 21 6 0.1700 4.1099 3.5596 22 1 -0.6542 3.4136 3.6055 23 6 -0.0324 5.4388 3.8661 24 7 0.9714 6.2867 3.8108 25 14 -1.7328 6.0354 4.3586 26 1 -1.8872 5.9289 5.8316 27 1 -1.8997 7.4516 3.9444 28 1 -2.7630 5.1997 3.6912 29 1 -0.5400 0.9354 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8499 -0.9353 0.0004 32 1 1.3581 2.1319 0.0842 33 1 2.6255 1.4002 -0.9291 34 1 4.7980 -1.6549 0.2834 35 1 6.1097 -0.9367 1.2466 36 1 6.8673 -2.4121 -0.8476 37 1 7.9152 -0.9499 -2.2923 38 1 6.3067 1.1802 -2.4565 39 1 7.9050 1.4573 -1.7266 40 1 5.9335 2.4069 -0.4125 41 1 6.9956 1.3096 0.5091 42 1 1.8276 1.5700 4.8694 43 1 0.1189 1.8078 4.4310 44 1 0.9992 0.3788 3.8383 45 1 2.5627 4.9709 4.5022 46 1 2.2026 3.3715 5.1960 47 1 3.5194 3.5525 4.0121 48 1 0.8290 7.2218 4.0260 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356124140.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:48 Heat of formation + Delta-G solvation = 108.520566 kcal Electronic energy + Delta-G solvation = -27506.342695 eV Core-core repulsion = 23984.140193 eV Total energy + Delta-G solvation = -3522.202502 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.98392 -39.59445 -38.80687 -37.08800 -34.87556 -33.77616 -33.02341 -31.70550 -30.88875 -29.50483 -27.82844 -27.28349 -26.85724 -24.76471 -23.83999 -23.24878 -21.73289 -21.12951 -20.73305 -18.65421 -18.39708 -18.06268 -17.42611 -17.10900 -16.83554 -16.43229 -16.08779 -15.59272 -15.34678 -14.93376 -14.70718 -14.58924 -14.37907 -14.06265 -13.95427 -13.51006 -13.35104 -13.26791 -13.19081 -13.10086 -12.92049 -12.72123 -12.60328 -12.50093 -12.34785 -12.09441 -12.05619 -11.97710 -11.68115 -11.43531 -11.25813 -11.06092 -10.89696 -10.53864 -10.47947 -9.93785 -9.82228 -9.41499 -8.14447 -6.28170 0.76980 1.00234 1.45240 1.45869 1.46980 1.56417 1.69267 1.85142 2.42187 3.07406 3.16261 3.28155 3.60725 3.77636 3.79445 3.89819 4.01302 4.14503 4.22978 4.30576 4.36705 4.40979 4.46624 4.56933 4.60783 4.65598 4.69761 4.72243 4.87138 4.93605 4.99652 5.00369 5.02500 5.04473 5.08694 5.09018 5.11412 5.25728 5.38646 5.42810 5.59716 5.61796 5.64798 5.74104 5.80771 5.86583 6.01521 6.10129 6.20060 6.64938 6.81696 7.41077 7.79949 8.92523 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.019117 B = 0.003615 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.291174 B = 7743.205623 C = 8241.395738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.189 4.189 3 C 0.135 3.865 4 N -0.462 5.462 5 C 0.184 3.816 6 C 0.012 3.988 7 H 0.108 0.892 8 C -0.075 4.075 9 C -0.159 4.159 10 C -0.154 4.154 11 C -0.086 4.086 12 C -0.108 4.108 13 N -0.325 5.325 14 N -0.349 5.349 15 C 0.356 3.644 16 N -0.461 5.461 17 C 0.055 3.945 18 C 0.237 3.763 19 H -0.003 1.003 20 C -0.154 4.154 21 C -0.516 4.516 22 H 0.072 0.928 23 C 0.014 3.986 24 N -0.922 5.922 25 Si 0.968 3.032 26 H -0.276 1.276 27 H -0.287 1.287 28 H -0.261 1.261 29 H 0.097 0.903 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.089 0.911 33 H 0.124 0.876 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.025 0.975 43 H 0.086 0.914 44 H 0.064 0.936 45 H 0.060 0.940 46 H 0.032 0.968 47 H 0.026 0.974 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.416 -15.215 -14.550 21.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.208 4.208 3 C 0.014 3.986 4 N -0.154 5.154 5 C -0.084 4.084 6 C -0.009 4.009 7 H 0.126 0.874 8 C -0.113 4.113 9 C -0.176 4.176 10 C -0.172 4.172 11 C -0.123 4.123 12 C -0.146 4.146 13 N -0.164 5.164 14 N -0.192 5.192 15 C -0.002 4.002 16 N -0.186 5.186 17 C -0.093 4.093 18 C 0.131 3.869 19 H 0.015 0.985 20 C -0.214 4.214 21 C -0.554 4.554 22 H 0.090 0.910 23 C -0.186 4.186 24 N -0.561 5.561 25 Si 0.793 3.207 26 H -0.202 1.202 27 H -0.212 1.212 28 H -0.185 1.185 29 H 0.116 0.884 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.107 0.893 33 H 0.142 0.858 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.044 0.956 43 H 0.105 0.895 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.051 0.949 47 H 0.045 0.955 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.032 -15.054 -13.735 21.252 hybrid contribution -1.012 1.006 0.343 1.467 sum 5.020 -14.048 -13.392 20.047 Atomic orbital electron populations 1.24123 0.95456 1.03213 0.95137 1.22898 0.96552 0.96820 1.04514 1.21151 0.91999 0.98590 0.86825 1.46575 1.10712 1.48136 1.09932 1.25315 0.82235 1.02762 0.98088 1.19786 0.94906 0.95974 0.90236 0.87363 1.20384 0.98451 0.93707 0.98783 1.22022 0.98326 1.00367 0.96934 1.22245 1.00032 0.95058 0.99878 1.20493 1.01545 0.93885 0.96383 1.21587 0.95989 0.97880 0.99169 1.73809 1.24010 1.17822 1.00786 1.74622 0.97657 1.19917 1.27038 1.22823 0.92972 1.00474 0.83891 1.59276 1.18978 1.06645 1.33725 1.22166 1.01135 0.96466 0.89501 1.19028 0.95721 0.79635 0.92545 0.98487 1.22219 0.97472 1.02214 0.99466 1.21253 0.94015 0.94106 1.46063 0.91010 1.25760 1.00829 0.96750 0.95219 1.70061 1.32623 1.03922 1.49485 0.85407 0.79575 0.77295 0.78468 1.20226 1.21238 1.18538 0.88429 0.85931 0.86150 0.89295 0.85773 0.90444 0.91576 0.86098 0.85841 0.89202 0.89576 0.92565 0.92190 0.95613 0.89516 0.91685 0.92086 0.94901 0.95519 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 14.32 67.79 0.97 -1.91 16 2 C -0.19 -4.13 9.85 25.66 0.25 -3.88 16 3 C 0.14 3.52 6.40 85.63 0.55 4.07 16 4 N -0.46 -15.86 2.79 -518.90 -1.45 -17.31 16 5 C 0.18 6.05 6.58 137.64 0.91 6.96 16 6 C 0.01 0.27 2.60 -11.40 -0.03 0.24 16 7 H 0.11 1.93 6.86 -2.39 -0.02 1.91 16 8 C -0.08 -1.53 5.42 29.66 0.16 -1.37 16 9 C -0.16 -2.47 9.80 27.04 0.27 -2.20 16 10 C -0.15 -2.15 9.80 27.04 0.27 -1.88 16 11 C -0.09 -1.27 6.12 29.66 0.18 -1.09 16 12 C -0.11 -2.34 5.29 30.73 0.16 -2.18 16 13 N -0.32 -13.36 12.12 -49.54 -0.60 -13.96 16 14 N -0.35 -16.10 9.85 -58.00 -0.57 -16.67 16 15 C 0.36 15.20 6.20 260.11 1.61 16.82 16 16 N -0.46 -20.44 4.77 -711.00 -3.39 -23.84 16 17 C 0.05 2.23 8.69 127.69 1.11 3.34 16 18 C 0.24 12.37 2.32 44.16 0.10 12.47 16 19 H 0.00 -0.16 8.11 -2.39 -0.02 -0.18 16 20 C -0.15 -8.29 8.19 71.98 0.59 -7.70 16 21 C -0.52 -27.53 7.89 25.60 0.20 -27.33 16 22 H 0.07 3.68 6.76 -2.91 -0.02 3.66 16 23 C 0.01 0.73 5.30 84.65 0.45 1.18 16 24 N -0.92 -53.20 11.32 21.45 0.24 -52.96 16 25 Si 0.97 42.45 29.54 68.60 2.03 44.47 16 26 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 27 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 28 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 29 H 0.10 2.18 7.84 -2.91 -0.02 2.16 16 30 H 0.12 1.95 8.06 -2.91 -0.02 1.93 16 31 H 0.12 2.36 8.06 -2.91 -0.02 2.33 16 32 H 0.09 2.66 7.79 -2.39 -0.02 2.64 16 33 H 0.12 2.37 7.07 -2.39 -0.02 2.36 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.07 1.65 8.05 -2.39 -0.02 1.63 16 36 H 0.12 1.50 8.06 -2.91 -0.02 1.47 16 37 H 0.12 1.25 8.06 -2.91 -0.02 1.23 16 38 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.06 1.52 8.12 -2.39 -0.02 1.50 16 42 H 0.03 1.11 6.35 -2.38 -0.02 1.09 16 43 H 0.09 3.49 6.43 -2.39 -0.02 3.48 16 44 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.06 3.56 6.07 -2.39 -0.01 3.55 16 46 H 0.03 1.70 6.46 -2.38 -0.02 1.68 16 47 H 0.03 1.42 5.97 -2.39 -0.01 1.41 16 48 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -68.14 379.62 4.93 -63.20 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.93 Total: 21.53 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 7.75 Total: -4.47 kcal Atomic # 7 Polarization: -118.96 SS G_CDS: -5.77 Total: -124.73 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -68.14 4.93 -63.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356124140.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.724 kcal (2) G-P(sol) polarization free energy of solvation -68.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds