Wall clock time and date at job start Tue Mar 31 2020 11:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47382 * 2 1 4 4 C 1.36742 * 127.13775 * 270.14983 * 3 2 1 5 5 C 1.50697 * 126.34402 * 359.96473 * 4 3 2 6 6 C 1.52999 * 109.47361 * 270.28562 * 5 4 3 7 7 C 1.50697 * 109.47361 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00268 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99926 * 180.02562 * 7 6 5 10 10 N 1.31510 * 119.99999 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99706 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47215 * 90.00080 * 11 9 7 13 13 H 1.48504 * 109.46727 * 209.99507 * 11 9 7 14 14 H 1.48495 * 109.47452 * 329.99440 * 11 9 7 15 15 N 1.30289 * 107.30606 * 180.22565 * 4 3 2 16 16 N 1.28528 * 110.05673 * 359.77248 * 15 4 3 17 17 C 1.31226 * 109.85655 * 0.02562 * 16 15 4 18 18 N 1.38585 * 126.47103 * 179.97438 * 17 16 15 19 19 C 1.49128 * 111.50082 * 238.45158 * 18 17 16 20 20 C 1.56291 * 103.64519 * 146.69499 * 19 18 17 21 21 H 1.09002 * 113.66363 * 199.82869 * 20 19 18 22 22 C 1.53147 * 105.28701 * 75.38747 * 20 19 18 23 23 C 1.49162 * 112.69096 * 211.07015 * 22 20 19 24 24 C 1.29205 * 124.65596 * 17.75135 * 23 22 20 25 25 C 1.49665 * 123.45455 * 358.21619 * 24 23 22 26 26 C 1.48253 * 113.11959 * 12.21923 * 25 24 23 27 27 H 1.09000 * 108.05922 * 200.56630 * 26 25 24 28 28 C 1.48065 * 110.99715 * 0.02562 * 18 17 16 29 29 H 1.08999 * 109.47311 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46921 * 300.00337 * 1 2 3 31 31 H 1.09007 * 109.46675 * 59.99826 * 1 2 3 32 32 H 1.09002 * 109.46921 * 239.99663 * 2 1 3 33 33 H 1.09000 * 109.46362 * 119.99988 * 2 1 3 34 34 H 1.09004 * 109.47268 * 30.28552 * 5 4 3 35 35 H 1.09003 * 109.47488 * 150.28625 * 5 4 3 36 36 H 1.08997 * 109.46762 * 300.00598 * 6 5 4 37 37 H 1.09004 * 109.46892 * 60.00157 * 6 5 4 38 38 H 0.96999 * 119.99919 * 180.02562 * 10 9 7 39 39 H 1.08998 * 109.97093 * 28.54243 * 19 18 17 40 40 H 1.09003 * 111.46438 * 265.55995 * 19 18 17 41 41 H 1.08998 * 108.84460 * 331.90102 * 22 20 19 42 42 H 1.09006 * 108.84250 * 90.24432 * 22 20 19 43 43 H 1.08004 * 117.67438 * 197.77041 * 23 22 20 44 44 H 1.08004 * 118.27521 * 178.23751 * 24 23 22 45 45 H 1.08999 * 108.77179 * 133.85272 * 25 24 23 46 46 H 1.08997 * 108.77137 * 252.14648 * 25 24 23 47 47 H 1.09000 * 110.13581 * 118.93023 * 28 18 17 48 48 H 1.08997 * 110.14199 * 357.21729 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2909 2.1604 -1.0901 5 6 2.1452 1.7575 -2.5349 6 6 3.4538 1.1344 -3.0251 7 6 3.3079 0.7309 -4.4697 8 1 2.3753 0.9021 -4.9867 9 6 4.3651 0.1431 -5.1314 10 7 5.5009 -0.0650 -4.5020 11 14 4.1844 -0.3564 -6.9222 12 1 4.5898 0.7746 -7.7949 13 1 5.0512 -1.5302 -7.1985 14 1 2.7688 -0.7109 -7.1969 15 7 2.7052 3.3139 -0.6481 16 7 2.7085 3.3181 0.6372 17 6 2.2934 2.1577 1.0878 18 7 2.1636 1.7888 2.4173 19 6 2.9903 0.5889 2.7349 20 6 3.4308 0.8260 4.2156 21 1 4.3025 0.2423 4.5115 22 6 2.1887 0.5254 5.0594 23 6 2.1292 1.3411 6.3068 24 6 2.8094 2.4203 6.5120 25 6 3.7873 2.9792 5.5265 26 6 3.6914 2.3471 4.1889 27 1 4.6302 2.5234 3.6638 28 6 2.5613 2.8960 3.3163 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 1.3387 1.0304 -2.6298 35 1 1.9141 2.6370 -3.1359 36 1 4.2603 1.8614 -2.9301 37 1 3.6849 0.2548 -2.4241 38 1 6.2448 -0.4782 -4.9677 39 1 3.8601 0.5519 2.0790 40 1 2.4089 -0.3293 2.6519 41 1 1.2998 0.7295 4.4627 42 1 2.1938 -0.5307 5.3295 43 1 1.4710 1.0057 7.0946 44 1 2.6649 2.9467 7.4440 45 1 3.6154 4.0513 5.4313 46 1 4.7969 2.8185 5.9046 47 1 1.7181 3.1952 3.9389 48 1 2.9168 3.7447 2.7320 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356489333.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:17 Heat of formation + Delta-G solvation = 94.154179 kcal Electronic energy + Delta-G solvation = -27108.283748 eV Core-core repulsion = 23585.458272 eV Total energy + Delta-G solvation = -3522.825475 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.62020 -40.48052 -36.27720 -35.50694 -33.96211 -32.16909 -32.02933 -31.16689 -30.19232 -28.17355 -27.61615 -25.37074 -24.54154 -23.82535 -22.21393 -21.78588 -21.26974 -20.33776 -19.81510 -17.78117 -16.79978 -16.50780 -16.29713 -16.04101 -15.81901 -14.95046 -14.65905 -14.52218 -14.16121 -13.99087 -13.60061 -13.46042 -13.14709 -13.03588 -13.00333 -12.70913 -12.59245 -12.26467 -12.24773 -12.07131 -11.76787 -11.35774 -11.27849 -11.05125 -10.99770 -10.90659 -10.69173 -10.56279 -10.30849 -10.25313 -10.03690 -9.88947 -9.71524 -9.32156 -9.22036 -9.11841 -8.42149 -7.83931 -6.06619 -4.10654 2.08628 2.16171 2.57787 3.29002 3.29320 3.35639 3.38215 3.76842 4.10282 4.23870 4.39346 4.40301 4.67315 4.86750 4.91109 4.99944 5.00266 5.04494 5.09545 5.16043 5.24006 5.26681 5.29633 5.29765 5.38528 5.44885 5.55020 5.60505 5.62175 5.68096 5.69879 5.77272 5.86349 5.97134 6.00777 6.04846 6.06836 6.30825 6.38132 6.45793 6.49707 6.61893 6.71219 6.73686 6.97301 7.48757 7.54474 7.68758 7.91077 8.28854 8.95557 9.26514 9.54016 11.04498 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.023568 B = 0.002882 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.766501 B = 9712.832862 C = 9815.534561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.102 3.898 3 N -0.477 5.477 4 C 0.212 3.788 5 C -0.031 4.031 6 C 0.033 3.967 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.059 3.941 10 N -0.893 5.893 11 Si 0.894 3.106 12 H -0.279 1.279 13 H -0.287 1.287 14 H -0.273 1.273 15 N -0.296 5.296 16 N -0.328 5.328 17 C 0.335 3.665 18 N -0.445 5.445 19 C 0.042 3.958 20 C -0.086 4.086 21 H 0.099 0.901 22 C -0.086 4.086 23 C -0.150 4.150 24 C -0.156 4.156 25 C -0.075 4.075 26 C -0.105 4.105 27 H 0.072 0.928 28 C 0.059 3.941 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.025 0.975 37 H 0.013 0.987 38 H 0.262 0.738 39 H 0.057 0.943 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.100 0.900 44 H 0.103 0.897 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.085 0.915 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.728 -1.336 21.950 23.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.021 4.021 3 N -0.172 5.172 4 C -0.056 4.056 5 C -0.071 4.071 6 C -0.006 4.006 7 C -0.562 4.562 8 H 0.077 0.923 9 C -0.143 4.143 10 N -0.531 5.531 11 Si 0.722 3.278 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.198 1.198 15 N -0.134 5.134 16 N -0.173 5.173 17 C -0.022 4.022 18 N -0.169 5.169 19 C -0.085 4.085 20 C -0.105 4.105 21 H 0.117 0.883 22 C -0.123 4.123 23 C -0.168 4.168 24 C -0.174 4.174 25 C -0.112 4.112 26 C -0.124 4.124 27 H 0.090 0.910 28 C -0.067 4.067 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.121 0.879 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.043 0.957 37 H 0.031 0.969 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.110 0.890 41 H 0.106 0.894 42 H 0.087 0.913 43 H 0.118 0.882 44 H 0.122 0.878 45 H 0.096 0.904 46 H 0.092 0.908 47 H 0.103 0.897 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.573 -0.106 22.001 23.268 hybrid contribution 0.243 -1.563 -0.997 1.870 sum -7.330 -1.669 21.004 22.309 Atomic orbital electron populations 1.22105 0.93978 1.02973 1.03199 1.21934 0.95820 0.79317 1.05028 1.46228 1.51568 1.13715 1.05706 1.25504 1.00036 0.87680 0.92387 1.20420 1.02398 1.01499 0.82743 1.19060 0.90170 0.95487 0.95840 1.21148 0.98942 1.40041 0.96051 0.92290 1.25011 0.95215 0.95749 0.98285 1.69970 1.03031 1.43390 1.36747 0.86558 0.78036 0.78155 0.85053 1.20512 1.21248 1.19798 1.73973 1.19164 1.18272 1.01955 1.74361 1.21125 1.17659 1.04136 1.22567 1.02306 0.90026 0.87287 1.60456 1.52281 1.06965 0.97191 1.23812 0.95661 0.92587 0.96400 1.22454 0.98383 0.95949 0.93743 0.88314 1.20338 0.98352 0.99126 0.94507 1.21740 1.00100 0.96830 0.98146 1.21850 0.98589 0.97440 0.99553 1.19247 0.98898 1.00339 0.92744 1.20987 0.99816 0.94988 0.96623 0.90993 1.22767 0.97532 0.92944 0.93483 0.90588 0.91809 0.91696 0.87864 0.89254 0.91288 0.89385 0.95690 0.96906 0.92880 0.92452 0.88958 0.89360 0.91300 0.88225 0.87847 0.90434 0.90777 0.89685 0.88621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 10.24 37.16 0.38 -1.43 16 2 C 0.10 1.34 6.50 -4.04 -0.03 1.31 16 3 N -0.48 -8.12 2.81 -114.08 -0.32 -8.44 16 4 C 0.21 4.29 7.32 -154.02 -1.13 3.16 16 5 C -0.03 -0.63 5.36 -27.88 -0.15 -0.78 16 6 C 0.03 0.83 4.95 -27.88 -0.14 0.69 16 7 C -0.52 -14.29 9.11 -34.44 -0.31 -14.61 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 10 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 11 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 15 N -0.30 -6.56 12.18 32.99 0.40 -6.16 16 16 N -0.33 -6.64 10.48 30.32 0.32 -6.32 16 17 C 0.34 5.72 7.05 -318.86 -2.25 3.47 16 18 N -0.44 -5.84 4.61 -169.69 -0.78 -6.62 16 19 C 0.04 0.46 4.70 -0.82 0.00 0.45 16 20 C -0.09 -0.77 3.99 -88.07 -0.35 -1.12 16 21 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 22 C -0.09 -0.69 4.95 -28.54 -0.14 -0.83 16 23 C -0.15 -1.17 9.77 -36.27 -0.35 -1.53 16 24 C -0.16 -1.21 9.88 -36.03 -0.36 -1.57 16 25 C -0.08 -0.60 5.44 -30.69 -0.17 -0.77 16 26 C -0.10 -1.03 2.44 -92.24 -0.22 -1.25 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 28 C 0.06 0.72 5.85 -3.20 -0.02 0.70 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.10 1.45 7.90 -51.93 -0.41 1.04 16 33 H 0.09 0.98 5.41 -51.93 -0.28 0.70 16 34 H 0.07 1.27 7.95 -51.93 -0.41 0.86 16 35 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 36 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.06 0.74 7.82 -51.93 -0.41 0.34 16 40 H 0.09 0.85 6.58 -51.93 -0.34 0.51 16 41 H 0.09 0.80 7.00 -51.93 -0.36 0.44 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.10 0.67 8.06 -52.48 -0.42 0.25 16 44 H 0.10 0.68 8.06 -52.48 -0.42 0.26 16 45 H 0.08 0.60 8.06 -51.93 -0.42 0.18 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.08 0.96 8.04 -51.93 -0.42 0.54 16 48 H 0.10 1.38 6.35 -51.93 -0.33 1.05 16 LS Contribution 375.92 15.07 5.67 5.67 Total: -1.00 -32.39 375.92 -12.34 -44.72 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -8.00 Total: -0.73 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -5.34 Total: -12.55 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: 0.35 Total: -53.25 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.39 -12.34 -44.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356489333.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.878 kcal (2) G-P(sol) polarization free energy of solvation -32.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds