Wall clock time and date at job start Tue Mar 31 2020 11:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47382 * 2 1 4 4 C 1.36742 * 127.13775 * 270.14983 * 3 2 1 5 5 C 1.50697 * 126.34402 * 359.96473 * 4 3 2 6 6 C 1.52999 * 109.47361 * 270.28562 * 5 4 3 7 7 C 1.50697 * 109.47361 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00268 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99926 * 180.02562 * 7 6 5 10 10 N 1.31510 * 119.99999 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99706 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47215 * 90.00080 * 11 9 7 13 13 H 1.48504 * 109.46727 * 209.99507 * 11 9 7 14 14 H 1.48495 * 109.47452 * 329.99440 * 11 9 7 15 15 N 1.30289 * 107.30606 * 180.22565 * 4 3 2 16 16 N 1.28528 * 110.05673 * 359.77248 * 15 4 3 17 17 C 1.31226 * 109.85655 * 0.02562 * 16 15 4 18 18 N 1.38585 * 126.47103 * 179.97438 * 17 16 15 19 19 C 1.49128 * 111.50082 * 238.45158 * 18 17 16 20 20 C 1.56291 * 103.64519 * 146.69499 * 19 18 17 21 21 H 1.09002 * 113.66363 * 199.82869 * 20 19 18 22 22 C 1.53147 * 105.28701 * 75.38747 * 20 19 18 23 23 C 1.49162 * 112.69096 * 211.07015 * 22 20 19 24 24 C 1.29205 * 124.65596 * 17.75135 * 23 22 20 25 25 C 1.49665 * 123.45455 * 358.21619 * 24 23 22 26 26 C 1.48253 * 113.11959 * 12.21923 * 25 24 23 27 27 H 1.09000 * 108.05922 * 200.56630 * 26 25 24 28 28 C 1.48065 * 110.99715 * 0.02562 * 18 17 16 29 29 H 1.08999 * 109.47311 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46921 * 300.00337 * 1 2 3 31 31 H 1.09007 * 109.46675 * 59.99826 * 1 2 3 32 32 H 1.09002 * 109.46921 * 239.99663 * 2 1 3 33 33 H 1.09000 * 109.46362 * 119.99988 * 2 1 3 34 34 H 1.09004 * 109.47268 * 30.28552 * 5 4 3 35 35 H 1.09003 * 109.47488 * 150.28625 * 5 4 3 36 36 H 1.08997 * 109.46762 * 300.00598 * 6 5 4 37 37 H 1.09004 * 109.46892 * 60.00157 * 6 5 4 38 38 H 0.96999 * 119.99919 * 180.02562 * 10 9 7 39 39 H 1.08998 * 109.97093 * 28.54243 * 19 18 17 40 40 H 1.09003 * 111.46438 * 265.55995 * 19 18 17 41 41 H 1.08998 * 108.84460 * 331.90102 * 22 20 19 42 42 H 1.09006 * 108.84250 * 90.24432 * 22 20 19 43 43 H 1.08004 * 117.67438 * 197.77041 * 23 22 20 44 44 H 1.08004 * 118.27521 * 178.23751 * 24 23 22 45 45 H 1.08999 * 108.77179 * 133.85272 * 25 24 23 46 46 H 1.08997 * 108.77137 * 252.14648 * 25 24 23 47 47 H 1.09000 * 110.13581 * 118.93023 * 28 18 17 48 48 H 1.08997 * 110.14199 * 357.21729 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2909 2.1604 -1.0901 5 6 2.1452 1.7575 -2.5349 6 6 3.4538 1.1344 -3.0251 7 6 3.3079 0.7309 -4.4697 8 1 2.3753 0.9021 -4.9867 9 6 4.3651 0.1431 -5.1314 10 7 5.5009 -0.0650 -4.5020 11 14 4.1844 -0.3564 -6.9222 12 1 4.5898 0.7746 -7.7949 13 1 5.0512 -1.5302 -7.1985 14 1 2.7688 -0.7109 -7.1969 15 7 2.7052 3.3139 -0.6481 16 7 2.7085 3.3181 0.6372 17 6 2.2934 2.1577 1.0878 18 7 2.1636 1.7888 2.4173 19 6 2.9903 0.5889 2.7349 20 6 3.4308 0.8260 4.2156 21 1 4.3025 0.2423 4.5115 22 6 2.1887 0.5254 5.0594 23 6 2.1292 1.3411 6.3068 24 6 2.8094 2.4203 6.5120 25 6 3.7873 2.9792 5.5265 26 6 3.6914 2.3471 4.1889 27 1 4.6302 2.5234 3.6638 28 6 2.5613 2.8960 3.3163 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 1.3387 1.0304 -2.6298 35 1 1.9141 2.6370 -3.1359 36 1 4.2603 1.8614 -2.9301 37 1 3.6849 0.2548 -2.4241 38 1 6.2448 -0.4782 -4.9677 39 1 3.8601 0.5519 2.0790 40 1 2.4089 -0.3293 2.6519 41 1 1.2998 0.7295 4.4627 42 1 2.1938 -0.5307 5.3295 43 1 1.4710 1.0057 7.0946 44 1 2.6649 2.9467 7.4440 45 1 3.6154 4.0513 5.4313 46 1 4.7969 2.8185 5.9046 47 1 1.7181 3.1952 3.9389 48 1 2.9168 3.7447 2.7320 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356489333.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:16 Heat of formation + Delta-G solvation = 78.709177 kcal Electronic energy + Delta-G solvation = -27108.953493 eV Core-core repulsion = 23585.458272 eV Total energy + Delta-G solvation = -3523.495221 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.05224 -41.36518 -37.22701 -36.84820 -35.79348 -33.77940 -32.83555 -32.33746 -31.39313 -29.71919 -28.51608 -27.16711 -25.56366 -24.86498 -23.67553 -23.06372 -22.18048 -21.56828 -21.28332 -18.76600 -18.58473 -17.63010 -17.38223 -17.13278 -17.05328 -16.48713 -15.99413 -15.56239 -15.26387 -14.98848 -14.80046 -14.72747 -14.40143 -14.31623 -14.06677 -13.94635 -13.49506 -13.43515 -13.37501 -13.14521 -12.86909 -12.80482 -12.67944 -12.53331 -12.36572 -12.17411 -12.07796 -11.90257 -11.75484 -11.46554 -11.34345 -11.30180 -11.11650 -10.98315 -10.67623 -10.57844 -9.77288 -9.22902 -8.21171 -6.33594 0.76220 1.26740 1.42787 1.44597 1.51782 1.55149 1.77753 2.41556 2.61754 3.13104 3.24110 3.40964 3.49929 3.59326 3.65669 3.96925 4.02207 4.08653 4.09580 4.21618 4.28163 4.34756 4.37965 4.46120 4.48880 4.60423 4.63108 4.64205 4.67932 4.68646 4.77293 4.86823 4.92808 4.96037 4.98561 5.08514 5.12627 5.17424 5.19317 5.29862 5.34697 5.42602 5.45818 5.56821 5.59632 5.77325 5.87538 6.13810 6.15828 6.19632 6.82096 7.36510 7.75644 8.90935 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.023568 B = 0.002882 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.766501 B = 9712.832862 C = 9815.534561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.093 3.907 3 N -0.473 5.473 4 C 0.195 3.805 5 C -0.014 4.014 6 C 0.045 3.955 7 C -0.539 4.539 8 H 0.072 0.928 9 C 0.001 3.999 10 N -0.934 5.934 11 Si 0.968 3.032 12 H -0.277 1.277 13 H -0.284 1.284 14 H -0.256 1.256 15 N -0.333 5.333 16 N -0.364 5.364 17 C 0.351 3.649 18 N -0.436 5.436 19 C 0.040 3.960 20 C -0.077 4.077 21 H 0.114 0.886 22 C -0.083 4.083 23 C -0.155 4.155 24 C -0.161 4.161 25 C -0.074 4.074 26 C -0.099 4.099 27 H 0.054 0.946 28 C 0.059 3.941 29 H 0.107 0.893 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.094 0.906 35 H 0.086 0.914 36 H -0.020 1.020 37 H -0.005 1.005 38 H 0.263 0.737 39 H 0.034 0.966 40 H 0.117 0.883 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.096 0.904 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.417 -3.206 23.181 25.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.028 4.028 3 N -0.168 5.168 4 C -0.074 4.074 5 C -0.053 4.053 6 C 0.007 3.993 7 C -0.577 4.577 8 H 0.090 0.910 9 C -0.197 4.197 10 N -0.574 5.574 11 Si 0.792 3.208 12 H -0.202 1.202 13 H -0.209 1.209 14 H -0.180 1.180 15 N -0.171 5.171 16 N -0.208 5.208 17 C -0.006 4.006 18 N -0.161 5.161 19 C -0.086 4.086 20 C -0.096 4.096 21 H 0.132 0.868 22 C -0.120 4.120 23 C -0.173 4.173 24 C -0.179 4.179 25 C -0.111 4.111 26 C -0.118 4.118 27 H 0.073 0.927 28 C -0.067 4.067 29 H 0.126 0.874 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.112 0.888 33 H 0.132 0.868 34 H 0.113 0.887 35 H 0.104 0.896 36 H -0.001 1.001 37 H 0.013 0.987 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.135 0.865 41 H 0.098 0.902 42 H 0.105 0.895 43 H 0.132 0.868 44 H 0.135 0.865 45 H 0.097 0.903 46 H 0.102 0.898 47 H 0.114 0.886 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.285 -1.988 23.250 25.114 hybrid contribution 0.785 -0.982 -1.258 1.778 sum -8.500 -2.970 21.992 23.764 Atomic orbital electron populations 1.22065 0.91854 1.04815 1.02549 1.22299 0.97518 0.77238 1.05769 1.46394 1.50982 1.14747 1.04675 1.25263 1.01138 0.88119 0.92876 1.20117 1.00430 1.01618 0.83159 1.18815 0.91249 0.93710 0.95523 1.21588 0.99524 1.39666 0.96899 0.90978 1.25991 0.94748 0.95677 1.03245 1.70119 1.04020 1.44421 1.38884 0.85401 0.78834 0.77676 0.78873 1.20225 1.20920 1.17968 1.73859 1.20167 1.19858 1.03228 1.74290 1.23290 1.19748 1.03457 1.22956 0.99842 0.89134 0.88704 1.60645 1.52366 1.07999 0.95068 1.23964 0.94887 0.92308 0.97418 1.22494 0.99627 0.95109 0.92348 0.86761 1.20312 0.97014 1.00376 0.94283 1.21873 1.00354 0.96747 0.98345 1.21955 0.98447 0.97617 0.99896 1.19238 0.99809 1.00314 0.91784 1.20955 0.97853 0.95972 0.97067 0.92743 1.22785 0.98740 0.91950 0.93267 0.87438 0.91838 0.92902 0.88830 0.86842 0.88736 0.89582 1.00110 0.98701 0.92783 0.94779 0.86527 0.90232 0.89460 0.86830 0.86516 0.90316 0.89850 0.88608 0.91321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 10.24 71.98 0.74 -2.33 16 2 C 0.09 2.32 6.50 86.38 0.56 2.88 16 3 N -0.47 -16.23 2.81 -514.85 -1.45 -17.67 16 4 C 0.20 8.18 7.32 137.64 1.01 9.19 16 5 C -0.01 -0.57 5.36 29.85 0.16 -0.41 16 6 C 0.05 2.40 4.95 29.85 0.15 2.54 16 7 C -0.54 -29.70 9.11 25.60 0.23 -29.47 16 8 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 9 C 0.00 0.08 5.46 84.66 0.46 0.54 16 10 N -0.93 -56.65 13.29 21.45 0.28 -56.37 16 11 Si 0.97 43.26 29.54 68.60 2.03 45.28 16 12 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 13 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 14 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 15 N -0.33 -15.49 12.18 -49.54 -0.60 -16.09 16 16 N -0.36 -15.36 10.48 -58.00 -0.61 -15.96 16 17 C 0.35 12.17 7.05 260.11 1.83 14.01 16 18 N -0.44 -11.19 4.61 -690.77 -3.18 -14.37 16 19 C 0.04 0.82 4.70 87.01 0.41 1.22 16 20 C -0.08 -1.21 3.99 -9.14 -0.04 -1.25 16 21 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 22 C -0.08 -1.08 4.95 29.42 0.15 -0.93 16 23 C -0.16 -1.96 9.77 26.99 0.26 -1.70 16 24 C -0.16 -2.10 9.88 27.14 0.27 -1.83 16 25 C -0.07 -1.09 5.44 28.03 0.15 -0.94 16 26 C -0.10 -1.87 2.44 -11.84 -0.03 -1.90 16 27 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 28 C 0.06 1.41 5.85 86.07 0.50 1.92 16 29 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.09 2.56 7.90 -2.39 -0.02 2.54 16 33 H 0.11 2.25 5.41 -2.39 -0.01 2.23 16 34 H 0.09 3.45 7.95 -2.39 -0.02 3.43 16 35 H 0.09 3.63 8.14 -2.39 -0.02 3.61 16 36 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 16 37 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 38 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 39 H 0.03 0.87 7.82 -2.39 -0.02 0.85 16 40 H 0.12 1.81 6.58 -2.39 -0.02 1.79 16 41 H 0.08 1.21 7.00 -2.39 -0.02 1.19 16 42 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 43 H 0.11 1.15 8.06 -2.91 -0.02 1.12 16 44 H 0.12 1.22 8.06 -2.91 -0.02 1.19 16 45 H 0.08 1.14 8.06 -2.39 -0.02 1.12 16 46 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.10 2.09 8.04 -2.39 -0.02 2.07 16 48 H 0.07 2.07 6.35 -2.39 -0.02 2.05 16 Total: -1.00 -72.93 375.92 4.22 -68.70 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.93 Total: 14.92 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: 6.82 Total: -8.44 kcal Atomic # 7 Polarization: -114.91 SS G_CDS: -5.55 Total: -120.47 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -72.93 4.22 -68.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356489333.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.413 kcal (2) G-P(sol) polarization free energy of solvation -72.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds