Wall clock time and date at job start Tue Mar 31 2020 11:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47210 * 179.97438 * 2 1 4 4 C 1.53114 * 109.52193 * 288.36643 * 3 2 1 5 5 C 1.53035 * 109.28110 * 177.55969 * 4 3 2 6 6 N 1.46850 * 109.52091 * 300.82625 * 5 4 3 7 7 C 1.38585 * 110.99636 * 185.83589 * 6 5 4 8 8 N 1.31215 * 126.47521 * 297.04123 * 7 6 5 9 9 N 1.28522 * 109.86413 * 180.02562 * 8 7 6 10 10 C 1.30293 * 110.05248 * 359.71964 * 9 8 7 11 11 C 1.50703 * 126.35116 * 180.31378 * 10 9 8 12 12 H 1.09003 * 109.47118 * 180.14729 * 11 10 9 13 13 C 1.52995 * 109.47004 * 60.15205 * 11 10 9 14 14 C 1.52995 * 109.46949 * 300.15206 * 11 10 9 15 15 C 1.50709 * 109.47027 * 184.99933 * 14 11 10 16 16 H 1.07995 * 119.99829 * 359.97438 * 15 14 11 17 17 C 1.37881 * 119.99851 * 179.97438 * 15 14 11 18 18 N 1.31510 * 119.99358 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99860 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47101 * 90.00216 * 19 17 15 21 21 H 1.48500 * 109.46702 * 209.99640 * 19 17 15 22 22 H 1.48502 * 109.47398 * 329.99699 * 19 17 15 23 23 N 1.36452 * 126.47352 * 117.08343 * 7 6 5 24 24 C 1.46504 * 127.13311 * 359.96533 * 23 7 6 25 25 C 1.53002 * 109.47276 * 93.44207 * 24 23 7 26 26 C 1.46846 * 111.20170 * 61.74015 * 6 5 4 27 27 C 1.53036 * 109.52025 * 298.25513 * 26 6 5 28 28 H 4.44834 * 5.62965 * 180.02562 * 4 1 2 29 29 H 1.08996 * 109.57165 * 168.21055 * 3 2 1 30 30 H 1.09007 * 109.50567 * 57.62197 * 4 3 2 31 31 H 1.08997 * 109.50467 * 297.50631 * 4 3 2 32 32 H 1.08991 * 109.46603 * 180.80719 * 5 4 3 33 33 H 1.09004 * 109.45732 * 60.83682 * 5 4 3 34 34 H 1.09001 * 109.47282 * 299.99899 * 13 11 10 35 35 H 1.09006 * 109.47419 * 60.00255 * 13 11 10 36 36 H 1.09008 * 109.47463 * 180.02562 * 13 11 10 37 37 H 1.09004 * 109.47195 * 304.99872 * 14 11 10 38 38 H 1.08997 * 109.47460 * 64.99708 * 14 11 10 39 39 H 0.97009 * 119.99406 * 180.02562 * 18 17 15 40 40 H 1.08997 * 109.47240 * 333.43516 * 24 23 7 41 41 H 1.09001 * 109.46904 * 213.43867 * 24 23 7 42 42 H 1.08999 * 109.47293 * 57.33867 * 25 24 23 43 43 H 1.09000 * 109.47177 * 297.34262 * 25 24 23 44 44 H 1.08999 * 109.47293 * 177.33977 * 25 24 23 45 45 H 1.08999 * 109.46501 * 58.26851 * 26 6 5 46 46 H 1.08995 * 109.46449 * 178.24249 * 26 6 5 47 47 H 1.08997 * 109.50587 * 299.23970 * 27 26 6 48 48 H 1.09003 * 109.50233 * 179.12092 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1580 -0.4538 1.3696 5 6 4.6871 -0.5096 1.3445 6 7 5.1269 -1.4459 0.3022 7 6 6.5014 -1.6196 0.3386 8 7 7.4101 -0.6964 0.1300 9 7 8.5845 -1.2065 0.2417 10 6 8.4955 -2.4736 0.5317 11 6 9.6454 -3.4228 0.7506 12 1 9.2584 -4.4168 0.9749 13 6 10.4968 -2.9307 1.9226 14 6 10.5045 -3.4833 -0.5139 15 6 11.5821 -4.5225 -0.3399 16 1 11.6477 -5.0833 0.5807 17 6 12.4840 -4.7572 -1.3560 18 7 13.4245 -5.6637 -1.2039 19 14 12.3708 -3.7865 -2.9480 20 1 13.1944 -2.5558 -2.8371 21 1 12.8724 -4.6182 -4.0714 22 1 10.9557 -3.4141 -3.2012 23 7 7.1653 -2.7833 0.5975 24 6 6.5751 -4.0916 0.8915 25 6 6.4458 -4.8955 -0.4039 26 6 4.6874 -1.0047 -1.0277 27 6 3.1583 -0.9638 -1.0734 28 1 -1.0499 -0.0002 0.0000 29 1 3.0108 1.0061 -0.2098 30 1 2.7614 -1.4436 1.5963 31 1 2.8320 0.2528 2.1328 32 1 5.0542 -0.8467 2.3138 33 1 5.0832 0.4833 1.1315 34 1 10.8838 -1.9367 1.6984 35 1 9.8847 -2.8876 2.8236 36 1 11.3288 -3.6169 2.0808 37 1 9.8786 -3.7480 -1.3661 38 1 10.9632 -2.5100 -0.6885 39 1 14.0594 -5.8285 -1.9186 40 1 5.5885 -3.9541 1.3339 41 1 7.2150 -4.6299 1.5908 42 1 7.4260 -4.9927 -0.8707 43 1 5.7685 -4.3804 -1.0851 44 1 6.0508 -5.8862 -0.1788 45 1 5.0835 -0.0095 -1.2296 46 1 5.0547 -1.7014 -1.7812 47 1 2.7617 -1.9615 -0.8852 48 1 2.8326 -0.6214 -2.0556 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356542933.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:31 Heat of formation + Delta-G solvation = 120.850013 kcal Electronic energy + Delta-G solvation = -26881.699241 eV Core-core repulsion = 23360.031384 eV Total energy + Delta-G solvation = -3521.667857 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.74166 -39.45456 -35.81266 -35.53525 -34.73475 -32.29421 -31.75667 -31.30475 -30.37299 -28.69861 -27.46426 -25.30173 -24.23397 -23.67154 -23.52762 -21.95329 -20.94254 -20.18454 -19.04925 -18.46614 -17.36620 -16.91775 -16.29969 -15.96237 -15.16695 -14.94606 -14.78195 -14.30024 -14.21949 -14.09524 -14.03986 -13.57363 -13.44904 -13.05291 -12.70936 -12.61456 -12.25697 -11.96924 -11.75643 -11.61182 -11.58513 -11.45549 -11.44281 -11.26175 -11.12778 -11.08663 -10.82334 -10.42501 -10.35542 -10.32169 -10.03146 -10.01672 -9.85238 -9.81011 -9.19483 -8.87118 -8.56550 -8.54597 -6.07008 -4.05452 1.97316 2.39201 2.49450 2.52977 3.17080 3.33476 3.40454 3.46640 3.60742 3.92328 4.42879 4.45376 4.53250 4.64758 4.74943 4.81539 4.83792 4.98485 5.05827 5.07421 5.17172 5.20770 5.27192 5.31201 5.38466 5.49276 5.52958 5.54145 5.61227 5.63682 5.72669 5.75978 5.76356 5.92750 6.00017 6.00922 6.10470 6.18799 6.30663 6.55014 6.61791 6.69258 6.76819 6.99070 7.18818 7.30210 7.35111 7.39280 7.73452 8.47184 8.95535 9.07437 9.55575 11.05564 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.023310 B = 0.002988 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.919242 B = 9369.317241 C = 9565.386154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.176 4.176 3 C 0.016 3.984 4 C -0.105 4.105 5 C 0.067 3.933 6 N -0.460 5.460 7 C 0.319 3.681 8 N -0.312 5.312 9 N -0.290 5.290 10 C 0.215 3.785 11 C 0.007 3.993 12 H 0.079 0.921 13 C -0.128 4.128 14 C 0.002 3.998 15 C -0.518 4.518 16 H 0.077 0.923 17 C 0.071 3.929 18 N -0.901 5.901 19 Si 0.875 3.125 20 H -0.275 1.275 21 H -0.288 1.288 22 H -0.267 1.267 23 N -0.465 5.465 24 C 0.110 3.890 25 C -0.169 4.169 26 C 0.068 3.932 27 C -0.105 4.105 28 H 0.216 0.784 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.034 0.966 36 H 0.080 0.920 37 H 0.013 0.987 38 H 0.027 0.973 39 H 0.263 0.737 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.077 0.923 45 H 0.056 0.944 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.634 6.817 4.699 25.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.176 4.176 3 C -0.002 4.002 4 C -0.142 4.142 5 C -0.060 4.060 6 N -0.186 5.186 7 C -0.037 4.037 8 N -0.157 5.157 9 N -0.129 5.129 10 C -0.052 4.052 11 C -0.014 4.014 12 H 0.097 0.903 13 C -0.186 4.186 14 C -0.036 4.036 15 C -0.556 4.556 16 H 0.095 0.905 17 C -0.130 4.130 18 N -0.539 5.539 19 Si 0.702 3.298 20 H -0.200 1.200 21 H -0.215 1.215 22 H -0.191 1.191 23 N -0.158 5.158 24 C -0.013 4.013 25 C -0.227 4.227 26 C -0.060 4.060 27 C -0.143 4.143 28 H 0.233 0.767 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.099 0.901 37 H 0.031 0.969 38 H 0.045 0.955 39 H 0.073 0.927 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.096 0.904 45 H 0.074 0.926 46 H 0.099 0.901 47 H 0.096 0.904 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -24.109 7.612 4.399 25.663 hybrid contribution -0.536 -0.145 -0.844 1.010 sum -24.645 7.467 3.555 25.996 Atomic orbital electron populations 1.24889 0.95891 1.01263 1.00768 1.22984 0.94121 1.00131 1.00350 1.18413 0.84506 1.00676 0.96576 1.21627 0.94038 1.02768 0.95813 1.22129 0.94926 0.94683 0.94255 1.58523 1.04173 1.49558 1.06342 1.22100 0.90928 0.84280 1.06400 1.74517 0.95721 1.25593 1.19820 1.74039 1.14714 1.05705 1.18448 1.25650 0.83862 0.95082 1.00613 1.19776 0.88728 0.93131 0.99752 0.90286 1.21699 0.99578 1.02636 0.94686 1.19581 0.94719 0.98244 0.91069 1.21015 1.11703 1.19765 1.03097 0.90537 1.24940 0.94939 0.94805 0.98366 1.69900 1.17248 1.33239 1.33560 0.86848 0.79041 0.80334 0.83544 1.20019 1.21453 1.19137 1.46494 1.06904 1.09779 1.52582 1.21799 0.99901 0.80501 0.99119 1.22138 1.03725 0.99971 0.96833 1.22128 0.94884 1.00662 0.88292 1.21631 0.94040 1.00159 0.98432 0.76715 0.88887 0.90447 0.90450 0.90232 0.92619 0.92107 0.94733 0.90111 0.96852 0.95515 0.92682 0.88504 0.88790 0.91003 0.92121 0.90434 0.92575 0.90150 0.90425 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.60 19.25 29.55 0.57 -1.03 16 2 C -0.18 -1.52 12.57 -37.12 -0.47 -1.99 16 3 C 0.02 0.13 2.63 -93.28 -0.25 -0.11 16 4 C -0.10 -0.81 5.33 -26.65 -0.14 -0.96 16 5 C 0.07 0.67 5.39 -3.83 -0.02 0.65 16 6 N -0.46 -5.40 4.67 -174.55 -0.82 -6.22 16 7 C 0.32 4.95 6.41 -318.87 -2.05 2.91 16 8 N -0.31 -5.88 12.19 30.31 0.37 -5.51 16 9 N -0.29 -6.02 12.18 32.99 0.40 -5.62 16 10 C 0.22 4.04 6.58 -154.02 -1.01 3.03 16 11 C 0.01 0.14 2.71 -91.77 -0.25 -0.11 16 12 H 0.08 1.43 7.02 -51.93 -0.36 1.06 16 13 C -0.13 -2.36 8.98 37.16 0.33 -2.02 16 14 C 0.00 0.05 3.50 -27.88 -0.10 -0.05 16 15 C -0.52 -14.05 8.96 -34.43 -0.31 -14.36 16 16 H 0.08 2.17 7.30 -52.49 -0.38 1.79 16 17 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 18 N -0.90 -27.09 13.96 55.43 0.77 -26.31 16 19 Si 0.87 21.96 27.47 -169.99 -4.67 17.29 16 20 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.27 -6.60 6.54 56.52 0.37 -6.23 16 23 N -0.46 -7.23 2.81 -114.08 -0.32 -7.55 16 24 C 0.11 1.28 6.55 -4.04 -0.03 1.25 16 25 C -0.17 -1.91 10.24 37.16 0.38 -1.53 16 26 C 0.07 0.72 5.37 -3.83 -0.02 0.69 16 27 C -0.10 -0.85 5.33 -26.65 -0.14 -1.00 16 28 H 0.22 0.93 7.80 -54.10 -0.42 0.51 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 1.56 6.95 -51.92 -0.36 1.20 16 37 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 38 H 0.03 0.67 7.57 -51.93 -0.39 0.27 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.09 1.01 7.37 -51.93 -0.38 0.63 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.08 0.92 8.10 -51.93 -0.42 0.49 16 47 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 390.86 15.07 5.89 5.89 Total: -1.00 -32.71 390.86 -10.14 -42.85 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -8.18 Total: -2.14 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -3.59 Total: -12.68 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: 0.41 Total: -51.21 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.71 -10.14 -42.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356542933.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.703 kcal (2) G-P(sol) polarization free energy of solvation -32.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds