Wall clock time and date at job start Tue Mar 31 2020 10:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00052 * 2 1 4 4 H 1.48501 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47338 * 299.99884 * 3 2 1 6 6 H 1.48499 * 109.47173 * 60.00102 * 3 2 1 7 7 C 1.37876 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00152 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99902 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47430 * 182.59209 * 9 7 2 11 11 C 1.46896 * 111.00010 * 64.45160 * 10 9 7 12 12 C 1.53004 * 109.46976 * 71.72157 * 11 10 9 13 13 C 1.52996 * 117.49881 * 244.67226 * 12 11 10 14 14 C 1.53002 * 117.49938 * 176.04709 * 12 11 10 15 15 C 1.38583 * 110.99811 * 300.50533 * 10 9 7 16 16 N 1.31215 * 126.47614 * 110.91406 * 15 10 9 17 17 N 1.28535 * 109.85793 * 180.25710 * 16 15 10 18 18 C 1.30295 * 110.05223 * 359.74800 * 17 16 15 19 19 C 1.50704 * 126.34082 * 180.02562 * 18 17 16 20 20 C 1.52997 * 109.46968 * 269.95577 * 19 18 17 21 21 C 1.53003 * 117.49580 * 243.75101 * 20 19 18 22 22 C 1.52997 * 117.49678 * 175.09236 * 20 19 18 23 23 N 1.36452 * 126.46886 * 290.74278 * 15 10 9 24 24 C 1.46500 * 127.13697 * 0.02562 * 23 15 10 25 25 C 1.53005 * 117.49449 * 243.79532 * 24 23 15 26 26 C 1.52994 * 60.03114 * 107.49955 * 25 24 23 27 27 H 0.97007 * 120.00044 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46978 * 62.58522 * 9 7 2 29 29 H 1.09007 * 109.46806 * 302.59155 * 9 7 2 30 30 H 1.08996 * 109.47560 * 191.71976 * 11 10 9 31 31 H 1.09003 * 109.47777 * 311.72019 * 11 10 9 32 32 H 1.09006 * 115.55091 * 30.37832 * 12 11 10 33 33 H 1.09006 * 117.50457 * 359.97438 * 13 12 11 34 34 H 1.09004 * 117.50139 * 145.01988 * 13 12 11 35 35 H 1.08994 * 117.49778 * 214.97512 * 14 12 11 36 36 H 1.08997 * 117.50056 * 0.02562 * 14 12 11 37 37 H 1.09001 * 109.47223 * 29.95925 * 19 18 17 38 38 H 1.09004 * 109.46305 * 149.95476 * 19 18 17 39 39 H 1.08998 * 115.54971 * 29.41425 * 20 19 18 40 40 H 1.08998 * 117.50376 * 359.97438 * 21 20 19 41 41 H 1.09002 * 117.49982 * 145.02186 * 21 20 19 42 42 H 1.09002 * 117.49942 * 214.97542 * 22 20 19 43 43 H 1.09001 * 117.50231 * 359.97438 * 22 20 19 44 44 H 1.09000 * 115.55500 * 98.12526 * 24 23 15 45 45 H 1.09002 * 117.49656 * 215.00136 * 25 24 23 46 46 H 1.08997 * 117.50179 * 359.97438 * 25 24 23 47 47 H 1.09005 * 117.50012 * 107.49958 * 26 25 24 48 48 H 1.09005 * 117.49977 * 252.51649 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2042 -3.6150 0.0638 11 6 2.9463 -3.6023 1.3315 12 6 2.0148 -4.0179 2.4719 13 6 1.7073 -2.9753 3.5485 14 6 2.6255 -4.1568 3.8679 15 6 3.0696 -3.5909 -1.0184 16 7 4.3536 -3.3229 -0.9845 17 7 4.8440 -3.3847 -2.1711 18 6 3.9107 -3.6985 -3.0244 19 6 4.0815 -3.8696 -4.5119 20 6 3.8456 -2.5287 -5.2098 21 6 2.6579 -2.4310 -6.1693 22 6 4.0859 -2.4663 -6.7195 23 7 2.7479 -3.8444 -2.3200 24 6 1.4288 -4.1941 -2.8530 25 6 1.2687 -5.5749 -3.4924 26 6 0.6400 -5.2870 -2.1276 27 1 -0.4850 0.8401 -0.0004 28 1 0.6599 -2.5774 -0.9119 29 1 0.5896 -2.5368 0.8662 30 1 3.7808 -4.3008 1.2711 31 1 3.3261 -2.5981 1.5202 32 1 1.2185 -4.7107 2.1997 33 1 2.1689 -1.9933 3.4447 34 1 0.7084 -2.9818 3.9848 35 1 2.2306 -4.9406 4.5142 36 1 3.6907 -3.9517 3.9739 37 1 5.0927 -4.2168 -4.7240 38 1 3.3617 -4.6016 -4.8783 39 1 4.0932 -1.6437 -4.6237 40 1 2.0447 -3.3221 -6.3037 41 1 2.1243 -1.4816 -6.2148 42 1 4.4912 -1.5400 -7.1268 43 1 4.4124 -3.3804 -7.2155 44 1 0.8637 -3.3696 -3.2877 45 1 0.5982 -5.6587 -4.3477 46 1 2.1447 -6.2229 -3.5168 47 1 -0.4440 -5.1815 -2.0849 48 1 1.1026 -5.7456 -1.2536 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001391045732.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:07 Heat of formation + Delta-G solvation = 163.130335 kcal Electronic energy + Delta-G solvation = -27815.623783 eV Core-core repulsion = 24295.789339 eV Total energy + Delta-G solvation = -3519.834445 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.27850 -37.90293 -37.48213 -37.19093 -35.46385 -32.59262 -32.24165 -30.78800 -27.68448 -26.92282 -25.33463 -23.46153 -22.63088 -22.34173 -22.29713 -21.82428 -21.04910 -20.25849 -19.61484 -19.22866 -17.06063 -16.55545 -16.02506 -15.55819 -15.44043 -15.32439 -14.54157 -14.40587 -14.08909 -13.79239 -13.51013 -13.19451 -13.01611 -12.84222 -12.49563 -11.83189 -11.59935 -11.53194 -11.45290 -11.30133 -11.23394 -11.03875 -11.00845 -10.83283 -10.79694 -10.63496 -10.50276 -10.30204 -10.15695 -9.98653 -9.93420 -9.81524 -9.52244 -9.42544 -9.25909 -8.70968 -8.52210 -7.35536 -6.13927 -4.19980 2.47012 2.83668 3.23279 3.31963 3.41127 3.58461 3.64915 3.81189 4.25809 4.37426 4.54802 4.63787 4.76938 4.77558 4.84800 4.92233 5.06192 5.19390 5.20572 5.31325 5.37355 5.45360 5.52946 5.55868 5.60963 5.64660 5.74635 5.83055 5.88300 5.91037 5.99794 6.02056 6.08845 6.10874 6.16961 6.20223 6.32270 6.38805 6.45728 6.48877 6.65829 6.70983 6.91925 7.07541 7.32942 7.35798 7.65308 7.82281 8.07348 8.21251 8.88882 9.46940 9.53526 10.92545 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.010503 B = 0.005600 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.385529 B = 4998.885652 C = 6250.679835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.071 3.929 3 Si 0.885 3.115 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.547 4.547 8 H 0.066 0.934 9 C 0.196 3.804 10 N -0.462 5.462 11 C 0.106 3.894 12 C -0.134 4.134 13 C -0.169 4.169 14 C -0.187 4.187 15 C 0.417 3.583 16 N -0.340 5.340 17 N -0.288 5.288 18 C 0.160 3.840 19 C 0.010 3.990 20 C -0.144 4.144 21 C -0.179 4.179 22 C -0.177 4.177 23 N -0.449 5.449 24 C 0.070 3.930 25 C -0.180 4.180 26 C -0.149 4.149 27 H 0.262 0.738 28 H 0.031 0.969 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.131 0.869 45 H 0.107 0.893 46 H 0.097 0.903 47 H 0.109 0.891 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.686 -10.653 -7.314 12.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.132 4.132 3 Si 0.713 3.287 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.586 4.586 8 H 0.084 0.916 9 C 0.072 3.928 10 N -0.186 5.186 11 C -0.021 4.021 12 C -0.152 4.152 13 C -0.206 4.206 14 C -0.224 4.224 15 C 0.061 3.939 16 N -0.185 5.185 17 N -0.127 5.127 18 C -0.108 4.108 19 C -0.029 4.029 20 C -0.164 4.164 21 C -0.216 4.216 22 C -0.214 4.214 23 N -0.143 5.143 24 C -0.035 4.035 25 C -0.218 4.218 26 C -0.187 4.187 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.126 0.874 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.148 0.852 45 H 0.125 0.875 46 H 0.116 0.884 47 H 0.127 0.873 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.603 -10.613 -6.744 12.677 hybrid contribution -0.691 1.614 -0.427 1.807 sum 0.912 -8.999 -7.171 11.543 Atomic orbital electron populations 1.69937 1.05906 1.26838 1.50149 1.24853 0.94707 0.99038 0.94642 0.86613 0.80660 0.83750 0.77660 1.19508 1.21036 1.20753 1.21794 0.93850 0.91355 1.51642 0.91596 1.19935 0.89757 0.84245 0.98846 1.59290 1.14823 1.45917 0.98534 1.21431 0.93554 1.01739 0.85373 1.22123 1.01639 1.02360 0.89127 1.22970 0.99932 0.94760 1.02976 1.22929 0.99215 1.01452 0.98822 1.22538 0.91030 0.96543 0.83807 1.74621 1.06001 1.23538 1.14302 1.73822 1.25802 1.17148 0.95959 1.24178 0.82357 1.07694 0.96527 1.19408 1.03286 0.95906 0.84338 1.22244 1.03342 0.99074 0.91707 1.23054 0.91101 1.03225 1.04233 1.22960 0.99472 1.03083 0.95919 1.45311 1.08246 1.54015 1.06776 1.21708 0.84225 0.93141 1.04400 1.23380 1.03610 0.96977 0.97809 1.23245 1.00096 0.99531 0.95800 0.92849 0.95143 0.92963 0.91410 0.91450 0.87837 0.88414 0.89444 0.89443 0.89198 0.88702 0.90295 0.87385 0.88803 0.88888 0.88870 0.88778 0.85166 0.87497 0.88443 0.87296 0.87202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.11 13.29 55.43 0.74 -24.37 16 2 C 0.07 1.95 5.46 -17.82 -0.10 1.85 16 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.55 -14.85 7.55 -34.44 -0.26 -15.11 16 8 H 0.07 1.92 6.55 -52.49 -0.34 1.57 16 9 C 0.20 4.72 4.92 -4.97 -0.02 4.70 16 10 N -0.46 -9.70 4.32 -175.88 -0.76 -10.46 16 11 C 0.11 2.13 4.59 -3.82 -0.02 2.11 16 12 C -0.13 -2.29 5.04 -90.62 -0.46 -2.74 16 13 C -0.17 -2.83 10.18 -26.73 -0.27 -3.10 16 14 C -0.19 -2.70 10.25 -26.73 -0.27 -2.98 16 15 C 0.42 9.05 5.61 -318.87 -1.79 7.26 16 16 N -0.34 -7.99 11.05 30.31 0.34 -7.65 16 17 N -0.29 -6.30 12.18 32.99 0.40 -5.90 16 18 C 0.16 2.94 7.27 -154.02 -1.12 1.82 16 19 C 0.01 0.14 5.87 -27.88 -0.16 -0.03 16 20 C -0.14 -1.91 5.72 -90.62 -0.52 -2.43 16 21 C -0.18 -2.02 10.18 -26.69 -0.27 -2.29 16 22 C -0.18 -1.83 10.25 -26.69 -0.27 -2.10 16 23 N -0.45 -8.42 3.09 -106.97 -0.33 -8.75 16 24 C 0.07 1.07 5.19 -67.89 -0.35 0.71 16 25 C -0.18 -1.99 9.57 -26.73 -0.26 -2.24 16 26 C -0.15 -1.97 9.94 -26.70 -0.27 -2.23 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.03 0.77 7.03 -51.93 -0.37 0.41 16 29 H 0.05 1.33 7.38 -51.92 -0.38 0.95 16 30 H 0.07 1.34 7.74 -51.93 -0.40 0.93 16 31 H 0.07 1.53 6.29 -51.93 -0.33 1.21 16 32 H 0.10 1.73 8.14 -51.93 -0.42 1.30 16 33 H 0.10 1.80 8.03 -51.93 -0.42 1.38 16 34 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.08 0.88 6.85 -51.93 -0.36 0.53 16 39 H 0.11 1.75 8.07 -51.93 -0.42 1.33 16 40 H 0.09 0.93 8.03 -51.93 -0.42 0.51 16 41 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.13 2.04 8.14 -51.93 -0.42 1.62 16 45 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 48 H 0.11 1.61 8.08 -51.93 -0.42 1.19 16 LS Contribution 392.46 15.07 5.91 5.91 Total: -1.00 -31.02 392.46 -13.19 -44.22 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -8.06 Total: 6.91 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -6.41 Total: -16.82 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: 0.38 Total: -57.13 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.02 -13.19 -44.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001391045732.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.347 kcal (2) G-P(sol) polarization free energy of solvation -31.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds