Wall clock time and date at job start Tue Mar 31 2020 10:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00052 * 2 1 4 4 H 1.48501 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47338 * 299.99884 * 3 2 1 6 6 H 1.48499 * 109.47173 * 60.00102 * 3 2 1 7 7 C 1.37876 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00152 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99902 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47430 * 182.59209 * 9 7 2 11 11 C 1.46896 * 111.00010 * 64.45160 * 10 9 7 12 12 C 1.53004 * 109.46976 * 71.72157 * 11 10 9 13 13 C 1.52996 * 117.49881 * 244.67226 * 12 11 10 14 14 C 1.53002 * 117.49938 * 176.04709 * 12 11 10 15 15 C 1.38583 * 110.99811 * 300.50533 * 10 9 7 16 16 N 1.31215 * 126.47614 * 110.91406 * 15 10 9 17 17 N 1.28535 * 109.85793 * 180.25710 * 16 15 10 18 18 C 1.30295 * 110.05223 * 359.74800 * 17 16 15 19 19 C 1.50704 * 126.34082 * 180.02562 * 18 17 16 20 20 C 1.52997 * 109.46968 * 269.95577 * 19 18 17 21 21 C 1.53003 * 117.49580 * 243.75101 * 20 19 18 22 22 C 1.52997 * 117.49678 * 175.09236 * 20 19 18 23 23 N 1.36452 * 126.46886 * 290.74278 * 15 10 9 24 24 C 1.46500 * 127.13697 * 0.02562 * 23 15 10 25 25 C 1.53005 * 117.49449 * 243.79532 * 24 23 15 26 26 C 1.52994 * 60.03114 * 107.49955 * 25 24 23 27 27 H 0.97007 * 120.00044 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46978 * 62.58522 * 9 7 2 29 29 H 1.09007 * 109.46806 * 302.59155 * 9 7 2 30 30 H 1.08996 * 109.47560 * 191.71976 * 11 10 9 31 31 H 1.09003 * 109.47777 * 311.72019 * 11 10 9 32 32 H 1.09006 * 115.55091 * 30.37832 * 12 11 10 33 33 H 1.09006 * 117.50457 * 359.97438 * 13 12 11 34 34 H 1.09004 * 117.50139 * 145.01988 * 13 12 11 35 35 H 1.08994 * 117.49778 * 214.97512 * 14 12 11 36 36 H 1.08997 * 117.50056 * 0.02562 * 14 12 11 37 37 H 1.09001 * 109.47223 * 29.95925 * 19 18 17 38 38 H 1.09004 * 109.46305 * 149.95476 * 19 18 17 39 39 H 1.08998 * 115.54971 * 29.41425 * 20 19 18 40 40 H 1.08998 * 117.50376 * 359.97438 * 21 20 19 41 41 H 1.09002 * 117.49982 * 145.02186 * 21 20 19 42 42 H 1.09002 * 117.49942 * 214.97542 * 22 20 19 43 43 H 1.09001 * 117.50231 * 359.97438 * 22 20 19 44 44 H 1.09000 * 115.55500 * 98.12526 * 24 23 15 45 45 H 1.09002 * 117.49656 * 215.00136 * 25 24 23 46 46 H 1.08997 * 117.50179 * 359.97438 * 25 24 23 47 47 H 1.09005 * 117.50012 * 107.49958 * 26 25 24 48 48 H 1.09005 * 117.49977 * 252.51649 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2042 -3.6150 0.0638 11 6 2.9463 -3.6023 1.3315 12 6 2.0148 -4.0179 2.4719 13 6 1.7073 -2.9753 3.5485 14 6 2.6255 -4.1568 3.8679 15 6 3.0696 -3.5909 -1.0184 16 7 4.3536 -3.3229 -0.9845 17 7 4.8440 -3.3847 -2.1711 18 6 3.9107 -3.6985 -3.0244 19 6 4.0815 -3.8696 -4.5119 20 6 3.8456 -2.5287 -5.2098 21 6 2.6579 -2.4310 -6.1693 22 6 4.0859 -2.4663 -6.7195 23 7 2.7479 -3.8444 -2.3200 24 6 1.4288 -4.1941 -2.8530 25 6 1.2687 -5.5749 -3.4924 26 6 0.6400 -5.2870 -2.1276 27 1 -0.4850 0.8401 -0.0004 28 1 0.6599 -2.5774 -0.9119 29 1 0.5896 -2.5368 0.8662 30 1 3.7808 -4.3008 1.2711 31 1 3.3261 -2.5981 1.5202 32 1 1.2185 -4.7107 2.1997 33 1 2.1689 -1.9933 3.4447 34 1 0.7084 -2.9818 3.9848 35 1 2.2306 -4.9406 4.5142 36 1 3.6907 -3.9517 3.9739 37 1 5.0927 -4.2168 -4.7240 38 1 3.3617 -4.6016 -4.8783 39 1 4.0932 -1.6437 -4.6237 40 1 2.0447 -3.3221 -6.3037 41 1 2.1243 -1.4816 -6.2148 42 1 4.4912 -1.5400 -7.1268 43 1 4.4124 -3.3804 -7.2155 44 1 0.8637 -3.3696 -3.2877 45 1 0.5982 -5.6587 -4.3477 46 1 2.1447 -6.2229 -3.5168 47 1 -0.4440 -5.1815 -2.0849 48 1 1.1026 -5.7456 -1.2536 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001391045732.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:06 Heat of formation + Delta-G solvation = 148.721481 kcal Electronic energy + Delta-G solvation = -27816.248598 eV Core-core repulsion = 24295.789339 eV Total energy + Delta-G solvation = -3520.459260 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.83124 -39.43943 -38.57985 -38.26704 -36.98418 -34.68914 -33.64737 -32.15220 -29.57007 -28.35787 -27.12116 -25.01024 -23.98077 -23.64707 -23.18219 -23.12644 -22.25784 -21.52420 -21.07718 -20.71974 -18.73416 -18.26127 -17.50855 -17.15529 -16.75705 -16.64184 -16.27505 -15.68028 -15.43929 -15.07557 -14.82493 -14.67300 -14.40891 -14.31998 -13.89288 -13.52913 -13.20189 -13.13796 -12.66559 -12.62395 -12.52123 -12.44516 -12.37258 -12.31205 -12.30874 -12.18783 -12.09603 -11.94185 -11.69155 -11.29840 -11.18247 -11.12223 -10.85313 -10.80472 -10.70597 -10.66005 -10.39436 -9.10617 -8.28337 -6.40455 0.93930 1.21450 1.25293 1.37494 1.44985 1.95372 2.28239 2.58984 2.86758 2.88672 3.00944 3.12162 3.41763 3.64445 3.76991 3.87053 3.94141 3.98804 4.01490 4.07542 4.12986 4.18444 4.29330 4.30236 4.47664 4.60067 4.67964 4.70033 4.75956 4.82224 4.82299 4.83322 4.92690 5.00809 5.03328 5.06164 5.09063 5.11658 5.17499 5.21227 5.25364 5.28347 5.31295 5.33651 5.39551 5.64120 5.75391 5.93450 6.03442 6.52316 6.73350 7.28262 7.92250 8.76041 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.010503 B = 0.005600 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.385529 B = 4998.885652 C = 6250.679835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.033 3.967 3 Si 0.935 3.065 4 H -0.288 1.288 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.552 4.552 8 H 0.039 0.961 9 C 0.220 3.780 10 N -0.447 5.447 11 C 0.114 3.886 12 C -0.148 4.148 13 C -0.182 4.182 14 C -0.153 4.153 15 C 0.393 3.607 16 N -0.376 5.376 17 N -0.333 5.333 18 C 0.178 3.822 19 C 0.017 3.983 20 C -0.172 4.172 21 C -0.174 4.174 22 C -0.151 4.151 23 N -0.446 5.446 24 C 0.030 3.970 25 C -0.133 4.133 26 C -0.153 4.153 27 H 0.267 0.733 28 H 0.018 0.982 29 H 0.039 0.961 30 H 0.066 0.934 31 H 0.030 0.970 32 H 0.112 0.888 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.120 0.880 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.065 0.935 40 H 0.117 0.883 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.146 0.854 46 H 0.103 0.897 47 H 0.123 0.877 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.237 -12.540 -9.127 15.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.168 4.168 3 Si 0.761 3.239 4 H -0.213 1.213 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.591 4.591 8 H 0.058 0.942 9 C 0.095 3.905 10 N -0.170 5.170 11 C -0.013 4.013 12 C -0.166 4.166 13 C -0.219 4.219 14 C -0.190 4.190 15 C 0.035 3.965 16 N -0.220 5.220 17 N -0.172 5.172 18 C -0.091 4.091 19 C -0.023 4.023 20 C -0.192 4.192 21 C -0.211 4.211 22 C -0.188 4.188 23 N -0.139 5.139 24 C -0.074 4.074 25 C -0.170 4.170 26 C -0.191 4.191 27 H 0.076 0.924 28 H 0.036 0.964 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.049 0.951 32 H 0.130 0.870 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.138 0.862 36 H 0.111 0.889 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.084 0.916 40 H 0.135 0.865 41 H 0.101 0.899 42 H 0.114 0.886 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.164 0.836 46 H 0.121 0.879 47 H 0.142 0.858 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.674 -12.504 -8.564 15.170 hybrid contribution -0.363 2.216 0.066 2.246 sum 0.311 -10.288 -8.498 13.348 Atomic orbital electron populations 1.69982 1.06503 1.27662 1.50658 1.25400 0.95466 1.01367 0.94607 0.85865 0.78499 0.81136 0.78380 1.21344 1.20205 1.19259 1.21844 0.92699 0.93107 1.51452 0.94248 1.19486 0.89658 0.84035 0.97306 1.59296 1.14534 1.44182 0.98944 1.21336 0.94286 0.99572 0.86119 1.22067 1.02115 1.03214 0.89249 1.22934 1.01191 0.94176 1.03563 1.23029 0.99088 1.00359 0.96506 1.22660 0.90915 0.97732 0.85151 1.74482 1.07355 1.24430 1.15759 1.73729 1.27501 1.19810 0.96142 1.25184 0.81533 1.04121 0.98218 1.19656 1.05080 0.96800 0.80717 1.22032 1.06613 0.97314 0.93259 1.23159 0.91467 1.03819 1.02678 1.23076 0.98311 1.04545 0.92848 1.45563 1.09675 1.52999 1.05693 1.22013 0.83107 0.94949 1.07321 1.23527 1.03455 0.92500 0.97538 1.23283 1.00655 0.98395 0.96723 0.92414 0.96377 0.94312 0.91549 0.95134 0.86999 0.91057 0.88175 0.86203 0.88882 0.87371 0.87108 0.91617 0.86492 0.89901 0.88584 0.86049 0.85965 0.83621 0.87911 0.85849 0.89007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.03 13.29 21.45 0.28 -51.75 16 2 C 0.03 1.85 5.46 84.65 0.46 2.31 16 3 Si 0.93 46.27 29.54 68.60 2.03 48.29 16 4 H -0.29 -14.96 7.11 99.48 0.71 -14.25 16 5 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 6 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.55 -31.37 7.55 25.60 0.19 -31.17 16 8 H 0.04 2.44 6.55 -2.91 -0.02 2.42 16 9 C 0.22 11.06 4.92 85.56 0.42 11.48 16 10 N -0.45 -19.59 4.32 -710.35 -3.07 -22.66 16 11 C 0.11 4.82 4.59 86.31 0.40 5.21 16 12 C -0.15 -5.11 5.04 -10.79 -0.05 -5.17 16 13 C -0.18 -6.13 10.18 30.59 0.31 -5.82 16 14 C -0.15 -4.22 10.25 30.60 0.31 -3.91 16 15 C 0.39 17.81 5.61 260.11 1.46 19.27 16 16 N -0.38 -18.66 11.05 -58.00 -0.64 -19.30 16 17 N -0.33 -15.20 12.18 -49.54 -0.60 -15.81 16 18 C 0.18 6.61 7.27 137.64 1.00 7.61 16 19 C 0.02 0.42 5.87 29.85 0.18 0.59 16 20 C -0.17 -4.42 5.72 -10.79 -0.06 -4.48 16 21 C -0.17 -3.51 10.18 30.62 0.31 -3.20 16 22 C -0.15 -2.68 10.25 30.62 0.31 -2.37 16 23 N -0.45 -16.95 3.09 -492.33 -1.52 -18.47 16 24 C 0.03 0.87 5.19 45.02 0.23 1.11 16 25 C -0.13 -2.45 9.57 30.59 0.29 -2.16 16 26 C -0.15 -3.80 9.94 30.62 0.30 -3.50 16 27 H 0.27 14.43 8.31 -92.70 -0.77 13.66 16 28 H 0.02 0.95 7.03 -2.39 -0.02 0.94 16 29 H 0.04 2.05 7.38 -2.38 -0.02 2.03 16 30 H 0.07 2.76 7.74 -2.39 -0.02 2.74 16 31 H 0.03 1.49 6.29 -2.39 -0.02 1.48 16 32 H 0.11 3.69 8.14 -2.38 -0.02 3.67 16 33 H 0.07 2.77 8.03 -2.38 -0.02 2.75 16 34 H 0.10 3.09 8.14 -2.38 -0.02 3.07 16 35 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.11 2.05 6.85 -2.38 -0.02 2.03 16 39 H 0.07 2.24 8.07 -2.39 -0.02 2.22 16 40 H 0.12 1.82 8.03 -2.39 -0.02 1.80 16 41 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.12 3.77 8.14 -2.39 -0.02 3.75 16 45 H 0.15 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.12 2.67 8.14 -2.38 -0.02 2.65 16 48 H 0.09 2.65 8.08 -2.38 -0.02 2.63 16 Total: -1.00 -72.26 392.46 3.49 -68.78 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 0.94 Total: 25.12 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: 6.07 Total: -14.20 kcal Atomic # 7 Polarization: -122.43 SS G_CDS: -5.55 Total: -127.98 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.29 kcal Total: -72.26 3.49 -68.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001391045732.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.500 kcal (2) G-P(sol) polarization free energy of solvation -72.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds