Wall clock time and date at job start Tue Mar 31 2020 11:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 115.56312 * 2 1 4 4 C 1.53003 * 117.50041 * 214.32110 * 2 1 3 5 5 C 1.53000 * 60.00020 * 252.50421 * 4 2 1 6 6 H 1.09004 * 117.49814 * 107.50501 * 5 4 2 7 7 N 1.46497 * 117.49952 * 252.50968 * 5 4 2 8 8 C 1.36742 * 127.13586 * 185.96352 * 7 5 4 9 9 C 1.50698 * 126.35150 * 0.02562 * 8 7 5 10 10 C 1.52999 * 117.50172 * 188.62405 * 9 8 7 11 11 C 1.52995 * 117.50413 * 119.99696 * 9 8 7 12 12 N 1.30296 * 107.30250 * 179.97438 * 8 7 5 13 13 N 1.28528 * 110.05678 * 359.72842 * 12 8 7 14 14 C 1.31222 * 109.85464 * 0.45097 * 13 12 8 15 15 N 1.38584 * 126.46783 * 179.82377 * 14 13 12 16 16 C 1.46843 * 110.99621 * 296.74243 * 15 14 13 17 17 C 1.53046 * 109.51154 * 185.84792 * 16 15 14 18 18 C 1.53127 * 109.27679 * 300.80540 * 17 16 15 19 19 C 1.50694 * 109.51858 * 177.56845 * 18 17 16 20 20 H 1.07996 * 120.00173 * 240.32164 * 19 18 17 21 21 C 1.37881 * 120.00037 * 60.33292 * 19 18 17 22 22 N 1.31515 * 120.00261 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99797 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47236 * 59.99784 * 23 21 19 25 25 H 1.48506 * 109.46728 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47148 * 299.99494 * 23 21 19 27 27 C 1.53118 * 109.15162 * 57.67105 * 18 17 16 28 28 C 1.46841 * 110.99902 * 60.95395 * 15 14 13 29 29 H 1.09006 * 109.46599 * 274.29953 * 1 2 3 30 30 H 1.08996 * 109.47550 * 34.29919 * 1 2 3 31 31 H 1.09001 * 109.47303 * 154.30856 * 1 2 3 32 32 H 1.08993 * 117.50707 * 145.01708 * 4 2 1 33 33 H 1.09009 * 117.49655 * 359.97438 * 4 2 1 34 34 H 1.09003 * 115.54546 * 334.32805 * 9 8 7 35 35 H 1.08992 * 117.49695 * 359.97438 * 10 9 8 36 36 H 1.08996 * 117.49917 * 145.01573 * 10 9 8 37 37 H 1.08996 * 117.50173 * 214.98257 * 11 9 8 38 38 H 1.09002 * 117.49433 * 0.02562 * 11 9 8 39 39 H 1.08996 * 109.46524 * 305.85471 * 16 15 14 40 40 H 1.09000 * 109.46379 * 65.83846 * 16 15 14 41 41 H 1.09000 * 109.50213 * 60.75807 * 17 16 15 42 42 H 1.09000 * 109.50581 * 180.87470 * 17 16 15 43 43 H 1.08998 * 109.58175 * 297.73542 * 18 17 16 44 44 H 0.97000 * 120.00462 * 180.02562 * 22 21 19 45 45 H 1.08997 * 109.50115 * 182.40177 * 27 18 17 46 46 H 1.08994 * 109.50399 * 62.27746 * 27 18 17 47 47 H 1.08995 * 109.46580 * 294.16941 * 28 15 14 48 48 H 1.09002 * 109.46508 * 54.15730 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1209 -0.7652 5 6 2.2366 -1.1211 0.7648 6 1 1.6116 -1.8589 1.2680 7 7 3.4933 -0.7907 1.4412 8 6 3.7462 -0.8415 2.7841 9 6 2.7755 -1.2527 3.8609 10 6 3.2036 -1.0447 5.3150 11 6 3.1501 -2.4565 4.7277 12 7 4.9825 -0.4695 2.9599 13 7 5.5254 -0.1947 1.8278 14 6 4.6545 -0.3690 0.8619 15 7 4.8744 -0.1684 -0.4916 16 6 5.1797 1.2404 -0.7719 17 6 5.2723 1.4521 -2.2848 18 6 6.3697 0.5494 -2.8554 19 6 6.4253 0.7094 -4.3528 20 1 6.2522 -0.1424 -4.9937 21 6 6.6974 1.9433 -4.9047 22 7 6.9079 2.9808 -4.1244 23 14 6.7669 2.1414 -6.7609 24 1 5.4554 1.7669 -7.3482 25 1 7.0737 3.5551 -7.0966 26 1 7.8265 1.2598 -7.3134 27 6 6.0528 -0.9077 -2.5079 28 6 5.9374 -1.0512 -0.9885 29 1 -0.3633 0.0771 1.0249 30 1 -0.3634 0.8489 -0.5791 31 1 -0.3634 -0.9261 -0.4455 32 1 3.1715 -0.8751 -1.2685 33 1 1.6112 -1.8586 -1.2683 34 1 1.7212 -1.1135 3.6215 35 1 4.1875 -0.6108 5.4927 36 1 2.4310 -0.7685 6.0325 37 1 2.3423 -3.1091 5.0588 38 1 4.0989 -2.9508 4.5193 39 1 4.3897 1.8712 -0.3646 40 1 6.1306 1.5049 -0.3093 41 1 4.3174 1.2007 -2.7465 42 1 5.5142 2.4945 -2.4923 43 1 7.3315 0.8261 -2.4235 44 1 7.0989 3.8489 -4.5126 45 1 6.8524 -1.5514 -2.8745 46 1 5.1103 -1.1961 -2.9732 47 1 6.8846 -0.7758 -0.5249 48 1 5.6976 -2.0847 -0.7387 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433316472.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:58 Heat of formation + Delta-G solvation = 136.220777 kcal Electronic energy + Delta-G solvation = -27505.283213 eV Core-core repulsion = 23984.281883 eV Total energy + Delta-G solvation = -3521.001331 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.88005 -38.56493 -37.93730 -37.23577 -34.02377 -33.06815 -31.49746 -30.01082 -28.99181 -28.41651 -25.82210 -24.07453 -23.73073 -22.61092 -22.35611 -22.18473 -21.01401 -20.25799 -20.02690 -18.55595 -17.43293 -16.56619 -16.16931 -15.92438 -15.67951 -14.71589 -14.58480 -14.35496 -14.15528 -14.08665 -13.36007 -13.21223 -12.87061 -12.65180 -12.59369 -12.46229 -12.04147 -11.77481 -11.67084 -11.62306 -11.37884 -11.31733 -11.14504 -11.03137 -10.87846 -10.81771 -10.62246 -10.51746 -10.32235 -10.18730 -10.11596 -9.57443 -9.41266 -9.09780 -8.82852 -8.64676 -8.33281 -8.22861 -6.00320 -4.06134 1.74402 2.27424 2.90248 3.31148 3.36411 3.38569 3.54927 3.73144 3.93119 4.09742 4.42719 4.46203 4.53553 4.62760 4.66441 4.69951 4.82245 5.11711 5.22107 5.29653 5.33328 5.39830 5.46454 5.53058 5.61390 5.66595 5.73199 5.79250 5.84683 5.92369 5.94688 5.99099 6.05396 6.12572 6.15926 6.20693 6.40771 6.48671 6.51295 6.71570 6.77023 6.89816 7.03784 7.31444 7.36681 7.62847 7.73102 7.96939 8.07543 8.42230 8.90949 8.97161 9.58676 11.05971 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.020329 B = 0.003499 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.979557 B = 8000.986273 C = 8705.577537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.146 4.146 3 H 0.109 0.891 4 C -0.167 4.167 5 C 0.051 3.949 6 H 0.136 0.864 7 N -0.435 5.435 8 C 0.201 3.799 9 C -0.081 4.081 10 C -0.149 4.149 11 C -0.160 4.160 12 N -0.288 5.288 13 N -0.313 5.313 14 C 0.361 3.639 15 N -0.460 5.460 16 C 0.067 3.933 17 C -0.102 4.102 18 C 0.047 3.953 19 C -0.512 4.512 20 H 0.055 0.945 21 C 0.062 3.938 22 N -0.891 5.891 23 Si 0.890 3.110 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.278 1.278 27 C -0.105 4.105 28 C 0.069 3.931 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.152 0.848 33 H 0.102 0.898 34 H 0.121 0.879 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.054 0.946 40 H 0.045 0.955 41 H 0.046 0.954 42 H 0.100 0.900 43 H 0.026 0.974 44 H 0.261 0.739 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.047 0.953 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.850 -8.986 13.357 21.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.165 4.165 3 H 0.127 0.873 4 C -0.204 4.204 5 C -0.054 4.054 6 H 0.153 0.847 7 N -0.126 5.126 8 C -0.065 4.065 9 C -0.102 4.102 10 C -0.187 4.187 11 C -0.198 4.198 12 N -0.129 5.129 13 N -0.156 5.156 14 C 0.005 3.995 15 N -0.187 5.187 16 C -0.059 4.059 17 C -0.140 4.140 18 C 0.029 3.971 19 C -0.550 4.550 20 H 0.073 0.927 21 C -0.139 4.139 22 N -0.529 5.529 23 Si 0.718 3.282 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.204 1.204 27 C -0.143 4.143 28 C -0.057 4.057 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.170 0.830 33 H 0.120 0.880 34 H 0.139 0.861 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.118 0.882 43 H 0.044 0.956 44 H 0.071 0.929 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.066 0.934 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.910 -8.557 13.760 20.718 hybrid contribution -0.567 0.100 -1.297 1.420 sum -13.478 -8.457 12.463 20.211 Atomic orbital electron populations 1.21377 0.92009 1.02559 1.01827 1.22796 0.95454 0.95425 1.02872 0.87327 1.24170 1.05756 0.99834 0.90646 1.22057 0.85664 1.03260 0.94392 0.84658 1.45672 1.10902 1.49395 1.06583 1.23572 0.95354 1.05191 0.82432 1.19997 0.95952 1.05422 0.88800 1.23007 1.04133 0.98903 0.92668 1.23065 1.03657 0.91050 1.02055 1.73937 1.04231 1.16292 1.18423 1.74687 1.25035 1.21011 0.94876 1.22709 0.83388 1.00559 0.92854 1.59115 1.45796 1.09547 1.04258 1.22426 0.99233 0.83244 1.00964 1.21745 0.99615 1.04615 0.88072 1.18703 0.94383 0.88376 0.95661 1.21118 1.47979 0.94604 0.91325 0.92700 1.24964 0.95121 0.96085 0.97747 1.69849 1.48366 1.00229 1.34502 0.86692 0.78486 0.76967 0.86031 1.20335 1.21384 1.20352 1.21741 1.00947 1.01029 0.90590 1.22241 0.91283 0.94140 0.98080 0.92296 0.91439 0.92192 0.83041 0.87951 0.86117 0.87192 0.87966 0.87970 0.88222 0.92770 0.93647 0.93567 0.88225 0.95604 0.92933 0.92276 0.92299 0.93440 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 10.19 37.16 0.38 -0.62 16 2 C -0.15 -1.65 6.32 -90.62 -0.57 -2.22 16 3 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 4 C -0.17 -2.02 9.57 -26.73 -0.26 -2.27 16 5 C 0.05 0.60 6.41 -67.93 -0.44 0.16 16 6 H 0.14 1.23 8.14 -51.93 -0.42 0.81 16 7 N -0.43 -6.55 3.14 -107.01 -0.34 -6.89 16 8 C 0.20 2.99 7.59 -154.01 -1.17 1.82 16 9 C -0.08 -0.83 6.03 -91.78 -0.55 -1.39 16 10 C -0.15 -1.33 10.15 -26.73 -0.27 -1.60 16 11 C -0.16 -1.36 10.23 -26.73 -0.27 -1.64 16 12 N -0.29 -5.22 11.79 32.99 0.39 -4.83 16 13 N -0.31 -6.24 12.19 30.31 0.37 -5.87 16 14 C 0.36 6.47 6.29 -318.87 -2.01 4.47 16 15 N -0.46 -8.24 1.75 -174.55 -0.31 -8.55 16 16 C 0.07 1.34 5.39 -3.83 -0.02 1.32 16 17 C -0.10 -2.29 5.12 -26.64 -0.14 -2.42 16 18 C 0.05 1.12 2.16 -91.65 -0.20 0.93 16 19 C -0.51 -13.50 8.56 -34.44 -0.29 -13.80 16 20 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 21 C 0.06 1.67 5.31 -17.82 -0.09 1.57 16 22 N -0.89 -24.80 11.37 55.43 0.63 -24.17 16 23 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 C -0.11 -2.08 5.32 -26.65 -0.14 -2.22 16 28 C 0.07 1.27 5.37 -3.83 -0.02 1.25 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.43 7.90 -51.93 -0.41 0.02 16 32 H 0.15 2.30 5.26 -51.93 -0.27 2.03 16 33 H 0.10 1.02 8.05 -51.92 -0.42 0.60 16 34 H 0.12 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.11 1.18 7.92 -51.93 -0.41 0.76 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.05 1.03 8.10 -51.93 -0.42 0.61 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.10 2.52 6.17 -51.93 -0.32 2.20 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 48 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 LS Contribution 382.65 15.07 5.77 5.77 Total: -1.00 -29.70 382.65 -12.71 -42.40 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -8.13 Total: 2.99 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -6.07 Total: -16.67 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: 0.75 Total: -50.31 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.70 -12.71 -42.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433316472.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.623 kcal (2) G-P(sol) polarization free energy of solvation -29.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds