Wall clock time and date at job start Tue Mar 31 2020 11:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 115.56312 * 2 1 4 4 C 1.53003 * 117.50041 * 214.32110 * 2 1 3 5 5 C 1.53000 * 60.00020 * 252.50421 * 4 2 1 6 6 H 1.09004 * 117.49814 * 107.50501 * 5 4 2 7 7 N 1.46497 * 117.49952 * 252.50968 * 5 4 2 8 8 C 1.36742 * 127.13586 * 185.96352 * 7 5 4 9 9 C 1.50698 * 126.35150 * 0.02562 * 8 7 5 10 10 C 1.52999 * 117.50172 * 188.62405 * 9 8 7 11 11 C 1.52995 * 117.50413 * 119.99696 * 9 8 7 12 12 N 1.30296 * 107.30250 * 179.97438 * 8 7 5 13 13 N 1.28528 * 110.05678 * 359.72842 * 12 8 7 14 14 C 1.31222 * 109.85464 * 0.45097 * 13 12 8 15 15 N 1.38584 * 126.46783 * 179.82377 * 14 13 12 16 16 C 1.46843 * 110.99621 * 296.74243 * 15 14 13 17 17 C 1.53046 * 109.51154 * 185.84792 * 16 15 14 18 18 C 1.53127 * 109.27679 * 300.80540 * 17 16 15 19 19 C 1.50694 * 109.51858 * 177.56845 * 18 17 16 20 20 H 1.07996 * 120.00173 * 240.32164 * 19 18 17 21 21 C 1.37881 * 120.00037 * 60.33292 * 19 18 17 22 22 N 1.31515 * 120.00261 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99797 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47236 * 59.99784 * 23 21 19 25 25 H 1.48506 * 109.46728 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47148 * 299.99494 * 23 21 19 27 27 C 1.53118 * 109.15162 * 57.67105 * 18 17 16 28 28 C 1.46841 * 110.99902 * 60.95395 * 15 14 13 29 29 H 1.09006 * 109.46599 * 274.29953 * 1 2 3 30 30 H 1.08996 * 109.47550 * 34.29919 * 1 2 3 31 31 H 1.09001 * 109.47303 * 154.30856 * 1 2 3 32 32 H 1.08993 * 117.50707 * 145.01708 * 4 2 1 33 33 H 1.09009 * 117.49655 * 359.97438 * 4 2 1 34 34 H 1.09003 * 115.54546 * 334.32805 * 9 8 7 35 35 H 1.08992 * 117.49695 * 359.97438 * 10 9 8 36 36 H 1.08996 * 117.49917 * 145.01573 * 10 9 8 37 37 H 1.08996 * 117.50173 * 214.98257 * 11 9 8 38 38 H 1.09002 * 117.49433 * 0.02562 * 11 9 8 39 39 H 1.08996 * 109.46524 * 305.85471 * 16 15 14 40 40 H 1.09000 * 109.46379 * 65.83846 * 16 15 14 41 41 H 1.09000 * 109.50213 * 60.75807 * 17 16 15 42 42 H 1.09000 * 109.50581 * 180.87470 * 17 16 15 43 43 H 1.08998 * 109.58175 * 297.73542 * 18 17 16 44 44 H 0.97000 * 120.00462 * 180.02562 * 22 21 19 45 45 H 1.08997 * 109.50115 * 182.40177 * 27 18 17 46 46 H 1.08994 * 109.50399 * 62.27746 * 27 18 17 47 47 H 1.08995 * 109.46580 * 294.16941 * 28 15 14 48 48 H 1.09002 * 109.46508 * 54.15730 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1209 -0.7652 5 6 2.2366 -1.1211 0.7648 6 1 1.6116 -1.8589 1.2680 7 7 3.4933 -0.7907 1.4412 8 6 3.7462 -0.8415 2.7841 9 6 2.7755 -1.2527 3.8609 10 6 3.2036 -1.0447 5.3150 11 6 3.1501 -2.4565 4.7277 12 7 4.9825 -0.4695 2.9599 13 7 5.5254 -0.1947 1.8278 14 6 4.6545 -0.3690 0.8619 15 7 4.8744 -0.1684 -0.4916 16 6 5.1797 1.2404 -0.7719 17 6 5.2723 1.4521 -2.2848 18 6 6.3697 0.5494 -2.8554 19 6 6.4253 0.7094 -4.3528 20 1 6.2522 -0.1424 -4.9937 21 6 6.6974 1.9433 -4.9047 22 7 6.9079 2.9808 -4.1244 23 14 6.7669 2.1414 -6.7609 24 1 5.4554 1.7669 -7.3482 25 1 7.0737 3.5551 -7.0966 26 1 7.8265 1.2598 -7.3134 27 6 6.0528 -0.9077 -2.5079 28 6 5.9374 -1.0512 -0.9885 29 1 -0.3633 0.0771 1.0249 30 1 -0.3634 0.8489 -0.5791 31 1 -0.3634 -0.9261 -0.4455 32 1 3.1715 -0.8751 -1.2685 33 1 1.6112 -1.8586 -1.2683 34 1 1.7212 -1.1135 3.6215 35 1 4.1875 -0.6108 5.4927 36 1 2.4310 -0.7685 6.0325 37 1 2.3423 -3.1091 5.0588 38 1 4.0989 -2.9508 4.5193 39 1 4.3897 1.8712 -0.3646 40 1 6.1306 1.5049 -0.3093 41 1 4.3174 1.2007 -2.7465 42 1 5.5142 2.4945 -2.4923 43 1 7.3315 0.8261 -2.4235 44 1 7.0989 3.8489 -4.5126 45 1 6.8524 -1.5514 -2.8745 46 1 5.1103 -1.1961 -2.9732 47 1 6.8846 -0.7758 -0.5249 48 1 5.6976 -2.0847 -0.7387 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433316472.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:58 Heat of formation + Delta-G solvation = 124.688515 kcal Electronic energy + Delta-G solvation = -27505.783290 eV Core-core repulsion = 23984.281883 eV Total energy + Delta-G solvation = -3521.501407 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.15021 -40.08280 -38.95328 -38.05860 -35.82983 -34.23870 -33.33413 -31.71778 -30.38460 -29.19272 -27.66355 -25.10782 -25.02929 -23.98917 -23.84607 -23.25831 -21.94080 -21.50970 -21.14824 -20.23764 -18.59655 -18.34171 -17.61021 -17.23487 -16.68176 -16.51390 -15.75467 -15.51719 -15.36286 -15.18157 -14.81094 -14.46026 -14.38044 -14.21961 -13.92721 -13.47473 -13.29874 -13.00213 -12.92445 -12.74883 -12.68047 -12.60347 -12.45882 -12.35016 -12.26639 -12.18262 -12.02328 -12.01516 -11.72356 -11.45564 -11.40676 -11.10659 -10.93820 -10.76643 -10.44453 -10.39195 -9.92606 -9.74145 -8.06822 -6.20178 0.52857 1.11204 1.44594 1.45217 1.52738 1.61332 2.45381 2.56293 2.66492 2.94798 3.15837 3.21006 3.52144 3.68169 3.77724 3.80447 3.86669 3.96192 4.08075 4.11101 4.13909 4.33405 4.35444 4.42359 4.43932 4.53452 4.62735 4.71298 4.79896 4.84859 4.88301 4.92989 4.94618 4.96647 4.98354 5.12880 5.16375 5.18161 5.19989 5.29490 5.32180 5.45533 5.47880 5.56941 5.65093 5.70645 5.98313 6.11814 6.24170 6.38077 6.90932 7.48139 7.60385 8.98089 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.020329 B = 0.003499 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.979557 B = 8000.986273 C = 8705.577537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.141 4.141 3 H 0.077 0.923 4 C -0.175 4.175 5 C 0.048 3.952 6 H 0.174 0.826 7 N -0.432 5.432 8 C 0.218 3.782 9 C -0.097 4.097 10 C -0.147 4.147 11 C -0.143 4.143 12 N -0.327 5.327 13 N -0.352 5.352 14 C 0.343 3.657 15 N -0.442 5.442 16 C 0.084 3.916 17 C -0.086 4.086 18 C 0.044 3.956 19 C -0.528 4.528 20 H 0.058 0.942 21 C 0.013 3.987 22 N -0.919 5.919 23 Si 0.953 3.047 24 H -0.268 1.268 25 H -0.289 1.289 26 H -0.273 1.273 27 C -0.092 4.092 28 C 0.078 3.922 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.120 0.880 33 H 0.130 0.870 34 H 0.153 0.847 35 H 0.084 0.916 36 H 0.134 0.866 37 H 0.138 0.862 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.019 0.981 41 H 0.047 0.953 42 H 0.068 0.932 43 H -0.013 1.013 44 H 0.260 0.740 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.026 0.974 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.269 -11.133 13.972 24.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.160 4.160 3 H 0.096 0.904 4 C -0.212 4.212 5 C -0.055 4.055 6 H 0.191 0.809 7 N -0.122 5.122 8 C -0.050 4.050 9 C -0.117 4.117 10 C -0.185 4.185 11 C -0.181 4.181 12 N -0.167 5.167 13 N -0.196 5.196 14 C -0.014 4.014 15 N -0.168 5.168 16 C -0.043 4.043 17 C -0.124 4.124 18 C 0.026 3.974 19 C -0.566 4.566 20 H 0.076 0.924 21 C -0.186 4.186 22 N -0.559 5.559 23 Si 0.779 3.221 24 H -0.193 1.193 25 H -0.214 1.214 26 H -0.199 1.199 27 C -0.130 4.130 28 C -0.049 4.049 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.138 0.862 33 H 0.148 0.852 34 H 0.171 0.829 35 H 0.102 0.898 36 H 0.152 0.848 37 H 0.156 0.844 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.038 0.962 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.005 0.995 44 H 0.069 0.931 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.045 0.955 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.342 -10.721 14.377 24.264 hybrid contribution 0.502 0.762 -1.404 1.675 sum -15.841 -9.959 12.973 22.769 Atomic orbital electron populations 1.21376 0.89199 1.03440 1.03053 1.22781 0.97347 0.93680 1.02238 0.90443 1.24121 1.05071 1.01129 0.90896 1.22561 0.84444 1.04195 0.94284 0.80884 1.45882 1.11079 1.48571 1.06662 1.24518 0.95003 1.02199 0.83234 1.20396 0.96239 1.07174 0.87894 1.23086 1.03829 0.99259 0.92318 1.23141 1.03841 0.90875 1.00249 1.73861 1.06273 1.18571 1.18003 1.74572 1.26872 1.22151 0.95984 1.22603 0.84583 1.01997 0.92229 1.59110 1.44989 1.07852 1.04848 1.22083 0.98141 0.85126 0.98930 1.21433 0.98952 1.02372 0.89671 1.18659 0.92902 0.91263 0.94592 1.21488 1.47751 0.94777 0.92603 0.92381 1.25740 0.94895 0.95877 1.02061 1.70009 1.49130 1.00525 1.36210 0.85690 0.78817 0.76744 0.80859 1.19313 1.21430 1.19865 1.21560 1.01532 0.98204 0.91694 1.22116 0.90657 0.95311 0.96807 0.90692 0.91674 0.90391 0.86217 0.85195 0.82932 0.89762 0.84825 0.84393 0.90222 0.92095 0.96239 0.93400 0.91406 0.99535 0.93134 0.91697 0.91238 0.95546 0.90144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 10.19 71.98 0.73 -0.75 16 2 C -0.14 -2.89 6.32 -10.79 -0.07 -2.96 16 3 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 4 C -0.17 -3.85 9.57 30.60 0.29 -3.55 16 5 C 0.05 0.99 6.41 44.99 0.29 1.27 16 6 H 0.17 2.26 8.14 -2.38 -0.02 2.24 16 7 N -0.43 -12.52 3.14 -492.46 -1.54 -14.07 16 8 C 0.22 6.23 7.59 137.64 1.04 7.28 16 9 C -0.10 -1.67 6.03 -11.54 -0.07 -1.74 16 10 C -0.15 -2.23 10.15 30.59 0.31 -1.92 16 11 C -0.14 -1.95 10.23 30.59 0.31 -1.63 16 12 N -0.33 -12.08 11.79 -49.54 -0.58 -12.67 16 13 N -0.35 -14.60 12.19 -58.00 -0.71 -15.30 16 14 C 0.34 12.52 6.29 260.11 1.64 14.16 16 15 N -0.44 -16.26 1.75 -706.15 -1.23 -17.50 16 16 C 0.08 3.54 5.39 86.33 0.47 4.00 16 17 C -0.09 -4.04 5.12 30.65 0.16 -3.88 16 18 C 0.04 2.20 2.16 -11.46 -0.02 2.18 16 19 C -0.53 -28.43 8.56 25.60 0.22 -28.21 16 20 H 0.06 3.02 7.74 -2.91 -0.02 3.00 16 21 C 0.01 0.70 5.31 84.66 0.45 1.15 16 22 N -0.92 -53.07 11.37 21.45 0.24 -52.83 16 23 Si 0.95 43.12 29.54 68.60 2.03 45.14 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 25 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 26 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 27 C -0.09 -3.70 5.32 30.65 0.16 -3.53 16 28 C 0.08 2.92 5.37 86.33 0.46 3.39 16 29 H 0.07 0.76 8.14 -2.38 -0.02 0.75 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 0.77 7.90 -2.39 -0.02 0.75 16 32 H 0.12 3.53 5.26 -2.39 -0.01 3.52 16 33 H 0.13 2.11 8.05 -2.38 -0.02 2.09 16 34 H 0.15 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.08 1.75 7.92 -2.39 -0.02 1.73 16 36 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.06 2.45 8.10 -2.39 -0.02 2.43 16 40 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.07 3.64 6.17 -2.39 -0.01 3.63 16 43 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 44 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 45 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 46 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 47 H 0.03 1.09 8.14 -2.39 -0.02 1.08 16 48 H 0.08 2.68 8.10 -2.39 -0.02 2.66 16 Total: -1.00 -69.05 382.65 5.51 -63.54 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.93 Total: 18.43 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: 6.37 Total: -14.76 kcal Atomic # 7 Polarization: -108.53 SS G_CDS: -3.83 Total: -112.36 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -69.05 5.51 -63.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433316472.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.232 kcal (2) G-P(sol) polarization free energy of solvation -69.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds