Wall clock time and date at job start Tue Mar 31 2020 11:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 115.54688 * 2 1 4 4 C 1.53070 * 117.49329 * 145.73334 * 2 1 3 5 5 C 1.52998 * 59.98689 * 107.48187 * 4 2 1 6 6 H 1.09001 * 117.50289 * 252.49639 * 5 4 2 7 7 N 1.46501 * 117.49737 * 107.49311 * 5 4 2 8 8 C 1.36743 * 127.13166 * 164.98794 * 7 5 4 9 9 C 1.50696 * 126.35242 * 359.97438 * 8 7 5 10 10 C 1.53001 * 117.50285 * 188.62273 * 9 8 7 11 11 C 1.52999 * 117.50161 * 119.99820 * 9 8 7 12 12 N 1.30297 * 107.30036 * 180.02562 * 8 7 5 13 13 N 1.28521 * 110.05896 * 359.72988 * 12 8 7 14 14 C 1.31226 * 109.85966 * 0.44885 * 13 12 8 15 15 N 1.38574 * 126.47555 * 179.81942 * 14 13 12 16 16 C 1.46840 * 111.00271 * 297.44215 * 15 14 13 17 17 C 1.53040 * 109.52485 * 185.83648 * 16 15 14 18 18 C 1.53116 * 109.27982 * 300.82548 * 17 16 15 19 19 C 1.50693 * 109.52282 * 177.55541 * 18 17 16 20 20 H 1.08003 * 120.00173 * 354.16336 * 19 18 17 21 21 C 1.37878 * 119.99960 * 174.15872 * 19 18 17 22 22 N 1.31517 * 120.00178 * 156.88235 * 21 19 18 23 23 Si 1.86803 * 119.99904 * 336.87903 * 21 19 18 24 24 H 1.48503 * 109.46944 * 180.02562 * 23 21 19 25 25 H 1.48495 * 109.47441 * 299.99787 * 23 21 19 26 26 H 1.48494 * 109.47085 * 60.00109 * 23 21 19 27 27 C 1.53115 * 109.16357 * 57.64952 * 18 17 16 28 28 C 1.46849 * 110.99491 * 61.65422 * 15 14 13 29 29 H 1.09002 * 109.47164 * 205.66841 * 1 2 3 30 30 H 1.08998 * 109.47104 * 325.66742 * 1 2 3 31 31 H 1.08996 * 109.47568 * 85.67115 * 1 2 3 32 32 H 1.09001 * 117.49823 * 359.97438 * 4 2 1 33 33 H 1.09000 * 117.50885 * 214.96230 * 4 2 1 34 34 H 1.09000 * 115.54565 * 334.32686 * 9 8 7 35 35 H 1.09003 * 117.49291 * 359.97438 * 10 9 8 36 36 H 1.08993 * 117.50335 * 145.01787 * 10 9 8 37 37 H 1.08997 * 117.50002 * 214.98097 * 11 9 8 38 38 H 1.08993 * 117.49607 * 359.97438 * 11 9 8 39 39 H 1.09003 * 109.46290 * 65.82404 * 16 15 14 40 40 H 1.09002 * 109.45691 * 305.85305 * 16 15 14 41 41 H 1.09002 * 109.50262 * 180.87730 * 17 16 15 42 42 H 1.09007 * 109.49790 * 60.76504 * 17 16 15 43 43 H 1.09003 * 109.52202 * 297.68599 * 18 17 16 44 44 H 0.97003 * 119.99443 * 354.80230 * 22 21 19 45 45 H 1.09000 * 109.50374 * 62.28794 * 27 18 17 46 46 H 1.08998 * 109.50652 * 182.40811 * 27 18 17 47 47 H 1.09001 * 109.46315 * 294.17047 * 28 15 14 48 48 H 1.09000 * 109.46392 * 54.14866 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2367 -1.1221 0.7645 5 6 2.2364 -1.1208 -0.7655 6 1 1.6112 -1.8578 -1.2694 7 7 3.4932 -0.7900 -1.4418 8 6 3.8026 -0.9994 -2.7572 9 6 2.9070 -1.6212 -3.7975 10 6 3.5246 -1.9443 -5.1595 11 6 2.5497 -0.7734 -5.0200 12 7 5.0159 -0.5627 -2.9440 13 7 5.4883 -0.0902 -1.8462 14 6 4.5979 -0.2096 -0.8897 15 7 4.7487 0.1845 0.4302 16 6 5.8348 -0.5595 1.0807 17 6 5.8774 -0.2055 2.5690 18 6 6.1013 1.3013 2.7241 19 6 6.0842 1.6650 4.1864 20 1 5.8362 0.9180 4.9259 21 6 6.3854 2.9516 4.5803 22 7 5.9514 3.4040 5.7364 23 14 7.4101 4.0520 3.4718 24 1 7.5920 5.3757 4.1199 25 1 8.7376 3.4266 3.2438 26 1 6.7160 4.2283 2.1710 27 6 4.9831 2.0530 1.9968 28 6 4.9665 1.6336 0.5250 29 1 -0.3633 -0.9263 0.4452 30 1 -0.3633 0.8486 0.5796 31 1 -0.3634 0.0776 -1.0247 32 1 1.6113 -1.8597 1.2676 33 1 3.1719 -0.8770 1.2679 34 1 2.1449 -2.3008 -3.4161 35 1 4.5787 -1.7067 -5.3032 36 1 3.1690 -2.8366 -5.6745 37 1 1.5527 -0.8955 -5.4431 38 1 2.9621 0.2342 -5.0715 39 1 6.7851 -0.2944 0.6171 40 1 5.6611 -1.6295 0.9667 41 1 6.6936 -0.7460 3.0484 42 1 4.9324 -0.4830 3.0362 43 1 7.0646 1.5727 2.2923 44 1 5.3574 2.8607 6.2776 45 1 4.0241 1.8111 2.4549 46 1 5.1604 3.1262 2.0673 47 1 5.9209 1.8884 0.0640 48 1 4.1622 2.1564 0.0075 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433316475.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:01 Heat of formation + Delta-G solvation = 135.514276 kcal Electronic energy + Delta-G solvation = -27617.031169 eV Core-core repulsion = 24095.999202 eV Total energy + Delta-G solvation = -3521.031967 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.99895 -38.76454 -38.03620 -37.32306 -34.12232 -33.16764 -31.76724 -30.35427 -29.19718 -28.48418 -25.78759 -24.18352 -23.73120 -22.66335 -22.65470 -21.85155 -21.10422 -20.31169 -20.06155 -18.68013 -17.58253 -17.50017 -16.53729 -16.05962 -15.75050 -14.80639 -14.49341 -14.36881 -14.25516 -13.85041 -13.54010 -13.34257 -13.26967 -12.91347 -12.71257 -12.40087 -12.09951 -12.00375 -11.84237 -11.77678 -11.61460 -11.46268 -11.37552 -11.17632 -10.89385 -10.71582 -10.61803 -10.52747 -10.29281 -10.22698 -9.96400 -9.66575 -9.50968 -9.44025 -8.87020 -8.75938 -8.44830 -8.17453 -6.44377 -4.04310 1.63071 2.15452 2.78915 3.40569 3.46915 3.50593 3.63450 3.65222 3.77117 4.00354 4.36324 4.43725 4.51928 4.55299 4.59633 4.60679 4.74170 5.06533 5.09020 5.19385 5.24063 5.34890 5.35054 5.49375 5.49634 5.54118 5.59295 5.67221 5.77522 5.81520 5.85631 5.86293 5.91097 5.94813 5.99019 6.04451 6.14530 6.26834 6.34244 6.37701 6.59360 6.65764 6.76596 6.96164 7.07064 7.32083 7.43769 7.57151 8.17271 8.39249 8.79265 8.91569 9.61030 10.91848 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018199 B = 0.003849 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.174194 B = 7272.804359 C = 8000.625521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.140 4.140 3 H 0.111 0.889 4 C -0.164 4.164 5 C 0.051 3.949 6 H 0.137 0.863 7 N -0.433 5.433 8 C 0.204 3.796 9 C -0.082 4.082 10 C -0.149 4.149 11 C -0.158 4.158 12 N -0.288 5.288 13 N -0.312 5.312 14 C 0.357 3.643 15 N -0.460 5.460 16 C 0.065 3.935 17 C -0.095 4.095 18 C 0.022 3.978 19 C -0.602 4.602 20 H 0.056 0.944 21 C 0.037 3.963 22 N -0.901 5.901 23 Si 1.035 2.965 24 H -0.287 1.287 25 H -0.284 1.284 26 H -0.277 1.277 27 C -0.112 4.112 28 C 0.066 3.934 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.142 0.858 34 H 0.120 0.880 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.048 0.952 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.019 0.981 44 H 0.269 0.731 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.046 0.954 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.092 -10.897 -17.470 23.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 H 0.129 0.871 4 C -0.202 4.202 5 C -0.053 4.053 6 H 0.155 0.845 7 N -0.124 5.124 8 C -0.063 4.063 9 C -0.103 4.103 10 C -0.187 4.187 11 C -0.196 4.196 12 N -0.128 5.128 13 N -0.155 5.155 14 C 0.002 3.998 15 N -0.187 5.187 16 C -0.061 4.061 17 C -0.133 4.133 18 C 0.003 3.997 19 C -0.639 4.639 20 H 0.074 0.926 21 C -0.169 4.169 22 N -0.534 5.534 23 Si 0.864 3.136 24 H -0.213 1.213 25 H -0.210 1.210 26 H -0.204 1.204 27 C -0.150 4.150 28 C -0.061 4.061 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.159 0.841 34 H 0.138 0.862 35 H 0.128 0.872 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.037 0.963 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.065 0.935 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.491 -9.161 -17.950 22.720 hybrid contribution -1.311 -1.684 0.434 2.178 sum -11.802 -10.845 -17.516 23.742 Atomic orbital electron populations 1.21388 0.91936 1.02614 1.01924 1.22798 0.95451 0.95472 1.02234 0.87060 1.24009 1.05342 1.00143 0.90694 1.22080 0.85637 1.03578 0.94051 0.84520 1.45695 1.12731 1.45254 1.08728 1.23593 0.95079 1.04295 0.83309 1.19998 1.00196 1.03522 0.86561 1.23018 1.00506 0.99529 0.95657 1.23058 1.00700 0.97147 0.98729 1.73944 1.06084 1.14063 1.18730 1.74673 1.24612 1.20213 0.96008 1.22600 0.84707 0.99369 0.93153 1.59013 1.46506 1.07989 1.05144 1.22317 0.90889 0.96200 0.96710 1.21574 1.01506 0.99306 0.90914 1.18997 0.93146 0.90595 0.97011 1.21883 1.53220 0.97882 0.90927 0.92576 1.25689 0.96520 0.96474 0.98187 1.70849 1.30378 1.38422 1.13787 0.84152 0.77231 0.76417 0.75833 1.21270 1.21008 1.20361 1.22102 1.01981 1.00613 0.90300 1.22355 1.00079 0.83143 1.00504 0.92207 0.91342 0.92192 0.87867 0.84068 0.86175 0.87185 0.87913 0.87910 0.88211 0.93313 0.91914 0.91822 0.92023 0.96282 0.92158 0.91810 0.91538 0.93511 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 10.19 37.16 0.38 -0.61 16 2 C -0.14 -1.53 6.22 -90.58 -0.56 -2.10 16 3 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 4 C -0.16 -1.88 9.50 -26.70 -0.25 -2.13 16 5 C 0.05 0.56 6.44 -67.93 -0.44 0.13 16 6 H 0.14 1.13 7.58 -51.93 -0.39 0.74 16 7 N -0.43 -6.19 3.15 -107.01 -0.34 -6.53 16 8 C 0.20 2.88 7.59 -154.01 -1.17 1.71 16 9 C -0.08 -0.79 6.01 -91.77 -0.55 -1.34 16 10 C -0.15 -1.24 10.15 -26.73 -0.27 -1.51 16 11 C -0.16 -1.28 10.23 -26.73 -0.27 -1.55 16 12 N -0.29 -4.96 11.79 32.99 0.39 -4.57 16 13 N -0.31 -5.90 12.19 30.31 0.37 -5.53 16 14 C 0.36 6.07 6.18 -318.87 -1.97 4.10 16 15 N -0.46 -7.78 2.08 -174.54 -0.36 -8.14 16 16 C 0.07 1.14 5.15 -3.84 -0.02 1.12 16 17 C -0.10 -1.83 5.32 -26.65 -0.14 -1.97 16 18 C 0.02 0.49 1.76 -91.66 -0.16 0.33 16 19 C -0.60 -16.26 8.77 -34.44 -0.30 -16.56 16 20 H 0.06 1.63 7.99 -52.48 -0.42 1.21 16 21 C 0.04 1.04 5.28 -17.82 -0.09 0.95 16 22 N -0.90 -27.09 13.70 55.43 0.76 -26.33 16 23 Si 1.04 24.96 26.54 -169.99 -4.51 20.44 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 26 H -0.28 -6.20 5.94 56.52 0.34 -5.87 16 27 C -0.11 -2.32 5.10 -26.65 -0.14 -2.46 16 28 C 0.07 1.20 5.38 -3.83 -0.02 1.18 16 29 H 0.06 0.42 7.90 -51.93 -0.41 0.01 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.10 0.96 8.05 -51.93 -0.42 0.54 16 33 H 0.14 2.02 5.43 -51.93 -0.28 1.74 16 34 H 0.12 0.88 7.62 -51.93 -0.40 0.49 16 35 H 0.11 1.10 7.92 -51.93 -0.41 0.69 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.02 0.45 6.70 -51.93 -0.35 0.10 16 44 H 0.27 8.02 8.73 -40.82 -0.36 7.66 16 45 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 46 H 0.07 1.47 5.47 -51.93 -0.28 1.18 16 47 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.06 1.04 8.10 -51.93 -0.42 0.61 16 LS Contribution 378.03 15.07 5.70 5.70 Total: -1.00 -31.23 378.03 -12.06 -43.29 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -8.07 Total: 2.40 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: -5.99 Total: -20.72 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: 0.82 Total: -51.11 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -4.51 Total: 20.44 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.23 -12.06 -43.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433316475.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.804 kcal (2) G-P(sol) polarization free energy of solvation -31.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds