Wall clock time and date at job start Tue Mar 31 2020 11:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 115.54688 * 2 1 4 4 C 1.53070 * 117.49329 * 145.73334 * 2 1 3 5 5 C 1.52998 * 59.98689 * 107.48187 * 4 2 1 6 6 H 1.09001 * 117.50289 * 252.49639 * 5 4 2 7 7 N 1.46501 * 117.49737 * 107.49311 * 5 4 2 8 8 C 1.36743 * 127.13166 * 164.98794 * 7 5 4 9 9 C 1.50696 * 126.35242 * 359.97438 * 8 7 5 10 10 C 1.53001 * 117.50285 * 188.62273 * 9 8 7 11 11 C 1.52999 * 117.50161 * 119.99820 * 9 8 7 12 12 N 1.30297 * 107.30036 * 180.02562 * 8 7 5 13 13 N 1.28521 * 110.05896 * 359.72988 * 12 8 7 14 14 C 1.31226 * 109.85966 * 0.44885 * 13 12 8 15 15 N 1.38574 * 126.47555 * 179.81942 * 14 13 12 16 16 C 1.46840 * 111.00271 * 297.44215 * 15 14 13 17 17 C 1.53040 * 109.52485 * 185.83648 * 16 15 14 18 18 C 1.53116 * 109.27982 * 300.82548 * 17 16 15 19 19 C 1.50693 * 109.52282 * 177.55541 * 18 17 16 20 20 H 1.08003 * 120.00173 * 354.16336 * 19 18 17 21 21 C 1.37878 * 119.99960 * 174.15872 * 19 18 17 22 22 N 1.31517 * 120.00178 * 156.88235 * 21 19 18 23 23 Si 1.86803 * 119.99904 * 336.87903 * 21 19 18 24 24 H 1.48503 * 109.46944 * 180.02562 * 23 21 19 25 25 H 1.48495 * 109.47441 * 299.99787 * 23 21 19 26 26 H 1.48494 * 109.47085 * 60.00109 * 23 21 19 27 27 C 1.53115 * 109.16357 * 57.64952 * 18 17 16 28 28 C 1.46849 * 110.99491 * 61.65422 * 15 14 13 29 29 H 1.09002 * 109.47164 * 205.66841 * 1 2 3 30 30 H 1.08998 * 109.47104 * 325.66742 * 1 2 3 31 31 H 1.08996 * 109.47568 * 85.67115 * 1 2 3 32 32 H 1.09001 * 117.49823 * 359.97438 * 4 2 1 33 33 H 1.09000 * 117.50885 * 214.96230 * 4 2 1 34 34 H 1.09000 * 115.54565 * 334.32686 * 9 8 7 35 35 H 1.09003 * 117.49291 * 359.97438 * 10 9 8 36 36 H 1.08993 * 117.50335 * 145.01787 * 10 9 8 37 37 H 1.08997 * 117.50002 * 214.98097 * 11 9 8 38 38 H 1.08993 * 117.49607 * 359.97438 * 11 9 8 39 39 H 1.09003 * 109.46290 * 65.82404 * 16 15 14 40 40 H 1.09002 * 109.45691 * 305.85305 * 16 15 14 41 41 H 1.09002 * 109.50262 * 180.87730 * 17 16 15 42 42 H 1.09007 * 109.49790 * 60.76504 * 17 16 15 43 43 H 1.09003 * 109.52202 * 297.68599 * 18 17 16 44 44 H 0.97003 * 119.99443 * 354.80230 * 22 21 19 45 45 H 1.09000 * 109.50374 * 62.28794 * 27 18 17 46 46 H 1.08998 * 109.50652 * 182.40811 * 27 18 17 47 47 H 1.09001 * 109.46315 * 294.17047 * 28 15 14 48 48 H 1.09000 * 109.46392 * 54.14866 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2367 -1.1221 0.7645 5 6 2.2364 -1.1208 -0.7655 6 1 1.6112 -1.8578 -1.2694 7 7 3.4932 -0.7900 -1.4418 8 6 3.8026 -0.9994 -2.7572 9 6 2.9070 -1.6212 -3.7975 10 6 3.5246 -1.9443 -5.1595 11 6 2.5497 -0.7734 -5.0200 12 7 5.0159 -0.5627 -2.9440 13 7 5.4883 -0.0902 -1.8462 14 6 4.5979 -0.2096 -0.8897 15 7 4.7487 0.1845 0.4302 16 6 5.8348 -0.5595 1.0807 17 6 5.8774 -0.2055 2.5690 18 6 6.1013 1.3013 2.7241 19 6 6.0842 1.6650 4.1864 20 1 5.8362 0.9180 4.9259 21 6 6.3854 2.9516 4.5803 22 7 5.9514 3.4040 5.7364 23 14 7.4101 4.0520 3.4718 24 1 7.5920 5.3757 4.1199 25 1 8.7376 3.4266 3.2438 26 1 6.7160 4.2283 2.1710 27 6 4.9831 2.0530 1.9968 28 6 4.9665 1.6336 0.5250 29 1 -0.3633 -0.9263 0.4452 30 1 -0.3633 0.8486 0.5796 31 1 -0.3634 0.0776 -1.0247 32 1 1.6113 -1.8597 1.2676 33 1 3.1719 -0.8770 1.2679 34 1 2.1449 -2.3008 -3.4161 35 1 4.5787 -1.7067 -5.3032 36 1 3.1690 -2.8366 -5.6745 37 1 1.5527 -0.8955 -5.4431 38 1 2.9621 0.2342 -5.0715 39 1 6.7851 -0.2944 0.6171 40 1 5.6611 -1.6295 0.9667 41 1 6.6936 -0.7460 3.0484 42 1 4.9324 -0.4830 3.0362 43 1 7.0646 1.5727 2.2923 44 1 5.3574 2.8607 6.2776 45 1 4.0241 1.8111 2.4549 46 1 5.1604 3.1262 2.0673 47 1 5.9209 1.8884 0.0640 48 1 4.1622 2.1564 0.0075 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433316475.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:00 Heat of formation + Delta-G solvation = 121.347143 kcal Electronic energy + Delta-G solvation = -27617.645502 eV Core-core repulsion = 24095.999202 eV Total energy + Delta-G solvation = -3521.646300 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.17728 -40.20680 -38.98624 -38.07666 -35.90550 -34.27352 -33.68365 -31.93916 -30.50133 -29.22356 -27.54809 -25.14086 -24.89307 -24.22950 -23.51178 -23.25515 -22.00924 -21.48421 -21.12849 -20.28746 -19.66357 -18.55709 -17.74874 -17.25356 -16.67519 -15.93456 -15.76808 -15.58723 -15.46060 -15.28067 -15.18240 -14.68790 -14.45713 -14.13753 -13.96019 -13.77530 -13.45652 -13.33263 -12.94058 -12.75126 -12.68089 -12.53646 -12.36354 -12.30489 -12.25218 -12.13756 -12.01301 -11.82779 -11.74681 -11.50031 -11.40685 -11.25121 -11.12058 -10.86044 -10.43567 -10.36571 -9.95150 -9.82599 -8.69740 -6.29835 0.50127 1.07428 1.46150 1.50882 1.59381 1.70801 2.48651 2.50316 2.67187 2.92786 3.03237 3.13448 3.47696 3.64738 3.72851 3.76253 3.81725 3.94907 3.96823 4.05442 4.09456 4.24345 4.28781 4.33001 4.37581 4.43554 4.47457 4.66938 4.72069 4.75113 4.79545 4.84980 4.90405 4.92236 4.94195 4.95543 5.02457 5.12099 5.15448 5.20545 5.27472 5.28986 5.38769 5.44388 5.55886 5.65125 5.74593 6.07010 6.14312 6.20161 6.64103 7.42626 7.58044 8.65375 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018199 B = 0.003849 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.174194 B = 7272.804359 C = 8000.625521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.139 4.139 3 H 0.081 0.919 4 C -0.172 4.172 5 C 0.051 3.949 6 H 0.176 0.824 7 N -0.432 5.432 8 C 0.219 3.781 9 C -0.096 4.096 10 C -0.145 4.145 11 C -0.146 4.146 12 N -0.325 5.325 13 N -0.347 5.347 14 C 0.343 3.657 15 N -0.448 5.448 16 C 0.077 3.923 17 C -0.085 4.085 18 C 0.018 3.982 19 C -0.600 4.600 20 H 0.024 0.976 21 C -0.009 4.009 22 N -0.934 5.934 23 Si 1.071 2.929 24 H -0.290 1.290 25 H -0.271 1.271 26 H -0.251 1.251 27 C -0.100 4.100 28 C 0.078 3.922 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.129 0.871 33 H 0.111 0.889 34 H 0.154 0.846 35 H 0.085 0.915 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.077 0.923 39 H 0.038 0.962 40 H 0.080 0.920 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.016 0.984 44 H 0.256 0.744 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.036 0.964 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.294 -12.588 -20.326 27.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.158 4.158 3 H 0.100 0.900 4 C -0.210 4.210 5 C -0.052 4.052 6 H 0.193 0.807 7 N -0.122 5.122 8 C -0.048 4.048 9 C -0.117 4.117 10 C -0.183 4.183 11 C -0.184 4.184 12 N -0.165 5.165 13 N -0.190 5.190 14 C -0.014 4.014 15 N -0.174 5.174 16 C -0.050 4.050 17 C -0.123 4.123 18 C -0.001 4.001 19 C -0.638 4.638 20 H 0.042 0.958 21 C -0.209 4.209 22 N -0.570 5.570 23 Si 0.893 3.107 24 H -0.216 1.216 25 H -0.196 1.196 26 H -0.176 1.176 27 C -0.139 4.139 28 C -0.049 4.049 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.147 0.853 33 H 0.129 0.871 34 H 0.172 0.828 35 H 0.104 0.896 36 H 0.152 0.848 37 H 0.154 0.846 38 H 0.096 0.904 39 H 0.056 0.944 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.034 0.966 44 H 0.065 0.935 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.054 0.946 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.706 -10.875 -20.819 26.705 hybrid contribution -0.669 -1.238 1.324 1.932 sum -13.375 -12.113 -19.495 26.564 Atomic orbital electron populations 1.21379 0.89444 1.03366 1.02996 1.22779 0.97160 0.93909 1.01989 0.90048 1.23978 1.04659 1.01273 0.91061 1.22552 0.84504 1.04257 0.93864 0.80730 1.45901 1.13003 1.44470 1.08832 1.24487 0.94529 1.01956 0.83848 1.20404 1.00589 1.04713 0.85971 1.23091 0.99449 1.00915 0.94796 1.23122 1.02139 0.95898 0.97268 1.73873 1.08079 1.16008 1.18548 1.74560 1.26192 1.21332 0.96965 1.22486 0.85751 1.00586 0.92606 1.58983 1.45912 1.06866 1.05657 1.22141 0.90700 0.97231 0.94923 1.21409 1.01421 0.96914 0.92599 1.18990 0.93674 0.93198 0.94230 1.22091 1.51882 0.97013 0.92777 0.95789 1.26898 0.97032 0.98339 0.98603 1.70960 1.32024 1.38827 1.15145 0.83693 0.76726 0.74791 0.75462 1.21585 1.19611 1.17578 1.21847 1.00664 0.99544 0.91815 1.22118 0.99954 0.84496 0.98375 0.90457 0.91815 0.90726 0.85334 0.87069 0.82850 0.89609 0.84791 0.84610 0.90395 0.94376 0.90160 0.91736 0.92202 0.96627 0.93544 0.92454 0.92732 0.94580 0.91129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 10.19 71.98 0.73 -0.76 16 2 C -0.14 -2.74 6.22 -10.77 -0.07 -2.81 16 3 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 4 C -0.17 -3.57 9.50 30.62 0.29 -3.28 16 5 C 0.05 0.97 6.44 44.99 0.29 1.26 16 6 H 0.18 1.97 7.58 -2.39 -0.02 1.95 16 7 N -0.43 -11.54 3.15 -492.46 -1.55 -13.09 16 8 C 0.22 5.76 7.59 137.64 1.04 6.81 16 9 C -0.10 -1.50 6.01 -11.54 -0.07 -1.57 16 10 C -0.14 -1.95 10.15 30.59 0.31 -1.64 16 11 C -0.15 -1.87 10.23 30.59 0.31 -1.55 16 12 N -0.33 -11.09 11.79 -49.54 -0.58 -11.68 16 13 N -0.35 -13.13 12.19 -58.00 -0.71 -13.84 16 14 C 0.34 11.43 6.18 260.11 1.61 13.03 16 15 N -0.45 -15.02 2.08 -706.13 -1.47 -16.49 16 16 C 0.08 2.64 5.15 86.33 0.44 3.09 16 17 C -0.09 -3.31 5.32 30.65 0.16 -3.15 16 18 C 0.02 0.83 1.76 -11.46 -0.02 0.81 16 19 C -0.60 -33.34 8.77 25.60 0.22 -33.12 16 20 H 0.02 1.45 7.99 -2.91 -0.02 1.43 16 21 C -0.01 -0.53 5.28 84.65 0.45 -0.08 16 22 N -0.93 -57.95 13.70 21.45 0.29 -57.65 16 23 Si 1.07 50.60 26.54 68.60 1.82 52.42 16 24 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 25 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 26 H -0.25 -10.75 5.94 99.48 0.59 -10.15 16 27 C -0.10 -4.20 5.10 30.65 0.16 -4.04 16 28 C 0.08 2.84 5.38 86.33 0.46 3.30 16 29 H 0.08 0.76 7.90 -2.39 -0.02 0.74 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.13 1.97 8.05 -2.39 -0.02 1.95 16 33 H 0.11 3.08 5.43 -2.39 -0.01 3.07 16 34 H 0.15 1.38 7.62 -2.39 -0.02 1.36 16 35 H 0.09 1.62 7.92 -2.39 -0.02 1.60 16 36 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.08 2.49 8.10 -2.39 -0.02 2.48 16 41 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 42 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 43 H 0.02 0.73 6.70 -2.39 -0.02 0.72 16 44 H 0.26 15.98 8.73 -92.71 -0.81 15.17 16 45 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 46 H 0.05 2.40 5.47 -2.39 -0.01 2.38 16 47 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.07 2.43 8.10 -2.39 -0.02 2.41 16 Total: -1.00 -71.56 378.03 4.92 -66.64 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.79 Total: 17.38 kcal Atomic # 6 Polarization: -30.02 SS G_CDS: 6.33 Total: -23.69 kcal Atomic # 7 Polarization: -108.73 SS G_CDS: -4.02 Total: -112.75 kcal Atomic # 14 Polarization: 50.60 SS G_CDS: 1.82 Total: 52.42 kcal Total: -71.56 4.92 -66.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433316475.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.985 kcal (2) G-P(sol) polarization free energy of solvation -71.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds