Wall clock time and date at job start Tue Mar 31 2020 11:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 115.56127 * 2 1 4 4 C 1.52999 * 117.49644 * 214.30837 * 2 1 3 5 5 C 1.52999 * 60.00059 * 252.51646 * 4 2 1 6 6 H 1.09006 * 117.49445 * 252.49239 * 5 4 2 7 7 N 1.46494 * 117.50316 * 107.49510 * 5 4 2 8 8 C 1.36741 * 127.14063 * 178.75816 * 7 5 4 9 9 C 1.50694 * 126.34522 * 359.97438 * 8 7 5 10 10 C 1.53005 * 117.49738 * 120.00332 * 9 8 7 11 11 C 1.52994 * 60.00091 * 107.48879 * 10 9 8 12 12 N 1.30292 * 107.30452 * 180.25784 * 8 7 5 13 13 N 1.28527 * 110.05421 * 359.56250 * 12 8 7 14 14 C 1.31211 * 109.86207 * 0.44570 * 13 12 8 15 15 N 1.38583 * 126.47784 * 179.73319 * 14 13 12 16 16 C 1.46848 * 110.99769 * 273.16940 * 15 14 13 17 17 C 1.53042 * 109.52413 * 185.83575 * 16 15 14 18 18 C 1.53121 * 109.27489 * 300.82426 * 17 16 15 19 19 C 1.50701 * 109.57089 * 177.58935 * 18 17 16 20 20 H 1.07997 * 119.99831 * 240.28188 * 19 18 17 21 21 C 1.37883 * 120.00244 * 60.28437 * 19 18 17 22 22 N 1.31506 * 119.99858 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99982 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47024 * 59.99956 * 23 21 19 25 25 H 1.48499 * 109.46999 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.46922 * 299.99797 * 23 21 19 27 27 C 1.53117 * 109.16526 * 57.65296 * 18 17 16 28 28 C 1.46846 * 110.99731 * 37.37665 * 15 14 13 29 29 H 1.08996 * 109.47239 * 274.31620 * 1 2 3 30 30 H 1.09007 * 109.46630 * 34.31334 * 1 2 3 31 31 H 1.08994 * 109.47227 * 154.30737 * 1 2 3 32 32 H 1.09003 * 117.49376 * 145.02207 * 4 2 1 33 33 H 1.09004 * 117.52104 * 359.97438 * 4 2 1 34 34 H 1.08998 * 115.56471 * 334.31606 * 9 8 7 35 35 H 1.09006 * 117.49785 * 359.97438 * 10 9 8 36 36 H 1.09000 * 117.49822 * 214.98050 * 10 9 8 37 37 H 1.09000 * 117.50012 * 107.48853 * 11 10 9 38 38 H 1.09000 * 117.50285 * 252.51123 * 11 10 9 39 39 H 1.09003 * 109.46551 * 305.84848 * 16 15 14 40 40 H 1.09002 * 109.46429 * 65.82078 * 16 15 14 41 41 H 1.08991 * 109.50501 * 180.87769 * 17 16 15 42 42 H 1.09006 * 109.52994 * 60.77747 * 17 16 15 43 43 H 1.08999 * 109.52322 * 297.74257 * 18 17 16 44 44 H 0.97002 * 120.00227 * 180.02562 * 22 21 19 45 45 H 1.08997 * 109.50708 * 182.40378 * 27 18 17 46 46 H 1.09005 * 109.53770 * 62.30335 * 27 18 17 47 47 H 1.09002 * 109.46334 * 294.18047 * 28 15 14 48 48 H 1.09000 * 109.46206 * 54.15884 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1210 -0.7650 5 6 2.2364 -1.1211 0.7650 6 1 3.1716 -0.8756 1.2683 7 7 1.3961 -2.1122 1.4415 8 6 1.2659 -2.3022 2.7894 9 6 1.9672 -1.5242 3.8728 10 6 1.0950 -0.7651 4.8749 11 6 1.8317 -2.0338 5.3091 12 7 0.4279 -3.2846 2.9631 13 7 0.0158 -3.7188 1.8258 14 6 0.5807 -3.0373 0.8572 15 7 0.3862 -3.2221 -0.5024 16 6 1.2989 -4.2442 -1.0304 17 6 1.1585 -4.3182 -2.5526 18 6 -0.2892 -4.6659 -2.9103 19 6 -0.4489 -4.6823 -4.4088 20 1 -1.1463 -4.0091 -4.8849 21 6 0.2954 -5.5569 -5.1719 22 7 1.1449 -6.3763 -4.5922 23 14 0.0979 -5.5767 -7.0293 24 1 0.4413 -4.2402 -7.5779 25 1 1.0041 -6.5984 -7.6125 26 1 -1.3083 -5.9069 -7.3741 27 6 -1.2228 -3.6124 -2.3078 28 6 -1.0133 -3.5590 -0.7927 29 1 -0.3633 0.0773 1.0247 30 1 -0.3633 0.8489 -0.5794 31 1 -0.3633 -0.9260 -0.4455 32 1 3.1716 -0.8752 -1.2682 33 1 1.6115 -1.8590 -1.2680 34 1 2.9163 -1.0708 3.5871 35 1 0.0140 -0.8282 4.7501 36 1 1.4704 0.1876 5.2483 37 1 2.6917 -1.9158 5.9682 38 1 1.2354 -2.9319 5.4703 39 1 2.3252 -3.9827 -0.7727 40 1 1.0507 -5.2124 -0.5954 41 1 1.8246 -5.0876 -2.9425 42 1 1.4200 -3.3545 -2.9899 43 1 -0.5385 -5.6472 -2.5067 44 1 1.6688 -6.9914 -5.1290 45 1 -2.2579 -3.8777 -2.5229 46 1 -0.9996 -2.6372 -2.7406 47 1 -1.2507 -4.5303 -0.3588 48 1 -1.6664 -2.7997 -0.3625 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433316479.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:04 Heat of formation + Delta-G solvation = 140.340560 kcal Electronic energy + Delta-G solvation = -27900.522049 eV Core-core repulsion = 24379.699366 eV Total energy + Delta-G solvation = -3520.822684 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.89554 -38.68597 -37.86870 -37.21684 -34.02760 -32.83416 -31.49490 -30.13504 -28.94170 -28.45689 -25.82705 -24.14536 -23.70809 -22.59243 -22.34230 -22.22110 -21.18132 -20.16626 -19.63283 -18.59853 -17.19011 -16.62915 -16.30057 -15.92731 -15.65260 -15.11836 -14.64635 -14.50105 -14.23668 -13.81279 -13.17592 -12.96660 -12.84891 -12.63391 -12.51970 -12.33803 -12.19485 -11.74513 -11.61847 -11.38128 -11.37725 -11.25237 -11.14585 -11.03923 -10.89292 -10.79936 -10.61360 -10.48032 -10.32575 -10.18085 -10.05513 -9.62363 -9.41327 -9.11870 -8.88416 -8.79343 -8.35327 -8.07681 -6.02045 -4.07594 1.79228 2.29467 2.92626 3.30345 3.35521 3.37959 3.56276 3.72813 3.93644 4.12282 4.41707 4.46877 4.51449 4.62640 4.69548 4.76719 4.85261 5.22277 5.25786 5.28092 5.35568 5.41787 5.51721 5.60953 5.70613 5.74879 5.78392 5.80324 5.90756 5.95310 5.96358 6.01582 6.09669 6.12654 6.19337 6.27638 6.34412 6.49760 6.52914 6.71992 6.76570 6.90940 7.03486 7.28263 7.33418 7.61274 7.70765 7.94832 8.05246 8.40803 8.94255 8.95821 9.57336 11.04298 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.024113 B = 0.003502 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.897532 B = 7993.275177 C = 8337.895727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.141 4.141 3 H 0.111 0.889 4 C -0.174 4.174 5 C 0.049 3.951 6 H 0.134 0.866 7 N -0.435 5.435 8 C 0.200 3.800 9 C -0.079 4.079 10 C -0.159 4.159 11 C -0.151 4.151 12 N -0.287 5.287 13 N -0.319 5.319 14 C 0.366 3.634 15 N -0.457 5.457 16 C 0.062 3.938 17 C -0.102 4.102 18 C 0.047 3.953 19 C -0.511 4.511 20 H 0.055 0.945 21 C 0.062 3.938 22 N -0.891 5.891 23 Si 0.890 3.110 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.278 1.278 27 C -0.106 4.106 28 C 0.071 3.929 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.154 0.846 34 H 0.119 0.881 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.057 0.943 40 H 0.042 0.958 41 H 0.100 0.900 42 H 0.047 0.953 43 H 0.026 0.974 44 H 0.261 0.739 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.050 0.950 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.349 13.706 14.062 20.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.160 4.160 3 H 0.129 0.871 4 C -0.211 4.211 5 C -0.056 4.056 6 H 0.152 0.848 7 N -0.126 5.126 8 C -0.067 4.067 9 C -0.100 4.100 10 C -0.197 4.197 11 C -0.189 4.189 12 N -0.128 5.128 13 N -0.162 5.162 14 C 0.011 3.989 15 N -0.183 5.183 16 C -0.064 4.064 17 C -0.141 4.141 18 C 0.029 3.971 19 C -0.550 4.550 20 H 0.073 0.927 21 C -0.139 4.139 22 N -0.530 5.530 23 Si 0.718 3.282 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.203 1.203 27 C -0.144 4.144 28 C -0.055 4.055 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.121 0.879 33 H 0.172 0.828 34 H 0.137 0.863 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.128 0.872 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.118 0.882 42 H 0.065 0.935 43 H 0.044 0.956 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.069 0.931 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.716 12.934 14.434 19.734 hybrid contribution 0.808 0.302 -1.333 1.587 sum 4.524 13.237 13.101 19.166 Atomic orbital electron populations 1.21399 0.92182 1.03663 1.01339 1.22747 0.96571 0.94044 1.02656 0.87098 1.24259 1.04016 1.02235 0.90628 1.22005 0.95348 0.93881 0.94338 0.84842 1.45493 1.34600 1.26403 1.06096 1.23519 1.01390 0.99534 0.82234 1.19964 0.99585 1.02986 0.87435 1.23043 0.99227 0.96273 1.01150 1.23011 1.03021 0.99042 0.93782 1.73913 1.11207 1.09263 1.18372 1.74676 1.24431 1.22586 0.94553 1.22717 0.93444 0.90033 0.92728 1.59129 1.08870 1.47266 1.03040 1.22505 0.93400 0.90976 0.99560 1.21760 1.02444 1.01898 0.87971 1.18701 0.90054 0.93207 0.95162 1.21125 1.22648 1.19771 0.91418 0.92674 1.24959 0.95261 0.95325 0.98363 1.69842 1.25399 1.22492 1.35287 0.86689 0.77978 0.77654 0.85850 1.20329 1.21395 1.20340 1.21750 1.00488 1.01363 0.90829 1.22189 0.84439 0.99941 0.98973 0.93224 0.91919 0.90328 0.87864 0.82837 0.86274 0.88278 0.88033 0.88020 0.87218 0.92423 0.93972 0.88165 0.93470 0.95617 0.92945 0.92234 0.92323 0.93143 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 9.34 37.16 0.35 -1.25 16 2 C -0.14 -1.54 6.41 -90.62 -0.58 -2.12 16 3 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 4 C -0.17 -2.15 9.42 -26.73 -0.25 -2.40 16 5 C 0.05 0.58 6.67 -67.93 -0.45 0.12 16 6 H 0.13 1.22 7.92 -51.93 -0.41 0.81 16 7 N -0.43 -6.45 2.68 -107.01 -0.29 -6.74 16 8 C 0.20 2.95 7.59 -154.02 -1.17 1.78 16 9 C -0.08 -0.82 6.03 -91.77 -0.55 -1.37 16 10 C -0.16 -1.37 10.23 -26.73 -0.27 -1.65 16 11 C -0.15 -1.35 10.15 -26.73 -0.27 -1.62 16 12 N -0.29 -5.14 11.79 32.99 0.39 -4.76 16 13 N -0.32 -6.23 11.72 30.32 0.36 -5.88 16 14 C 0.37 6.43 5.59 -318.87 -1.78 4.65 16 15 N -0.46 -7.98 1.23 -174.54 -0.22 -8.20 16 16 C 0.06 1.18 4.47 -3.83 -0.02 1.16 16 17 C -0.10 -2.23 5.07 -26.65 -0.14 -2.37 16 18 C 0.05 1.11 2.16 -91.65 -0.20 0.91 16 19 C -0.51 -13.38 8.56 -34.44 -0.29 -13.67 16 20 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16 21 C 0.06 1.65 5.31 -17.82 -0.09 1.56 16 22 N -0.89 -24.54 11.37 55.43 0.63 -23.91 16 23 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 27 C -0.11 -2.10 5.32 -26.65 -0.14 -2.24 16 28 C 0.07 1.30 4.71 -3.83 -0.02 1.28 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 1.16 5.39 -51.93 -0.28 0.88 16 32 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.15 2.36 3.91 -51.93 -0.20 2.16 16 34 H 0.12 0.98 7.92 -51.93 -0.41 0.56 16 35 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.11 1.18 7.92 -51.93 -0.41 0.76 16 39 H 0.06 1.03 7.95 -51.93 -0.41 0.62 16 40 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.10 2.47 6.17 -51.93 -0.32 2.15 16 42 H 0.05 1.01 7.77 -51.93 -0.40 0.61 16 43 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 45 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.05 0.99 8.06 -51.93 -0.42 0.57 16 48 H 0.06 1.05 7.78 -51.93 -0.40 0.65 16 LS Contribution 373.09 15.07 5.62 5.62 Total: -1.00 -29.19 373.09 -12.28 -41.47 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -7.87 Total: 3.91 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -5.89 Total: -17.21 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: 0.87 Total: -49.47 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.19 -12.28 -41.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433316479.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.809 kcal (2) G-P(sol) polarization free energy of solvation -29.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds