Wall clock time and date at job start Tue Mar 31 2020 11:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 115.56127 * 2 1 4 4 C 1.52999 * 117.49644 * 214.30837 * 2 1 3 5 5 C 1.52999 * 60.00059 * 252.51646 * 4 2 1 6 6 H 1.09006 * 117.49445 * 252.49239 * 5 4 2 7 7 N 1.46494 * 117.50316 * 107.49510 * 5 4 2 8 8 C 1.36741 * 127.14063 * 178.75816 * 7 5 4 9 9 C 1.50694 * 126.34522 * 359.97438 * 8 7 5 10 10 C 1.53005 * 117.49738 * 120.00332 * 9 8 7 11 11 C 1.52994 * 60.00091 * 107.48879 * 10 9 8 12 12 N 1.30292 * 107.30452 * 180.25784 * 8 7 5 13 13 N 1.28527 * 110.05421 * 359.56250 * 12 8 7 14 14 C 1.31211 * 109.86207 * 0.44570 * 13 12 8 15 15 N 1.38583 * 126.47784 * 179.73319 * 14 13 12 16 16 C 1.46848 * 110.99769 * 273.16940 * 15 14 13 17 17 C 1.53042 * 109.52413 * 185.83575 * 16 15 14 18 18 C 1.53121 * 109.27489 * 300.82426 * 17 16 15 19 19 C 1.50701 * 109.57089 * 177.58935 * 18 17 16 20 20 H 1.07997 * 119.99831 * 240.28188 * 19 18 17 21 21 C 1.37883 * 120.00244 * 60.28437 * 19 18 17 22 22 N 1.31506 * 119.99858 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99982 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47024 * 59.99956 * 23 21 19 25 25 H 1.48499 * 109.46999 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.46922 * 299.99797 * 23 21 19 27 27 C 1.53117 * 109.16526 * 57.65296 * 18 17 16 28 28 C 1.46846 * 110.99731 * 37.37665 * 15 14 13 29 29 H 1.08996 * 109.47239 * 274.31620 * 1 2 3 30 30 H 1.09007 * 109.46630 * 34.31334 * 1 2 3 31 31 H 1.08994 * 109.47227 * 154.30737 * 1 2 3 32 32 H 1.09003 * 117.49376 * 145.02207 * 4 2 1 33 33 H 1.09004 * 117.52104 * 359.97438 * 4 2 1 34 34 H 1.08998 * 115.56471 * 334.31606 * 9 8 7 35 35 H 1.09006 * 117.49785 * 359.97438 * 10 9 8 36 36 H 1.09000 * 117.49822 * 214.98050 * 10 9 8 37 37 H 1.09000 * 117.50012 * 107.48853 * 11 10 9 38 38 H 1.09000 * 117.50285 * 252.51123 * 11 10 9 39 39 H 1.09003 * 109.46551 * 305.84848 * 16 15 14 40 40 H 1.09002 * 109.46429 * 65.82078 * 16 15 14 41 41 H 1.08991 * 109.50501 * 180.87769 * 17 16 15 42 42 H 1.09006 * 109.52994 * 60.77747 * 17 16 15 43 43 H 1.08999 * 109.52322 * 297.74257 * 18 17 16 44 44 H 0.97002 * 120.00227 * 180.02562 * 22 21 19 45 45 H 1.08997 * 109.50708 * 182.40378 * 27 18 17 46 46 H 1.09005 * 109.53770 * 62.30335 * 27 18 17 47 47 H 1.09002 * 109.46334 * 294.18047 * 28 15 14 48 48 H 1.09000 * 109.46206 * 54.15884 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1210 -0.7650 5 6 2.2364 -1.1211 0.7650 6 1 3.1716 -0.8756 1.2683 7 7 1.3961 -2.1122 1.4415 8 6 1.2659 -2.3022 2.7894 9 6 1.9672 -1.5242 3.8728 10 6 1.0950 -0.7651 4.8749 11 6 1.8317 -2.0338 5.3091 12 7 0.4279 -3.2846 2.9631 13 7 0.0158 -3.7188 1.8258 14 6 0.5807 -3.0373 0.8572 15 7 0.3862 -3.2221 -0.5024 16 6 1.2989 -4.2442 -1.0304 17 6 1.1585 -4.3182 -2.5526 18 6 -0.2892 -4.6659 -2.9103 19 6 -0.4489 -4.6823 -4.4088 20 1 -1.1463 -4.0091 -4.8849 21 6 0.2954 -5.5569 -5.1719 22 7 1.1449 -6.3763 -4.5922 23 14 0.0979 -5.5767 -7.0293 24 1 0.4413 -4.2402 -7.5779 25 1 1.0041 -6.5984 -7.6125 26 1 -1.3083 -5.9069 -7.3741 27 6 -1.2228 -3.6124 -2.3078 28 6 -1.0133 -3.5590 -0.7927 29 1 -0.3633 0.0773 1.0247 30 1 -0.3633 0.8489 -0.5794 31 1 -0.3633 -0.9260 -0.4455 32 1 3.1716 -0.8752 -1.2682 33 1 1.6115 -1.8590 -1.2680 34 1 2.9163 -1.0708 3.5871 35 1 0.0140 -0.8282 4.7501 36 1 1.4704 0.1876 5.2483 37 1 2.6917 -1.9158 5.9682 38 1 1.2354 -2.9319 5.4703 39 1 2.3252 -3.9827 -0.7727 40 1 1.0507 -5.2124 -0.5954 41 1 1.8246 -5.0876 -2.9425 42 1 1.4200 -3.3545 -2.9899 43 1 -0.5385 -5.6472 -2.5067 44 1 1.6688 -6.9914 -5.1290 45 1 -2.2579 -3.8777 -2.5229 46 1 -0.9996 -2.6372 -2.7406 47 1 -1.2507 -4.5303 -0.3588 48 1 -1.6664 -2.7997 -0.3625 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433316479.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:03 Heat of formation + Delta-G solvation = 129.224035 kcal Electronic energy + Delta-G solvation = -27901.004098 eV Core-core repulsion = 24379.699366 eV Total energy + Delta-G solvation = -3521.304732 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.13882 -40.14691 -38.92189 -38.03911 -35.81442 -34.01064 -33.31220 -31.78282 -30.32468 -29.44753 -27.64794 -25.20138 -24.98730 -23.89905 -23.86702 -23.24800 -22.14566 -21.49115 -20.67300 -20.23907 -18.50091 -18.13087 -17.72931 -17.22120 -16.59404 -16.51892 -16.10986 -15.72676 -15.39695 -15.29784 -14.73301 -14.44211 -14.19314 -14.15081 -13.82265 -13.43122 -13.23703 -13.21068 -12.93145 -12.76631 -12.61487 -12.46475 -12.39862 -12.32828 -12.28462 -12.16257 -12.00360 -12.00193 -11.68216 -11.45592 -11.38296 -11.05998 -10.93414 -10.74765 -10.42734 -10.39158 -10.17891 -9.48660 -8.06514 -6.19371 0.60187 1.15285 1.45082 1.45589 1.53023 1.65959 2.45865 2.56909 2.69101 2.94929 3.19423 3.21501 3.53191 3.66587 3.77430 3.84158 3.91747 3.98029 4.08202 4.12262 4.16445 4.33716 4.41079 4.43714 4.45525 4.56712 4.63445 4.71999 4.78483 4.80463 4.86148 4.92454 4.93107 4.96395 4.97396 5.05584 5.11832 5.17905 5.20183 5.30079 5.34124 5.47087 5.51844 5.57667 5.68590 5.71807 5.99730 6.13314 6.26848 6.39212 6.91148 7.48763 7.66271 8.98324 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.024113 B = 0.003502 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.897532 B = 7993.275177 C = 8337.895727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.125 4.125 3 H 0.147 0.853 4 C -0.188 4.188 5 C 0.040 3.960 6 H 0.171 0.829 7 N -0.431 5.431 8 C 0.216 3.784 9 C -0.094 4.094 10 C -0.143 4.143 11 C -0.148 4.148 12 N -0.327 5.327 13 N -0.358 5.358 14 C 0.352 3.648 15 N -0.438 5.438 16 C 0.079 3.921 17 C -0.086 4.086 18 C 0.044 3.956 19 C -0.529 4.529 20 H 0.056 0.944 21 C 0.015 3.985 22 N -0.918 5.918 23 Si 0.952 3.048 24 H -0.268 1.268 25 H -0.288 1.288 26 H -0.275 1.275 27 C -0.093 4.093 28 C 0.081 3.919 29 H 0.041 0.959 30 H 0.077 0.923 31 H 0.050 0.950 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.152 0.848 35 H 0.078 0.922 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.015 0.985 41 H 0.070 0.930 42 H 0.051 0.949 43 H -0.014 1.014 44 H 0.260 0.740 45 H 0.062 0.938 46 H 0.066 0.934 47 H 0.029 0.971 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.964 17.025 14.807 23.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.143 4.143 3 H 0.164 0.836 4 C -0.225 4.225 5 C -0.063 4.063 6 H 0.188 0.812 7 N -0.121 5.121 8 C -0.052 4.052 9 C -0.115 4.115 10 C -0.182 4.182 11 C -0.185 4.185 12 N -0.166 5.166 13 N -0.201 5.201 14 C -0.005 4.005 15 N -0.163 5.163 16 C -0.048 4.048 17 C -0.124 4.124 18 C 0.026 3.974 19 C -0.567 4.567 20 H 0.074 0.926 21 C -0.184 4.184 22 N -0.557 5.557 23 Si 0.778 3.222 24 H -0.193 1.193 25 H -0.213 1.213 26 H -0.201 1.201 27 C -0.131 4.131 28 C -0.046 4.046 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.170 0.830 35 H 0.097 0.903 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.034 0.966 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.005 0.995 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.047 0.953 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.325 16.273 15.185 22.886 hybrid contribution 0.281 -0.717 -1.485 1.673 sum 5.606 15.556 13.701 21.474 Atomic orbital electron populations 1.21370 0.93632 1.02857 1.00774 1.22850 0.95427 0.95117 1.00952 0.83555 1.24186 1.04822 1.02526 0.90989 1.22533 0.96294 0.93350 0.94118 0.81231 1.45683 1.34104 1.26206 1.06121 1.24418 0.99568 0.98080 0.83099 1.20362 1.00879 1.03659 0.86583 1.23107 0.97992 0.97566 0.99511 1.23082 1.03847 0.98351 0.93266 1.73838 1.13404 1.11369 1.18001 1.74562 1.25868 1.24076 0.95622 1.22590 0.94712 0.91155 0.92061 1.59119 1.07753 1.45869 1.03571 1.22188 0.94650 0.90387 0.97578 1.21438 1.00502 1.00782 0.89698 1.18659 0.92022 0.92450 0.94279 1.21477 1.22575 1.19822 0.92783 0.92606 1.25699 0.95034 0.95065 1.02568 1.69993 1.26057 1.23009 1.36653 0.85713 0.77824 0.77890 0.80816 1.19346 1.21333 1.20062 1.21565 0.99672 1.00274 0.91577 1.22012 0.85538 0.99278 0.97731 0.94017 0.90374 0.93105 0.85697 0.86025 0.83048 0.90319 0.84640 0.84925 0.89732 0.90910 0.96647 0.91190 0.93051 0.99546 0.93102 0.91974 0.91528 0.95277 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 9.34 71.98 0.67 -2.27 16 2 C -0.12 -2.28 6.41 -10.79 -0.07 -2.35 16 3 H 0.15 1.72 8.14 -2.39 -0.02 1.70 16 4 C -0.19 -4.16 9.42 30.59 0.29 -3.87 16 5 C 0.04 0.81 6.67 44.99 0.30 1.11 16 6 H 0.17 2.21 7.92 -2.38 -0.02 2.19 16 7 N -0.43 -12.19 2.68 -492.48 -1.32 -13.51 16 8 C 0.22 6.10 7.59 137.64 1.04 7.15 16 9 C -0.09 -1.65 6.03 -11.54 -0.07 -1.72 16 10 C -0.14 -2.03 10.23 30.59 0.31 -1.72 16 11 C -0.15 -2.27 10.15 30.59 0.31 -1.96 16 12 N -0.33 -11.89 11.79 -49.54 -0.58 -12.47 16 13 N -0.36 -14.47 11.72 -58.00 -0.68 -15.15 16 14 C 0.35 12.50 5.59 260.11 1.45 13.95 16 15 N -0.44 -15.66 1.23 -706.13 -0.87 -16.53 16 16 C 0.08 3.13 4.47 86.33 0.39 3.52 16 17 C -0.09 -3.89 5.07 30.65 0.16 -3.73 16 18 C 0.04 2.18 2.16 -11.46 -0.02 2.16 16 19 C -0.53 -28.27 8.56 25.60 0.22 -28.05 16 20 H 0.06 2.91 7.74 -2.91 -0.02 2.89 16 21 C 0.01 0.81 5.31 84.66 0.45 1.26 16 22 N -0.92 -52.09 11.37 21.45 0.24 -51.84 16 23 Si 0.95 42.78 29.54 68.60 2.03 44.80 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 26 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 27 C -0.09 -3.77 5.32 30.65 0.16 -3.61 16 28 C 0.08 3.09 4.71 86.33 0.41 3.49 16 29 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.05 1.45 5.39 -2.39 -0.01 1.44 16 32 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.12 3.62 3.91 -2.38 -0.01 3.61 16 34 H 0.15 1.69 7.92 -2.39 -0.02 1.67 16 35 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.08 1.76 7.92 -2.39 -0.02 1.74 16 39 H 0.07 2.65 7.95 -2.39 -0.02 2.64 16 40 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.07 3.62 6.17 -2.39 -0.01 3.61 16 42 H 0.05 2.25 7.77 -2.38 -0.02 2.23 16 43 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 44 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 45 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 46 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 47 H 0.03 1.22 8.06 -2.39 -0.02 1.20 16 48 H 0.08 2.65 7.78 -2.39 -0.02 2.63 16 Total: -1.00 -67.45 373.09 5.76 -61.69 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.94 Total: 19.65 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: 6.00 Total: -16.63 kcal Atomic # 7 Polarization: -106.30 SS G_CDS: -3.21 Total: -109.51 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -67.45 5.76 -61.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433316479.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.912 kcal (2) G-P(sol) polarization free energy of solvation -67.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds