Wall clock time and date at job start Tue Mar 31 2020 11:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 115.54869 * 2 1 4 4 C 1.53077 * 117.51979 * 145.71946 * 2 1 3 5 5 C 1.52998 * 117.50281 * 214.33237 * 2 1 3 6 6 H 1.09003 * 117.50306 * 144.99167 * 5 2 1 7 7 N 1.46499 * 117.49725 * 359.97438 * 5 2 1 8 8 C 1.36737 * 127.14044 * 68.70150 * 7 5 2 9 9 C 1.50706 * 126.34638 * 0.05863 * 8 7 5 10 10 C 1.52996 * 117.50086 * 188.74939 * 9 8 7 11 11 C 1.52999 * 117.49968 * 120.08466 * 9 8 7 12 12 N 1.30291 * 107.30999 * 180.02562 * 8 7 5 13 13 N 1.28537 * 110.05355 * 359.72893 * 12 8 7 14 14 C 1.31217 * 109.85546 * 0.45243 * 13 12 8 15 15 N 1.38578 * 126.47120 * 179.82583 * 14 13 12 16 16 C 1.46849 * 110.99701 * 323.37176 * 15 14 13 17 17 C 1.53041 * 109.52190 * 185.83757 * 16 15 14 18 18 C 1.53116 * 109.28032 * 300.82889 * 17 16 15 19 19 C 1.50699 * 109.51879 * 177.55981 * 18 17 16 20 20 H 1.07994 * 120.00256 * 334.45207 * 19 18 17 21 21 C 1.37884 * 119.99884 * 154.45509 * 19 18 17 22 22 N 1.31515 * 119.99951 * 358.28292 * 21 19 18 23 23 Si 1.86803 * 119.99950 * 178.27813 * 21 19 18 24 24 H 1.48497 * 109.46901 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.47149 * 240.00193 * 23 21 19 26 26 H 1.48495 * 109.46631 * 120.00274 * 23 21 19 27 27 C 1.53116 * 109.21770 * 57.62052 * 18 17 16 28 28 C 1.46842 * 111.00471 * 87.58632 * 15 14 13 29 29 H 1.09009 * 109.46969 * 205.66888 * 1 2 3 30 30 H 1.08995 * 109.47557 * 325.66898 * 1 2 3 31 31 H 1.08996 * 109.47468 * 85.67501 * 1 2 3 32 32 H 1.09000 * 117.50854 * 0.02562 * 4 2 1 33 33 H 1.08992 * 117.49733 * 214.96804 * 4 2 1 34 34 H 1.09002 * 115.54568 * 334.41782 * 9 8 7 35 35 H 1.09007 * 117.49595 * 359.97438 * 10 9 8 36 36 H 1.08997 * 117.50403 * 145.02022 * 10 9 8 37 37 H 1.08994 * 117.49829 * 214.98283 * 11 9 8 38 38 H 1.09000 * 117.49670 * 359.97438 * 11 9 8 39 39 H 1.08998 * 109.45658 * 65.83112 * 16 15 14 40 40 H 1.08996 * 109.45851 * 305.85400 * 16 15 14 41 41 H 1.08997 * 109.50095 * 180.87942 * 17 16 15 42 42 H 1.09005 * 109.53157 * 60.79042 * 17 16 15 43 43 H 1.09002 * 109.52108 * 297.68250 * 18 17 16 44 44 H 0.97002 * 119.99742 * 5.44257 * 22 21 19 45 45 H 1.09003 * 109.50007 * 62.31495 * 27 18 17 46 46 H 1.08996 * 109.50685 * 182.43459 * 27 18 17 47 47 H 1.09004 * 109.46348 * 294.18021 * 28 15 14 48 48 H 1.09007 * 109.46073 * 54.15403 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0000 0.9834 0.0000 4 6 2.2373 -1.1217 0.7646 5 6 2.2365 -1.1206 -0.7654 6 1 3.1714 -0.8745 -1.2690 7 7 1.3962 -2.1119 -1.4417 8 6 0.5980 -1.9105 -2.5335 9 6 0.4141 -0.6134 -3.2784 10 6 -0.6813 -0.5605 -4.3452 11 6 0.7917 -0.5905 -4.7609 12 7 0.0262 -3.0479 -2.8108 13 7 0.4103 -3.9489 -1.9784 14 6 1.2473 -3.4278 -1.1125 15 7 1.8675 -4.0902 -0.0651 16 6 0.9682 -5.0839 0.5352 17 6 1.6305 -5.6904 1.7744 18 6 2.9523 -6.3491 1.3699 19 6 3.6381 -6.8959 2.5953 20 1 3.4378 -6.4635 3.5645 21 6 4.5213 -7.9483 2.4792 22 7 4.7396 -8.4969 1.3041 23 14 5.4078 -8.5948 3.9911 24 1 4.9903 -7.8123 5.1820 25 1 6.8744 -8.4614 3.7997 26 1 5.0630 -10.0250 4.1932 27 6 3.8521 -5.3052 0.7028 28 6 3.1248 -4.7087 -0.5044 29 1 -0.3633 -0.9263 0.4452 30 1 -0.3634 0.8486 0.5795 31 1 -0.3634 0.0775 -1.0247 32 1 1.6125 -1.8600 1.2674 33 1 3.1724 -0.8759 1.2677 34 1 0.5962 0.2915 -2.6987 35 1 -1.2688 -1.4640 -4.5086 36 1 -1.2196 0.3793 -4.4677 37 1 1.2217 0.3295 -5.1566 38 1 1.1734 -1.5135 -5.1973 39 1 0.7626 -5.8720 -0.1891 40 1 0.0338 -4.6015 0.8221 41 1 0.9693 -6.4391 2.2107 42 1 1.8238 -4.9053 2.5054 43 1 2.7554 -7.1610 0.6698 44 1 4.3413 -8.1122 0.5077 45 1 4.0815 -4.5134 1.4160 46 1 4.7772 -5.7788 0.3741 47 1 2.9090 -5.4986 -1.2239 48 1 3.7567 -3.9539 -0.9724 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433316481.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:07 Heat of formation + Delta-G solvation = 129.754224 kcal Electronic energy + Delta-G solvation = -27590.875291 eV Core-core repulsion = 24069.593549 eV Total energy + Delta-G solvation = -3521.281741 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.94412 -38.57260 -38.25405 -37.27298 -34.28107 -32.92507 -31.44789 -30.24492 -29.15630 -28.64403 -25.44225 -24.16669 -23.69872 -22.65161 -22.40571 -22.38701 -21.36147 -20.35790 -19.70559 -18.84638 -17.36540 -16.90080 -16.67724 -16.26232 -15.57730 -15.20875 -14.78703 -14.16225 -13.84783 -13.73175 -13.61521 -13.48896 -13.08778 -12.72015 -12.63997 -12.57006 -12.30408 -11.80455 -11.78022 -11.72183 -11.42554 -11.23541 -11.08049 -10.93993 -10.88918 -10.79009 -10.77877 -10.60368 -10.47179 -10.20944 -10.12439 -9.81298 -9.70259 -9.23959 -8.96792 -8.43918 -8.33306 -8.17245 -6.33981 -4.05824 1.74999 2.20411 2.85877 3.21203 3.43629 3.46523 3.60065 3.66420 3.88319 4.05616 4.28124 4.36410 4.52361 4.52712 4.63106 4.65610 4.79826 4.92605 5.18492 5.27569 5.33087 5.37785 5.38713 5.44894 5.55148 5.57270 5.63980 5.64889 5.68250 5.83110 5.88607 5.88776 5.91599 5.95316 6.00733 6.03842 6.13194 6.14159 6.42036 6.46887 6.65757 6.77284 6.85934 7.03469 7.14818 7.45770 7.53189 7.64640 8.24157 8.45813 8.87406 8.89120 9.66559 11.04354 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.023255 B = 0.003330 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.744745 B = 8407.125329 C = 8901.255639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.148 4.148 3 H 0.119 0.881 4 C -0.139 4.139 5 C 0.055 3.945 6 H 0.132 0.868 7 N -0.439 5.439 8 C 0.205 3.795 9 C -0.081 4.081 10 C -0.150 4.150 11 C -0.161 4.161 12 N -0.288 5.288 13 N -0.318 5.318 14 C 0.367 3.633 15 N -0.455 5.455 16 C 0.072 3.928 17 C -0.098 4.098 18 C 0.028 3.972 19 C -0.590 4.590 20 H 0.049 0.951 21 C 0.019 3.981 22 N -0.915 5.915 23 Si 1.070 2.930 24 H -0.290 1.290 25 H -0.288 1.288 26 H -0.288 1.288 27 C -0.101 4.101 28 C 0.067 3.933 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.124 0.876 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.049 0.951 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.030 0.970 44 H 0.270 0.730 45 H 0.057 0.943 46 H 0.062 0.938 47 H 0.040 0.960 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.595 21.109 -6.629 23.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.167 4.167 3 H 0.137 0.863 4 C -0.177 4.177 5 C -0.050 4.050 6 H 0.149 0.851 7 N -0.131 5.131 8 C -0.061 4.061 9 C -0.102 4.102 10 C -0.188 4.188 11 C -0.199 4.199 12 N -0.128 5.128 13 N -0.162 5.162 14 C 0.011 3.989 15 N -0.181 5.181 16 C -0.054 4.054 17 C -0.136 4.136 18 C 0.009 3.991 19 C -0.628 4.628 20 H 0.068 0.932 21 C -0.185 4.185 22 N -0.551 5.551 23 Si 0.899 3.101 24 H -0.216 1.216 25 H -0.215 1.215 26 H -0.214 1.214 27 C -0.139 4.139 28 C -0.059 4.059 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.141 0.859 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.048 0.952 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.058 0.942 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.290 19.198 -6.404 21.193 hybrid contribution -0.191 1.610 -0.401 1.670 sum -6.481 20.808 -6.805 22.831 Atomic orbital electron populations 1.21438 0.92201 1.02451 1.02462 1.22853 0.96327 0.94594 1.02957 0.86339 1.23471 1.03484 0.99820 0.90907 1.21971 0.95533 0.93483 0.94004 0.85072 1.45491 1.34878 1.08447 1.24318 1.23519 0.94993 0.97462 0.90169 1.20084 1.07941 0.91601 0.90558 1.23027 0.91667 1.04290 0.99839 1.23076 0.98597 1.03859 0.94375 1.73928 1.21639 0.96673 1.20575 1.74707 1.15332 1.23037 1.03122 1.22702 0.98481 0.82828 0.94884 1.58846 1.05816 1.30803 1.22671 1.22199 0.93661 0.92217 0.97348 1.21654 0.98595 0.98884 0.94506 1.18914 0.90679 0.92874 0.96595 1.21965 1.27576 1.19781 0.93473 0.93241 1.25795 0.95856 0.94195 1.02651 1.70736 1.44705 1.40575 0.99069 0.83527 0.76145 0.76039 0.74363 1.21556 1.21498 1.21397 1.21833 0.98937 0.99051 0.94101 1.22340 0.87875 0.96602 0.99093 0.92507 0.91498 0.91661 0.86609 0.87042 0.85871 0.87225 0.87974 0.87971 0.88255 0.93284 0.91949 0.91955 0.92465 0.95152 0.91816 0.92461 0.91956 0.94170 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 9.36 37.16 0.35 -0.83 16 2 C -0.15 -1.27 6.28 -90.58 -0.57 -1.83 16 3 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.14 -1.47 9.43 -26.69 -0.25 -1.72 16 5 C 0.05 0.60 6.43 -67.93 -0.44 0.16 16 6 H 0.13 1.25 8.14 -51.93 -0.42 0.83 16 7 N -0.44 -6.25 2.62 -107.01 -0.28 -6.53 16 8 C 0.21 2.90 6.76 -154.02 -1.04 1.86 16 9 C -0.08 -0.80 5.09 -91.77 -0.47 -1.27 16 10 C -0.15 -1.29 10.15 -26.69 -0.27 -1.56 16 11 C -0.16 -1.36 10.24 -26.69 -0.27 -1.64 16 12 N -0.29 -5.06 11.79 32.99 0.39 -4.67 16 13 N -0.32 -6.17 11.70 30.32 0.35 -5.82 16 14 C 0.37 6.40 6.49 -318.87 -2.07 4.33 16 15 N -0.46 -8.06 3.74 -174.54 -0.65 -8.71 16 16 C 0.07 1.35 5.10 -3.83 -0.02 1.33 16 17 C -0.10 -2.01 5.36 -26.65 -0.14 -2.16 16 18 C 0.03 0.67 1.84 -91.65 -0.17 0.50 16 19 C -0.59 -15.89 8.32 -34.44 -0.29 -16.18 16 20 H 0.05 1.34 7.81 -52.49 -0.41 0.93 16 21 C 0.02 0.53 5.46 -17.82 -0.10 0.43 16 22 N -0.91 -27.05 13.61 55.43 0.75 -26.29 16 23 Si 1.07 24.84 29.90 -169.99 -5.08 19.76 16 24 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 27 C -0.10 -2.15 5.35 -26.65 -0.14 -2.30 16 28 C 0.07 1.27 5.39 -3.83 -0.02 1.25 16 29 H 0.06 0.66 7.90 -51.92 -0.41 0.25 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.60 5.29 -51.93 -0.27 0.33 16 32 H 0.12 1.52 7.53 -51.93 -0.39 1.13 16 33 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.12 0.98 6.84 -51.93 -0.35 0.62 16 35 H 0.11 1.13 7.92 -51.92 -0.41 0.72 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 0.99 8.06 -51.93 -0.42 0.57 16 40 H 0.06 1.10 8.10 -51.93 -0.42 0.68 16 41 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.03 0.81 6.76 -51.93 -0.35 0.45 16 44 H 0.27 7.96 6.61 -40.82 -0.27 7.69 16 45 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 46 H 0.06 1.45 8.06 -51.93 -0.42 1.03 16 47 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.06 0.99 8.10 -51.92 -0.42 0.57 16 LS Contribution 380.27 15.07 5.73 5.73 Total: -1.00 -31.30 380.27 -12.70 -43.99 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -8.00 Total: 2.14 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -5.91 Total: -19.61 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: 0.56 Total: -52.02 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -5.08 Total: 19.76 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.30 -12.70 -43.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433316481.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.749 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds