Wall clock time and date at job start Tue Mar 31 2020 11:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 115.54869 * 2 1 4 4 C 1.53077 * 117.51979 * 145.71946 * 2 1 3 5 5 C 1.52998 * 117.50281 * 214.33237 * 2 1 3 6 6 H 1.09003 * 117.50306 * 144.99167 * 5 2 1 7 7 N 1.46499 * 117.49725 * 359.97438 * 5 2 1 8 8 C 1.36737 * 127.14044 * 68.70150 * 7 5 2 9 9 C 1.50706 * 126.34638 * 0.05863 * 8 7 5 10 10 C 1.52996 * 117.50086 * 188.74939 * 9 8 7 11 11 C 1.52999 * 117.49968 * 120.08466 * 9 8 7 12 12 N 1.30291 * 107.30999 * 180.02562 * 8 7 5 13 13 N 1.28537 * 110.05355 * 359.72893 * 12 8 7 14 14 C 1.31217 * 109.85546 * 0.45243 * 13 12 8 15 15 N 1.38578 * 126.47120 * 179.82583 * 14 13 12 16 16 C 1.46849 * 110.99701 * 323.37176 * 15 14 13 17 17 C 1.53041 * 109.52190 * 185.83757 * 16 15 14 18 18 C 1.53116 * 109.28032 * 300.82889 * 17 16 15 19 19 C 1.50699 * 109.51879 * 177.55981 * 18 17 16 20 20 H 1.07994 * 120.00256 * 334.45207 * 19 18 17 21 21 C 1.37884 * 119.99884 * 154.45509 * 19 18 17 22 22 N 1.31515 * 119.99951 * 358.28292 * 21 19 18 23 23 Si 1.86803 * 119.99950 * 178.27813 * 21 19 18 24 24 H 1.48497 * 109.46901 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.47149 * 240.00193 * 23 21 19 26 26 H 1.48495 * 109.46631 * 120.00274 * 23 21 19 27 27 C 1.53116 * 109.21770 * 57.62052 * 18 17 16 28 28 C 1.46842 * 111.00471 * 87.58632 * 15 14 13 29 29 H 1.09009 * 109.46969 * 205.66888 * 1 2 3 30 30 H 1.08995 * 109.47557 * 325.66898 * 1 2 3 31 31 H 1.08996 * 109.47468 * 85.67501 * 1 2 3 32 32 H 1.09000 * 117.50854 * 0.02562 * 4 2 1 33 33 H 1.08992 * 117.49733 * 214.96804 * 4 2 1 34 34 H 1.09002 * 115.54568 * 334.41782 * 9 8 7 35 35 H 1.09007 * 117.49595 * 359.97438 * 10 9 8 36 36 H 1.08997 * 117.50403 * 145.02022 * 10 9 8 37 37 H 1.08994 * 117.49829 * 214.98283 * 11 9 8 38 38 H 1.09000 * 117.49670 * 359.97438 * 11 9 8 39 39 H 1.08998 * 109.45658 * 65.83112 * 16 15 14 40 40 H 1.08996 * 109.45851 * 305.85400 * 16 15 14 41 41 H 1.08997 * 109.50095 * 180.87942 * 17 16 15 42 42 H 1.09005 * 109.53157 * 60.79042 * 17 16 15 43 43 H 1.09002 * 109.52108 * 297.68250 * 18 17 16 44 44 H 0.97002 * 119.99742 * 5.44257 * 22 21 19 45 45 H 1.09003 * 109.50007 * 62.31495 * 27 18 17 46 46 H 1.08996 * 109.50685 * 182.43459 * 27 18 17 47 47 H 1.09004 * 109.46348 * 294.18021 * 28 15 14 48 48 H 1.09007 * 109.46073 * 54.15403 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0000 0.9834 0.0000 4 6 2.2373 -1.1217 0.7646 5 6 2.2365 -1.1206 -0.7654 6 1 3.1714 -0.8745 -1.2690 7 7 1.3962 -2.1119 -1.4417 8 6 0.5980 -1.9105 -2.5335 9 6 0.4141 -0.6134 -3.2784 10 6 -0.6813 -0.5605 -4.3452 11 6 0.7917 -0.5905 -4.7609 12 7 0.0262 -3.0479 -2.8108 13 7 0.4103 -3.9489 -1.9784 14 6 1.2473 -3.4278 -1.1125 15 7 1.8675 -4.0902 -0.0651 16 6 0.9682 -5.0839 0.5352 17 6 1.6305 -5.6904 1.7744 18 6 2.9523 -6.3491 1.3699 19 6 3.6381 -6.8959 2.5953 20 1 3.4378 -6.4635 3.5645 21 6 4.5213 -7.9483 2.4792 22 7 4.7396 -8.4969 1.3041 23 14 5.4078 -8.5948 3.9911 24 1 4.9903 -7.8123 5.1820 25 1 6.8744 -8.4614 3.7997 26 1 5.0630 -10.0250 4.1932 27 6 3.8521 -5.3052 0.7028 28 6 3.1248 -4.7087 -0.5044 29 1 -0.3633 -0.9263 0.4452 30 1 -0.3634 0.8486 0.5795 31 1 -0.3634 0.0775 -1.0247 32 1 1.6125 -1.8600 1.2674 33 1 3.1724 -0.8759 1.2677 34 1 0.5962 0.2915 -2.6987 35 1 -1.2688 -1.4640 -4.5086 36 1 -1.2196 0.3793 -4.4677 37 1 1.2217 0.3295 -5.1566 38 1 1.1734 -1.5135 -5.1973 39 1 0.7626 -5.8720 -0.1891 40 1 0.0338 -4.6015 0.8221 41 1 0.9693 -6.4391 2.2107 42 1 1.8238 -4.9053 2.5054 43 1 2.7554 -7.1610 0.6698 44 1 4.3413 -8.1122 0.5077 45 1 4.0815 -4.5134 1.4160 46 1 4.7772 -5.7788 0.3741 47 1 2.9090 -5.4986 -1.2239 48 1 3.7567 -3.9539 -0.9724 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433316481.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:06 Heat of formation + Delta-G solvation = 115.626252 kcal Electronic energy + Delta-G solvation = -27591.487926 eV Core-core repulsion = 24069.593549 eV Total energy + Delta-G solvation = -3521.894376 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.16236 -40.15621 -39.10830 -38.07909 -36.11435 -34.08170 -33.27094 -31.92266 -30.37850 -29.57147 -27.29969 -25.23374 -24.94254 -24.05281 -24.02331 -23.28801 -22.16925 -21.71711 -20.82822 -20.36059 -18.91786 -18.33353 -17.75163 -17.48222 -16.60535 -16.27960 -15.80339 -15.68912 -15.65492 -15.38849 -15.23279 -14.44831 -14.26070 -14.17641 -14.00500 -13.51753 -13.41836 -13.29423 -13.05236 -12.66191 -12.65408 -12.52724 -12.46358 -12.38217 -12.19844 -12.02141 -11.93268 -11.92746 -11.90292 -11.53355 -11.46993 -11.20169 -11.12709 -10.68708 -10.48560 -10.44580 -10.25642 -9.60037 -8.56737 -6.28649 0.57597 1.08519 1.54773 1.61032 1.62980 1.79082 2.41175 2.54735 2.59518 2.91787 3.15285 3.22264 3.52094 3.54347 3.68399 3.77051 3.89457 3.92936 3.96557 4.01393 4.08183 4.20946 4.28195 4.30186 4.41982 4.43801 4.49085 4.62848 4.68153 4.73614 4.75027 4.77638 4.79189 4.86608 4.92148 4.94844 4.96878 5.04016 5.06210 5.11953 5.19679 5.27004 5.28519 5.44648 5.57494 5.61791 5.76419 6.12207 6.20042 6.27298 6.67854 7.51847 7.61179 8.81748 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.023255 B = 0.003330 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.744745 B = 8407.125329 C = 8901.255639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.116 4.116 3 H 0.158 0.842 4 C -0.151 4.151 5 C 0.031 3.969 6 H 0.152 0.848 7 N -0.432 5.432 8 C 0.224 3.776 9 C -0.094 4.094 10 C -0.145 4.145 11 C -0.149 4.149 12 N -0.328 5.328 13 N -0.357 5.357 14 C 0.349 3.651 15 N -0.440 5.440 16 C 0.084 3.916 17 C -0.086 4.086 18 C 0.023 3.977 19 C -0.596 4.596 20 H 0.049 0.951 21 C -0.033 4.033 22 N -0.942 5.942 23 Si 1.116 2.884 24 H -0.269 1.269 25 H -0.281 1.281 26 H -0.285 1.285 27 C -0.085 4.085 28 C 0.081 3.919 29 H 0.023 0.977 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.128 0.872 34 H 0.153 0.847 35 H 0.085 0.915 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.076 0.924 39 H 0.027 0.973 40 H 0.075 0.925 41 H 0.058 0.942 42 H 0.065 0.935 43 H -0.006 1.006 44 H 0.257 0.743 45 H 0.065 0.935 46 H 0.038 0.962 47 H 0.016 0.984 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.291 25.196 -6.257 26.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.134 4.134 3 H 0.176 0.824 4 C -0.189 4.189 5 C -0.072 4.072 6 H 0.169 0.831 7 N -0.123 5.123 8 C -0.043 4.043 9 C -0.114 4.114 10 C -0.183 4.183 11 C -0.188 4.188 12 N -0.168 5.168 13 N -0.201 5.201 14 C -0.009 4.009 15 N -0.166 5.166 16 C -0.043 4.043 17 C -0.124 4.124 18 C 0.004 3.996 19 C -0.634 4.634 20 H 0.067 0.933 21 C -0.230 4.230 22 N -0.580 5.580 23 Si 0.939 3.061 24 H -0.194 1.194 25 H -0.207 1.207 26 H -0.211 1.211 27 C -0.123 4.123 28 C -0.046 4.046 29 H 0.043 0.957 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.146 0.854 34 H 0.171 0.829 35 H 0.103 0.897 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.095 0.905 39 H 0.046 0.954 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.013 0.987 44 H 0.067 0.933 45 H 0.084 0.916 46 H 0.057 0.943 47 H 0.035 0.965 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.002 23.318 -6.033 24.823 hybrid contribution -0.373 0.414 -0.577 0.803 sum -6.375 23.733 -6.611 25.448 Atomic orbital electron populations 1.21473 0.92811 1.01753 1.02685 1.23011 0.95721 0.95231 0.99473 0.82433 1.23458 1.04276 1.00599 0.90528 1.22463 0.96524 0.94030 0.94148 0.83069 1.45647 1.34759 1.07741 1.24131 1.24381 0.92733 0.97998 0.89233 1.20433 1.09605 0.90187 0.91207 1.23108 0.91695 1.04822 0.98638 1.23147 0.98530 1.04396 0.92688 1.73852 1.23654 0.97905 1.21367 1.74585 1.16452 1.24834 1.04191 1.22560 0.99152 0.84197 0.94971 1.58792 1.05008 1.29861 1.22914 1.21984 0.94240 0.92031 0.96039 1.21475 0.96828 0.98781 0.95362 1.18905 0.92701 0.92785 0.95163 1.22311 1.27173 1.19643 0.94296 0.93311 1.27185 0.96639 0.94838 1.04368 1.70857 1.46140 1.41588 0.99456 0.82941 0.75445 0.75852 0.71877 1.19411 1.20738 1.21103 1.21532 0.97549 0.98273 0.94975 1.22097 0.88736 0.96458 0.97296 0.95742 0.89195 0.91429 0.89567 0.85371 0.82947 0.89684 0.84677 0.84582 0.90503 0.95423 0.90627 0.92311 0.91592 0.98749 0.93272 0.91641 0.94303 0.96549 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 9.36 71.98 0.67 -1.34 16 2 C -0.12 -1.52 6.28 -10.77 -0.07 -1.59 16 3 H 0.16 0.97 8.14 -2.39 -0.02 0.95 16 4 C -0.15 -2.84 9.43 30.62 0.29 -2.55 16 5 C 0.03 0.60 6.43 44.99 0.29 0.89 16 6 H 0.15 2.31 8.14 -2.39 -0.02 2.29 16 7 N -0.43 -11.84 2.62 -492.46 -1.29 -13.13 16 8 C 0.22 6.12 6.76 137.64 0.93 7.05 16 9 C -0.09 -1.57 5.09 -11.54 -0.06 -1.63 16 10 C -0.14 -2.10 10.15 30.62 0.31 -1.79 16 11 C -0.15 -2.10 10.24 30.62 0.31 -1.78 16 12 N -0.33 -11.77 11.79 -49.53 -0.58 -12.35 16 13 N -0.36 -14.37 11.70 -58.00 -0.68 -15.05 16 14 C 0.35 12.34 6.49 260.11 1.69 14.02 16 15 N -0.44 -15.88 3.74 -706.14 -2.64 -18.52 16 16 C 0.08 3.27 5.10 86.33 0.44 3.71 16 17 C -0.09 -3.63 5.36 30.65 0.16 -3.46 16 18 C 0.02 1.16 1.84 -11.46 -0.02 1.14 16 19 C -0.60 -32.72 8.32 25.60 0.21 -32.50 16 20 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16 21 C -0.03 -1.85 5.46 84.66 0.46 -1.39 16 22 N -0.94 -57.68 13.61 21.45 0.29 -57.39 16 23 Si 1.12 50.08 29.90 68.60 2.05 52.13 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 25 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 26 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 27 C -0.08 -3.73 5.35 30.65 0.16 -3.57 16 28 C 0.08 3.15 5.39 86.33 0.47 3.62 16 29 H 0.02 0.53 7.90 -2.38 -0.02 0.51 16 30 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 1.03 5.29 -2.39 -0.01 1.01 16 32 H 0.09 2.20 7.53 -2.39 -0.02 2.18 16 33 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.15 1.68 6.84 -2.39 -0.02 1.66 16 35 H 0.08 1.70 7.92 -2.38 -0.02 1.68 16 36 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.03 1.18 8.06 -2.39 -0.02 1.16 16 40 H 0.08 2.73 8.10 -2.39 -0.02 2.71 16 41 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.07 2.65 8.14 -2.38 -0.02 2.63 16 43 H -0.01 -0.32 6.76 -2.39 -0.02 -0.34 16 44 H 0.26 15.99 6.61 -92.71 -0.61 15.38 16 45 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 46 H 0.04 1.87 8.06 -2.39 -0.02 1.85 16 47 H 0.02 0.70 8.14 -2.39 -0.02 0.69 16 48 H 0.08 2.70 8.10 -2.38 -0.02 2.68 16 Total: -1.00 -72.54 380.27 4.50 -68.04 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 1.09 Total: 17.46 kcal Atomic # 6 Polarization: -27.45 SS G_CDS: 6.26 Total: -21.19 kcal Atomic # 7 Polarization: -111.53 SS G_CDS: -4.90 Total: -116.44 kcal Atomic # 14 Polarization: 50.08 SS G_CDS: 2.05 Total: 52.13 kcal Total: -72.54 4.50 -68.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433316481.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.667 kcal (2) G-P(sol) polarization free energy of solvation -72.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds