Wall clock time and date at job start Tue Mar 31 2020 11:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 115.56065 * 2 1 4 4 C 1.52996 * 117.49804 * 145.68856 * 2 1 3 5 5 C 1.52999 * 117.49961 * 214.31294 * 2 1 3 6 6 H 1.09002 * 117.51902 * 359.97438 * 5 2 1 7 7 N 1.46494 * 117.50142 * 145.01997 * 5 2 1 8 8 C 1.36747 * 127.13292 * 312.38764 * 7 5 2 9 9 C 1.50693 * 126.35213 * 0.02562 * 8 7 5 10 10 C 1.52993 * 117.50372 * 188.62316 * 9 8 7 11 11 C 1.52998 * 60.00233 * 252.51089 * 10 9 8 12 12 N 1.30295 * 107.30347 * 179.97438 * 8 7 5 13 13 N 1.28539 * 110.05337 * 359.72506 * 12 8 7 14 14 C 1.31215 * 109.85673 * 0.45612 * 13 12 8 15 15 N 1.38576 * 126.47010 * 179.82358 * 14 13 12 16 16 C 1.46898 * 111.00012 * 250.70088 * 15 14 13 17 17 C 1.50702 * 109.46759 * 58.81896 * 16 15 14 18 18 H 1.07998 * 120.00216 * 4.31339 * 17 16 15 19 19 C 1.37879 * 119.99952 * 184.30494 * 17 16 15 20 20 N 1.31513 * 120.00109 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00098 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47132 * 90.00439 * 21 19 17 23 23 H 1.48499 * 109.47379 * 210.00650 * 21 19 17 24 24 H 1.48507 * 109.47080 * 330.00407 * 21 19 17 25 25 C 1.46895 * 111.00335 * 14.65866 * 15 14 13 26 26 C 1.53002 * 109.47636 * 164.72443 * 25 15 14 27 27 C 1.53000 * 117.49930 * 183.90343 * 26 25 15 28 28 C 1.52997 * 117.49899 * 115.27912 * 26 25 15 29 29 H 1.09003 * 109.46597 * 205.69095 * 1 2 3 30 30 H 1.08997 * 109.47355 * 325.68914 * 1 2 3 31 31 H 1.08995 * 109.46975 * 85.68971 * 1 2 3 32 32 H 1.08999 * 117.50080 * 0.02562 * 4 2 1 33 33 H 1.09005 * 117.49730 * 214.97919 * 4 2 1 34 34 H 1.09006 * 115.54654 * 334.33651 * 9 8 7 35 35 H 1.09005 * 117.49815 * 359.97438 * 10 9 8 36 36 H 1.09001 * 117.50374 * 145.01496 * 10 9 8 37 37 H 1.09004 * 117.49423 * 252.50901 * 11 10 9 38 38 H 1.09000 * 117.52097 * 107.47848 * 11 10 9 39 39 H 1.09003 * 109.47196 * 178.81747 * 16 15 14 40 40 H 1.08997 * 109.47345 * 298.82460 * 16 15 14 41 41 H 0.97004 * 120.00530 * 179.97438 * 20 19 17 42 42 H 1.09004 * 109.47137 * 44.72201 * 25 15 14 43 43 H 1.09002 * 109.47066 * 284.72789 * 25 15 14 44 44 H 1.08999 * 115.55738 * 329.58928 * 26 25 15 45 45 H 1.09002 * 117.49442 * 145.01717 * 27 26 25 46 46 H 1.08994 * 117.49903 * 359.97438 * 27 26 25 47 47 H 1.08996 * 117.50331 * 0.02562 * 28 26 25 48 48 H 1.09003 * 117.49683 * 214.98065 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9834 0.0000 4 6 2.2365 -1.1210 0.7650 5 6 2.2365 -1.1209 -0.7650 6 1 1.6116 -1.8589 -1.2681 7 7 3.4932 -0.7906 -1.4414 8 6 3.7376 0.2848 -2.2501 9 6 2.7556 1.3669 -2.6183 10 6 3.1776 2.3668 -3.6966 11 6 3.1104 2.8042 -2.2320 12 7 4.9773 0.2010 -2.6423 13 7 5.5302 -0.8430 -2.1357 14 6 4.6629 -1.4916 -1.3949 15 7 4.8932 -2.6640 -0.6929 16 6 4.1868 -3.7945 -1.3099 17 6 4.6489 -3.9581 -2.7350 18 1 5.4421 -3.3347 -3.1204 19 6 4.0590 -4.9036 -3.5468 20 7 3.0928 -5.6625 -3.0776 21 14 4.6322 -5.1069 -5.3130 22 1 5.7288 -6.1069 -5.3656 23 1 3.4980 -5.5716 -6.1513 24 1 5.1257 -3.8036 -5.8264 25 6 6.3322 -2.9385 -0.5841 26 6 6.5693 -3.9981 0.4940 27 6 8.0193 -4.3576 0.8244 28 6 7.1446 -5.3437 0.0476 29 1 -0.3632 -0.9261 0.4455 30 1 -0.3634 0.8488 0.5792 31 1 -0.3633 0.0772 -1.0247 32 1 1.6112 -1.8587 1.2679 33 1 3.1716 -0.8751 1.2683 34 1 1.7045 1.0805 -2.5806 35 1 4.1658 2.2422 -4.1395 36 1 2.4042 2.7383 -4.3689 37 1 2.2927 3.4635 -1.9408 38 1 4.0539 2.9670 -1.7112 39 1 4.4015 -4.7057 -0.7515 40 1 3.1137 -3.6039 -1.2956 41 1 2.6775 -6.3275 -3.6488 42 1 6.8576 -2.0222 -0.3147 43 1 6.7058 -3.3036 -1.5408 44 1 5.8499 -4.0049 1.3129 45 1 8.2538 -4.6010 1.8607 46 1 8.8043 -3.8396 0.2735 47 1 7.3545 -5.4740 -1.0140 48 1 6.8036 -6.2359 0.5729 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434626161.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:08 Heat of formation + Delta-G solvation = 149.153002 kcal Electronic energy + Delta-G solvation = -27800.375889 eV Core-core repulsion = 24279.935342 eV Total energy + Delta-G solvation = -3520.440547 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.86056 -39.48407 -39.00910 -38.00366 -36.93625 -34.67667 -33.99406 -30.65534 -29.38480 -29.19277 -27.18684 -25.46779 -24.55815 -23.95046 -23.25127 -23.14306 -21.87693 -21.49570 -21.15822 -20.43744 -18.77695 -18.36412 -17.41512 -17.20262 -16.81956 -16.54427 -16.23338 -15.54529 -15.36958 -15.08647 -14.88159 -14.67332 -14.48735 -13.92479 -13.66968 -13.40327 -13.18396 -13.14329 -13.07911 -12.67285 -12.53760 -12.45796 -12.42458 -12.32402 -12.30559 -12.13323 -12.10425 -11.94683 -11.67100 -11.56640 -11.37057 -11.20225 -10.95190 -10.78575 -10.67374 -10.67261 -10.29439 -9.09140 -8.29147 -6.41932 0.88577 1.23649 1.25477 1.36806 1.37899 1.89209 2.28123 2.47204 2.84481 2.98451 3.00243 3.10006 3.30319 3.60636 3.62784 3.80656 3.94106 3.96319 4.00740 4.05493 4.14342 4.19010 4.27554 4.31133 4.47162 4.57404 4.65417 4.79578 4.81599 4.83301 4.85190 4.90100 4.92539 4.95212 4.97239 5.06610 5.10019 5.13646 5.15970 5.22025 5.22824 5.31537 5.32589 5.37746 5.40208 5.62430 5.72592 5.90352 6.02242 6.48707 6.71763 7.27039 7.89327 8.75286 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.010012 B = 0.005382 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2795.987503 B = 5201.339589 C = 5914.575466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.106 4.106 3 H 0.117 0.883 4 C -0.146 4.146 5 C 0.032 3.968 6 H 0.114 0.886 7 N -0.448 5.448 8 C 0.200 3.800 9 C -0.094 4.094 10 C -0.152 4.152 11 C -0.134 4.134 12 N -0.329 5.329 13 N -0.373 5.373 14 C 0.395 3.605 15 N -0.450 5.450 16 C 0.219 3.781 17 C -0.554 4.554 18 H 0.042 0.958 19 C 0.031 3.969 20 N -0.911 5.911 21 Si 0.938 3.062 22 H -0.267 1.267 23 H -0.273 1.273 24 H -0.290 1.290 25 C 0.115 3.885 26 C -0.150 4.150 27 C -0.152 4.152 28 C -0.181 4.181 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.125 0.875 33 H 0.090 0.910 34 H 0.139 0.861 35 H 0.081 0.919 36 H 0.131 0.869 37 H 0.140 0.860 38 H 0.082 0.918 39 H 0.037 0.963 40 H 0.017 0.983 41 H 0.267 0.733 42 H 0.066 0.934 43 H 0.032 0.968 44 H 0.111 0.889 45 H 0.120 0.880 46 H 0.093 0.907 47 H 0.072 0.928 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.634 12.243 9.172 16.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.125 4.125 3 H 0.135 0.865 4 C -0.184 4.184 5 C -0.072 4.072 6 H 0.132 0.868 7 N -0.140 5.140 8 C -0.068 4.068 9 C -0.115 4.115 10 C -0.190 4.190 11 C -0.172 4.172 12 N -0.168 5.168 13 N -0.217 5.217 14 C 0.038 3.962 15 N -0.173 5.173 16 C 0.094 3.906 17 C -0.593 4.593 18 H 0.060 0.940 19 C -0.170 4.170 20 N -0.550 5.550 21 Si 0.765 3.235 22 H -0.192 1.192 23 H -0.198 1.198 24 H -0.216 1.216 25 C -0.013 4.013 26 C -0.169 4.169 27 C -0.189 4.189 28 C -0.218 4.218 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.087 0.913 32 H 0.143 0.857 33 H 0.108 0.892 34 H 0.157 0.843 35 H 0.100 0.900 36 H 0.149 0.851 37 H 0.158 0.842 38 H 0.100 0.900 39 H 0.055 0.945 40 H 0.035 0.965 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.050 0.950 44 H 0.129 0.871 45 H 0.138 0.862 46 H 0.112 0.888 47 H 0.091 0.909 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.637 12.434 8.924 15.992 hybrid contribution -0.250 -1.394 -1.545 2.096 sum -4.887 11.040 7.379 14.150 Atomic orbital electron populations 1.21445 0.89204 1.03770 1.03189 1.22909 0.97374 0.93812 0.98372 0.86549 1.23464 1.02858 1.01738 0.90339 1.22126 0.85531 1.05604 0.93955 0.86796 1.45484 1.10667 1.19407 1.38466 1.24274 0.95032 0.92046 0.95465 1.20249 0.95701 0.86690 1.08816 1.23063 1.03602 0.99743 0.92564 1.23117 1.03886 0.92769 0.97460 1.73668 1.06065 1.15065 1.21982 1.74483 1.27639 1.06456 1.13082 1.22585 0.83856 0.94793 0.94982 1.59268 1.12819 0.99777 1.45419 1.19479 0.92699 0.86802 0.91609 1.21819 1.19746 1.19246 0.98448 0.93968 1.25448 0.94867 0.95271 1.01449 1.69982 1.25021 1.22423 1.37605 0.85860 0.78622 0.77833 0.81226 1.19204 1.19757 1.21581 1.21343 0.84952 0.97764 0.97204 1.22070 0.98140 0.96356 1.00326 1.23030 0.92072 1.01895 1.01885 1.22953 1.04926 0.93881 1.00079 0.91697 0.89122 0.91310 0.85695 0.89196 0.84288 0.90000 0.85129 0.84232 0.89982 0.94450 0.96527 0.92373 0.91593 0.95009 0.87103 0.86193 0.88813 0.90899 0.88076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.73 10.19 71.98 0.73 -0.99 16 2 C -0.11 -2.22 5.25 -10.79 -0.06 -2.28 16 3 H 0.12 2.37 7.66 -2.39 -0.02 2.35 16 4 C -0.15 -3.73 10.09 30.59 0.31 -3.42 16 5 C 0.03 1.00 5.33 44.99 0.24 1.24 16 6 H 0.11 4.00 7.92 -2.39 -0.02 3.98 16 7 N -0.45 -17.87 3.09 -492.48 -1.52 -19.40 16 8 C 0.20 7.72 7.48 137.63 1.03 8.74 16 9 C -0.09 -2.47 4.98 -11.54 -0.06 -2.53 16 10 C -0.15 -3.45 10.15 30.59 0.31 -3.14 16 11 C -0.13 -2.62 10.23 30.59 0.31 -2.31 16 12 N -0.33 -15.21 11.79 -49.54 -0.58 -15.79 16 13 N -0.37 -18.75 11.11 -58.01 -0.64 -19.40 16 14 C 0.40 18.41 5.77 260.12 1.50 19.91 16 15 N -0.45 -20.26 4.70 -710.37 -3.34 -23.60 16 16 C 0.22 11.25 4.94 85.56 0.42 11.68 16 17 C -0.55 -31.79 7.62 25.60 0.19 -31.59 16 18 H 0.04 2.61 6.45 -2.91 -0.02 2.59 16 19 C 0.03 1.75 5.46 84.66 0.46 2.21 16 20 N -0.91 -52.73 13.29 21.45 0.28 -52.45 16 21 Si 0.94 46.51 29.54 68.60 2.03 48.53 16 22 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 24 H -0.29 -15.11 7.11 99.48 0.71 -14.40 16 25 C 0.11 4.87 4.58 86.30 0.40 5.27 16 26 C -0.15 -5.23 5.01 -10.79 -0.05 -5.28 16 27 C -0.15 -4.18 10.25 30.60 0.31 -3.87 16 28 C -0.18 -6.08 10.18 30.59 0.31 -5.77 16 29 H 0.06 0.94 7.90 -2.39 -0.02 0.92 16 30 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.12 2.74 8.05 -2.39 -0.02 2.72 16 33 H 0.09 2.54 8.14 -2.38 -0.02 2.52 16 34 H 0.14 3.06 7.85 -2.38 -0.02 3.04 16 35 H 0.08 2.33 7.92 -2.38 -0.02 2.31 16 36 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.14 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.04 2.00 7.35 -2.39 -0.02 1.98 16 40 H 0.02 0.91 7.05 -2.39 -0.02 0.89 16 41 H 0.27 14.62 8.31 -92.70 -0.77 13.85 16 42 H 0.07 2.76 7.78 -2.39 -0.02 2.74 16 43 H 0.03 1.55 6.21 -2.39 -0.01 1.54 16 44 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 45 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 46 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 47 H 0.07 2.80 8.03 -2.39 -0.02 2.78 16 48 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -72.77 392.25 3.52 -69.25 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.94 Total: 24.99 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: 6.37 Total: -12.14 kcal Atomic # 7 Polarization: -124.83 SS G_CDS: -5.81 Total: -130.64 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.53 kcal Total: -72.77 3.52 -69.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434626161.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.404 kcal (2) G-P(sol) polarization free energy of solvation -72.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds