Wall clock time and date at job start Tue Mar 31 2020 11:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 115.56728 * 2 1 4 4 C 1.53002 * 117.49674 * 214.30705 * 2 1 3 5 5 C 1.52990 * 60.00056 * 252.51775 * 4 2 1 6 6 H 1.09004 * 117.49639 * 252.48728 * 5 4 2 7 7 N 1.46503 * 117.50121 * 107.49612 * 5 4 2 8 8 C 1.36736 * 127.13381 * 213.45989 * 7 5 4 9 9 C 1.50701 * 126.35044 * 359.95911 * 8 7 5 10 10 C 1.53003 * 117.49865 * 188.74737 * 9 8 7 11 11 C 1.52996 * 117.49773 * 120.08705 * 9 8 7 12 12 N 1.30295 * 107.30219 * 179.83110 * 8 7 5 13 13 N 1.28530 * 110.05526 * 0.44354 * 12 8 7 14 14 C 1.31222 * 109.85707 * 359.71430 * 13 12 8 15 15 N 1.38573 * 126.47161 * 179.97438 * 14 13 12 16 16 C 1.46902 * 111.00283 * 253.82057 * 15 14 13 17 17 C 1.50692 * 109.47174 * 62.59936 * 16 15 14 18 18 H 1.08005 * 120.00286 * 4.11090 * 17 16 15 19 19 C 1.37881 * 119.99932 * 184.11223 * 17 16 15 20 20 N 1.31508 * 120.00221 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99784 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47275 * 90.00172 * 21 19 17 23 23 H 1.48501 * 109.46720 * 210.00194 * 21 19 17 24 24 H 1.48499 * 109.47010 * 329.99705 * 21 19 17 25 25 C 1.46902 * 111.00222 * 17.77303 * 15 14 13 26 26 C 1.52998 * 109.47528 * 164.74700 * 25 15 14 27 27 C 1.52997 * 117.50318 * 243.54579 * 26 25 15 28 28 C 1.52994 * 117.50219 * 174.88406 * 26 25 15 29 29 H 1.08997 * 109.47499 * 274.31442 * 1 2 3 30 30 H 1.09009 * 109.46731 * 34.31067 * 1 2 3 31 31 H 1.08997 * 109.47325 * 154.30384 * 1 2 3 32 32 H 1.09000 * 117.49406 * 145.02187 * 4 2 1 33 33 H 1.08999 * 117.49979 * 0.02562 * 4 2 1 34 34 H 1.09003 * 115.55107 * 334.42238 * 9 8 7 35 35 H 1.08998 * 117.49979 * 0.02562 * 10 9 8 36 36 H 1.09001 * 117.49368 * 145.02422 * 10 9 8 37 37 H 1.09004 * 117.50398 * 214.97807 * 11 9 8 38 38 H 1.09001 * 117.50377 * 359.97438 * 11 9 8 39 39 H 1.09005 * 109.47123 * 182.60047 * 16 15 14 40 40 H 1.08999 * 109.46993 * 302.59840 * 16 15 14 41 41 H 0.96996 * 120.00094 * 179.97438 * 20 19 17 42 42 H 1.08993 * 109.47260 * 284.75210 * 25 15 14 43 43 H 1.09002 * 109.46727 * 44.74922 * 25 15 14 44 44 H 1.09002 * 115.54814 * 29.21737 * 26 25 15 45 45 H 1.09008 * 117.49642 * 0.02562 * 27 26 25 46 46 H 1.09003 * 117.50125 * 145.01524 * 27 26 25 47 47 H 1.09001 * 117.50116 * 214.98057 * 28 26 25 48 48 H 1.09000 * 117.49798 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2364 -1.1211 -0.7649 5 6 2.2363 -1.1211 0.7650 6 1 3.1715 -0.8757 1.2683 7 7 1.3959 -2.1123 1.4414 8 6 0.7355 -1.9618 2.6292 9 6 0.7342 -0.7325 3.5010 10 6 0.0953 -0.8496 4.8863 11 6 -0.6143 -0.0655 3.7795 12 7 0.1053 -3.0773 2.8662 13 7 0.3285 -3.9191 1.9209 14 6 1.1147 -3.3791 1.0197 15 7 1.5732 -3.9819 -0.1408 16 6 2.9924 -4.3420 -0.0217 17 6 3.1634 -5.3514 1.0840 18 1 2.2972 -5.7413 1.5981 19 6 4.4256 -5.7773 1.4396 20 7 5.4803 -5.3031 0.8134 21 14 4.6376 -7.0281 2.8108 22 1 4.6064 -8.3986 2.2399 23 1 5.9398 -6.8037 3.4884 24 1 3.5352 -6.8761 3.7941 25 6 0.7589 -5.1562 -0.4813 26 6 1.0344 -5.5654 -1.9296 27 6 -0.1276 -5.4798 -2.9212 28 6 0.3700 -6.8453 -2.4406 29 1 -0.3634 0.0773 1.0247 30 1 -0.3633 0.8489 -0.5793 31 1 -0.3634 -0.9260 -0.4456 32 1 3.1715 -0.8752 -1.2682 33 1 1.6112 -1.8583 -1.2685 34 1 1.6051 -0.0846 3.4015 35 1 -0.3237 -1.8158 5.1673 36 1 0.5457 -0.2784 5.6981 37 1 -0.6305 1.0212 3.8637 38 1 -1.5004 -0.5155 3.3319 39 1 3.3385 -4.7711 -0.9621 40 1 3.5756 -3.4501 0.2071 41 1 6.3683 -5.6024 1.0637 42 1 1.0143 -5.9808 0.1841 43 1 -0.2972 -4.9113 -0.3676 44 1 2.0320 -5.3330 -2.3021 45 1 -1.0884 -5.1315 -2.5418 46 1 0.1056 -5.1914 -3.9462 47 1 0.9303 -7.4547 -3.1497 48 1 -0.2631 -7.3961 -1.7450 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434626165.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:11 Heat of formation + Delta-G solvation = 167.872498 kcal Electronic energy + Delta-G solvation = -28071.385276 eV Core-core repulsion = 24551.756467 eV Total energy + Delta-G solvation = -3519.628809 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.32251 -37.96096 -37.77802 -36.93112 -35.48986 -32.54948 -32.35092 -29.05376 -28.44289 -27.34815 -25.54645 -23.90696 -23.12239 -22.41342 -22.28799 -22.00465 -20.90926 -20.10382 -19.28466 -18.99290 -16.90098 -16.59127 -16.14938 -15.72677 -15.27832 -15.23516 -14.52743 -14.43120 -14.25307 -13.60084 -13.45686 -13.06919 -12.91647 -12.66686 -12.28620 -12.14352 -11.88069 -11.47244 -11.44315 -11.31174 -11.16711 -11.08208 -10.87948 -10.82637 -10.74776 -10.64998 -10.50031 -10.41626 -10.32878 -10.12820 -10.00370 -9.80960 -9.51782 -9.46194 -9.19431 -8.54116 -8.50658 -7.36320 -6.12885 -4.19098 2.39416 2.79636 3.27183 3.33463 3.42105 3.49944 3.67931 4.06754 4.19286 4.39345 4.47426 4.57811 4.68734 4.78504 4.90562 5.01863 5.10089 5.19226 5.20426 5.24729 5.28385 5.36028 5.49333 5.65573 5.71467 5.76840 5.79845 5.89155 5.90741 5.94894 5.97217 5.98817 6.01610 6.15845 6.20556 6.23809 6.25986 6.37996 6.42834 6.43959 6.58402 6.71806 6.86555 7.03917 7.30306 7.32895 7.63696 7.83860 8.08333 8.18775 8.89365 9.48091 9.52770 10.93773 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.009641 B = 0.006007 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.432355 B = 4660.337342 C = 5969.170446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.151 4.151 3 H 0.113 0.887 4 C -0.147 4.147 5 C 0.065 3.935 6 H 0.128 0.872 7 N -0.443 5.443 8 C 0.189 3.811 9 C -0.069 4.069 10 C -0.154 4.154 11 C -0.163 4.163 12 N -0.289 5.289 13 N -0.334 5.334 14 C 0.414 3.586 15 N -0.463 5.463 16 C 0.194 3.806 17 C -0.549 4.549 18 H 0.068 0.932 19 C 0.069 3.931 20 N -0.892 5.892 21 Si 0.889 3.111 22 H -0.278 1.278 23 H -0.286 1.286 24 H -0.272 1.272 25 C 0.106 3.894 26 C -0.129 4.129 27 C -0.185 4.185 28 C -0.180 4.180 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.106 0.894 33 H 0.122 0.878 34 H 0.117 0.883 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.046 0.954 40 H 0.036 0.964 41 H 0.263 0.737 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.111 0.889 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.090 0.910 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.355 11.668 -2.821 14.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.170 4.170 3 H 0.131 0.869 4 C -0.184 4.184 5 C -0.041 4.041 6 H 0.146 0.854 7 N -0.137 5.137 8 C -0.078 4.078 9 C -0.089 4.089 10 C -0.191 4.191 11 C -0.201 4.201 12 N -0.128 5.128 13 N -0.178 5.178 14 C 0.058 3.942 15 N -0.186 5.186 16 C 0.071 3.929 17 C -0.588 4.588 18 H 0.086 0.914 19 C -0.133 4.133 20 N -0.531 5.531 21 Si 0.716 3.284 22 H -0.204 1.204 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.022 4.022 26 C -0.147 4.147 27 C -0.222 4.222 28 C -0.217 4.217 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.124 0.876 33 H 0.140 0.860 34 H 0.134 0.866 35 H 0.126 0.874 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.129 0.871 45 H 0.106 0.894 46 H 0.105 0.895 47 H 0.109 0.891 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.046 10.935 -2.554 14.419 hybrid contribution 1.572 -0.383 0.641 1.741 sum -7.474 10.551 -1.912 13.071 Atomic orbital electron populations 1.21303 0.92415 1.01896 1.02169 1.22816 0.96202 0.94438 1.03588 0.86905 1.23524 1.03293 1.00136 0.91495 1.21823 0.95253 0.93128 0.93853 0.85440 1.45173 1.38683 1.11328 1.18470 1.23228 0.98912 0.97949 0.87704 1.19873 0.98131 0.93876 0.97046 1.22992 1.02639 1.02893 0.90616 1.23029 0.95054 0.98959 1.03077 1.73774 1.20845 0.98380 1.19809 1.74632 1.21280 1.22103 0.99756 1.22441 0.96335 0.82765 0.92641 1.59336 1.07624 1.27947 1.23735 1.19945 0.78741 0.96488 0.97757 1.21763 0.93230 1.25127 1.18691 0.91368 1.24871 0.95769 0.96336 0.96362 1.69924 0.98269 1.43500 1.41410 0.86615 0.77552 0.81740 0.82449 1.20375 1.21208 1.19667 1.21447 0.95450 0.91778 0.93511 1.22224 0.97577 1.00358 0.94580 1.23001 0.98952 1.00924 0.99349 1.22900 1.04270 0.90866 1.03714 0.91900 0.92128 0.92564 0.87556 0.85982 0.86552 0.87356 0.88347 0.88394 0.88471 0.93638 0.94548 0.92787 0.91034 0.91813 0.87136 0.89368 0.89463 0.89135 0.89059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.45 9.56 37.16 0.36 -1.10 16 2 C -0.15 -1.80 6.41 -90.62 -0.58 -2.38 16 3 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 4 C -0.15 -2.05 9.14 -26.74 -0.24 -2.30 16 5 C 0.06 0.99 5.83 -67.94 -0.40 0.60 16 6 H 0.13 1.90 8.14 -51.93 -0.42 1.48 16 7 N -0.44 -8.33 2.51 -107.01 -0.27 -8.60 16 8 C 0.19 3.50 7.14 -154.02 -1.10 2.40 16 9 C -0.07 -0.94 5.72 -91.77 -0.53 -1.47 16 10 C -0.15 -1.87 10.15 -26.69 -0.27 -2.14 16 11 C -0.16 -1.81 9.68 -26.69 -0.26 -2.07 16 12 N -0.29 -6.27 11.79 32.99 0.39 -5.89 16 13 N -0.33 -7.82 11.20 30.31 0.34 -7.48 16 14 C 0.41 8.95 5.70 -318.89 -1.82 7.13 16 15 N -0.46 -9.63 3.05 -175.88 -0.54 -10.17 16 16 C 0.19 4.70 4.89 -4.98 -0.02 4.68 16 17 C -0.55 -15.05 7.66 -34.44 -0.26 -15.32 16 18 H 0.07 1.97 6.33 -52.48 -0.33 1.64 16 19 C 0.07 1.94 5.46 -17.82 -0.10 1.85 16 20 N -0.89 -25.52 13.29 55.43 0.74 -24.78 16 21 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 24 H -0.27 -6.99 7.11 56.52 0.40 -6.59 16 25 C 0.11 2.09 4.55 -3.82 -0.02 2.07 16 26 C -0.13 -2.19 5.71 -90.62 -0.52 -2.70 16 27 C -0.19 -2.58 10.18 -26.70 -0.27 -2.85 16 28 C -0.18 -2.63 10.25 -26.70 -0.27 -2.90 16 29 H 0.06 0.78 6.90 -51.93 -0.36 0.43 16 30 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 31 H 0.06 0.80 7.90 -51.93 -0.41 0.39 16 32 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.12 1.93 6.80 -51.93 -0.35 1.58 16 34 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.11 1.52 7.92 -51.93 -0.41 1.11 16 36 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 40 H 0.04 0.94 7.26 -51.93 -0.38 0.56 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.07 1.62 6.20 -51.93 -0.32 1.30 16 43 H 0.06 1.24 7.57 -51.93 -0.39 0.85 16 44 H 0.11 2.01 6.73 -51.93 -0.35 1.66 16 45 H 0.09 1.20 8.03 -51.92 -0.42 0.78 16 46 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 48 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 386.86 15.07 5.83 5.83 Total: -1.00 -31.17 386.86 -12.69 -43.85 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -7.85 Total: 6.58 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -6.30 Total: -16.48 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: 0.66 Total: -56.92 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.17 -12.69 -43.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434626165.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.725 kcal (2) G-P(sol) polarization free energy of solvation -31.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 180.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds