Wall clock time and date at job start Tue Mar 31 2020 11:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 115.56728 * 2 1 4 4 C 1.53002 * 117.49674 * 214.30705 * 2 1 3 5 5 C 1.52990 * 60.00056 * 252.51775 * 4 2 1 6 6 H 1.09004 * 117.49639 * 252.48728 * 5 4 2 7 7 N 1.46503 * 117.50121 * 107.49612 * 5 4 2 8 8 C 1.36736 * 127.13381 * 213.45989 * 7 5 4 9 9 C 1.50701 * 126.35044 * 359.95911 * 8 7 5 10 10 C 1.53003 * 117.49865 * 188.74737 * 9 8 7 11 11 C 1.52996 * 117.49773 * 120.08705 * 9 8 7 12 12 N 1.30295 * 107.30219 * 179.83110 * 8 7 5 13 13 N 1.28530 * 110.05526 * 0.44354 * 12 8 7 14 14 C 1.31222 * 109.85707 * 359.71430 * 13 12 8 15 15 N 1.38573 * 126.47161 * 179.97438 * 14 13 12 16 16 C 1.46902 * 111.00283 * 253.82057 * 15 14 13 17 17 C 1.50692 * 109.47174 * 62.59936 * 16 15 14 18 18 H 1.08005 * 120.00286 * 4.11090 * 17 16 15 19 19 C 1.37881 * 119.99932 * 184.11223 * 17 16 15 20 20 N 1.31508 * 120.00221 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99784 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47275 * 90.00172 * 21 19 17 23 23 H 1.48501 * 109.46720 * 210.00194 * 21 19 17 24 24 H 1.48499 * 109.47010 * 329.99705 * 21 19 17 25 25 C 1.46902 * 111.00222 * 17.77303 * 15 14 13 26 26 C 1.52998 * 109.47528 * 164.74700 * 25 15 14 27 27 C 1.52997 * 117.50318 * 243.54579 * 26 25 15 28 28 C 1.52994 * 117.50219 * 174.88406 * 26 25 15 29 29 H 1.08997 * 109.47499 * 274.31442 * 1 2 3 30 30 H 1.09009 * 109.46731 * 34.31067 * 1 2 3 31 31 H 1.08997 * 109.47325 * 154.30384 * 1 2 3 32 32 H 1.09000 * 117.49406 * 145.02187 * 4 2 1 33 33 H 1.08999 * 117.49979 * 0.02562 * 4 2 1 34 34 H 1.09003 * 115.55107 * 334.42238 * 9 8 7 35 35 H 1.08998 * 117.49979 * 0.02562 * 10 9 8 36 36 H 1.09001 * 117.49368 * 145.02422 * 10 9 8 37 37 H 1.09004 * 117.50398 * 214.97807 * 11 9 8 38 38 H 1.09001 * 117.50377 * 359.97438 * 11 9 8 39 39 H 1.09005 * 109.47123 * 182.60047 * 16 15 14 40 40 H 1.08999 * 109.46993 * 302.59840 * 16 15 14 41 41 H 0.96996 * 120.00094 * 179.97438 * 20 19 17 42 42 H 1.08993 * 109.47260 * 284.75210 * 25 15 14 43 43 H 1.09002 * 109.46727 * 44.74922 * 25 15 14 44 44 H 1.09002 * 115.54814 * 29.21737 * 26 25 15 45 45 H 1.09008 * 117.49642 * 0.02562 * 27 26 25 46 46 H 1.09003 * 117.50125 * 145.01524 * 27 26 25 47 47 H 1.09001 * 117.50116 * 214.98057 * 28 26 25 48 48 H 1.09000 * 117.49798 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2364 -1.1211 -0.7649 5 6 2.2363 -1.1211 0.7650 6 1 3.1715 -0.8757 1.2683 7 7 1.3959 -2.1123 1.4414 8 6 0.7355 -1.9618 2.6292 9 6 0.7342 -0.7325 3.5010 10 6 0.0953 -0.8496 4.8863 11 6 -0.6143 -0.0655 3.7795 12 7 0.1053 -3.0773 2.8662 13 7 0.3285 -3.9191 1.9209 14 6 1.1147 -3.3791 1.0197 15 7 1.5732 -3.9819 -0.1408 16 6 2.9924 -4.3420 -0.0217 17 6 3.1634 -5.3514 1.0840 18 1 2.2972 -5.7413 1.5981 19 6 4.4256 -5.7773 1.4396 20 7 5.4803 -5.3031 0.8134 21 14 4.6376 -7.0281 2.8108 22 1 4.6064 -8.3986 2.2399 23 1 5.9398 -6.8037 3.4884 24 1 3.5352 -6.8761 3.7941 25 6 0.7589 -5.1562 -0.4813 26 6 1.0344 -5.5654 -1.9296 27 6 -0.1276 -5.4798 -2.9212 28 6 0.3700 -6.8453 -2.4406 29 1 -0.3634 0.0773 1.0247 30 1 -0.3633 0.8489 -0.5793 31 1 -0.3634 -0.9260 -0.4456 32 1 3.1715 -0.8752 -1.2682 33 1 1.6112 -1.8583 -1.2685 34 1 1.6051 -0.0846 3.4015 35 1 -0.3237 -1.8158 5.1673 36 1 0.5457 -0.2784 5.6981 37 1 -0.6305 1.0212 3.8637 38 1 -1.5004 -0.5155 3.3319 39 1 3.3385 -4.7711 -0.9621 40 1 3.5756 -3.4501 0.2071 41 1 6.3683 -5.6024 1.0637 42 1 1.0143 -5.9808 0.1841 43 1 -0.2972 -4.9113 -0.3676 44 1 2.0320 -5.3330 -2.3021 45 1 -1.0884 -5.1315 -2.5418 46 1 0.1056 -5.1914 -3.9462 47 1 0.9303 -7.4547 -3.1497 48 1 -0.2631 -7.3961 -1.7450 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434626165.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:10 Heat of formation + Delta-G solvation = 154.165054 kcal Electronic energy + Delta-G solvation = -28071.979675 eV Core-core repulsion = 24551.756467 eV Total energy + Delta-G solvation = -3520.223208 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.85989 -39.47040 -38.96180 -38.00075 -36.97217 -34.64854 -33.79271 -30.66036 -29.54423 -29.16718 -27.26606 -25.39570 -24.56337 -24.01624 -23.23514 -23.17559 -22.02187 -21.47735 -20.83459 -20.33216 -18.66016 -18.17194 -17.59141 -17.18692 -16.76392 -16.57451 -16.18052 -15.85495 -15.45297 -15.21358 -14.81161 -14.62970 -14.11134 -13.96984 -13.76239 -13.41976 -13.24847 -13.13092 -13.05092 -12.70489 -12.49803 -12.43296 -12.34767 -12.31155 -12.27202 -12.16516 -12.06760 -11.87085 -11.71401 -11.50099 -11.39811 -11.20123 -11.01312 -10.84627 -10.66742 -10.49141 -10.17050 -9.08503 -8.28145 -6.40985 0.90877 1.25613 1.27144 1.38772 1.40531 1.92056 2.29765 2.56017 2.84275 2.99895 3.00800 3.11975 3.33904 3.60792 3.64810 3.83162 3.90843 3.99685 4.03569 4.07326 4.15300 4.20754 4.31999 4.35960 4.40799 4.56331 4.64634 4.80292 4.80380 4.83975 4.85560 4.89653 4.95033 4.98297 5.02044 5.04205 5.09021 5.14127 5.14758 5.22294 5.22881 5.30653 5.32197 5.36231 5.40392 5.63698 5.73715 5.91545 6.03994 6.51503 6.73176 7.28218 7.92429 8.76145 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.009641 B = 0.006007 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.432355 B = 4660.337342 C = 5969.170446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.110 4.110 3 H 0.153 0.847 4 C -0.154 4.154 5 C 0.028 3.972 6 H 0.132 0.868 7 N -0.441 5.441 8 C 0.205 3.795 9 C -0.093 4.093 10 C -0.153 4.153 11 C -0.134 4.134 12 N -0.331 5.331 13 N -0.372 5.372 14 C 0.391 3.609 15 N -0.446 5.446 16 C 0.218 3.782 17 C -0.556 4.556 18 H 0.046 0.954 19 C 0.028 3.972 20 N -0.913 5.913 21 Si 0.941 3.059 22 H -0.266 1.266 23 H -0.274 1.274 24 H -0.289 1.289 25 C 0.116 3.884 26 C -0.157 4.157 27 C -0.158 4.158 28 C -0.172 4.172 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.025 0.975 32 H 0.121 0.879 33 H 0.099 0.901 34 H 0.140 0.860 35 H 0.081 0.919 36 H 0.130 0.870 37 H 0.138 0.862 38 H 0.082 0.918 39 H 0.035 0.965 40 H 0.020 0.980 41 H 0.267 0.733 42 H 0.033 0.967 43 H 0.062 0.938 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.110 0.890 47 H 0.106 0.894 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.574 14.235 -3.184 16.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.128 4.128 3 H 0.171 0.829 4 C -0.192 4.192 5 C -0.075 4.075 6 H 0.149 0.851 7 N -0.133 5.133 8 C -0.063 4.063 9 C -0.113 4.113 10 C -0.191 4.191 11 C -0.172 4.172 12 N -0.170 5.170 13 N -0.215 5.215 14 C 0.034 3.966 15 N -0.169 5.169 16 C 0.093 3.907 17 C -0.595 4.595 18 H 0.064 0.936 19 C -0.172 4.172 20 N -0.553 5.553 21 Si 0.767 3.233 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.215 1.215 25 C -0.011 4.011 26 C -0.175 4.175 27 C -0.194 4.194 28 C -0.210 4.210 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.044 0.956 32 H 0.140 0.860 33 H 0.117 0.883 34 H 0.157 0.843 35 H 0.100 0.900 36 H 0.148 0.852 37 H 0.156 0.844 38 H 0.100 0.900 39 H 0.053 0.947 40 H 0.038 0.962 41 H 0.076 0.924 42 H 0.052 0.948 43 H 0.080 0.920 44 H 0.115 0.885 45 H 0.112 0.888 46 H 0.128 0.872 47 H 0.125 0.875 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.270 13.507 -2.926 16.641 hybrid contribution 1.575 -1.127 0.800 2.096 sum -7.695 12.380 -2.126 14.731 Atomic orbital electron populations 1.21322 0.92452 1.01646 1.02246 1.22971 0.95971 0.94770 0.99116 0.82918 1.23523 1.04146 1.01077 0.90428 1.22223 0.96121 0.94651 0.94541 0.85077 1.45394 1.38477 1.10947 1.18478 1.24200 0.96373 0.98359 0.87399 1.20225 1.00821 0.92845 0.97432 1.23070 1.02550 1.02484 0.90948 1.23101 0.92535 1.00803 1.00756 1.73685 1.23345 0.99746 1.20232 1.74493 1.22554 1.23717 1.00763 1.22553 0.97145 0.84070 0.92842 1.59336 1.05994 1.27974 1.23568 1.19501 0.80653 0.94639 0.95937 1.21886 0.92572 1.25714 1.19342 0.93625 1.25481 0.95670 0.97879 0.98215 1.69982 0.98548 1.44361 1.42369 0.85819 0.77148 0.80460 0.79873 1.19162 1.19914 1.21455 1.21318 0.95024 0.90054 0.94750 1.22048 0.98323 1.03648 0.93519 1.23060 0.97414 0.99628 0.99330 1.23009 1.03619 0.90802 1.03534 0.92132 0.89072 0.95555 0.86035 0.88296 0.84259 0.90019 0.85225 0.84435 0.89973 0.94738 0.96210 0.92411 0.94840 0.91988 0.88538 0.88836 0.87191 0.87528 0.89025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 9.56 71.98 0.69 -1.92 16 2 C -0.11 -2.31 6.41 -10.79 -0.07 -2.38 16 3 H 0.15 2.11 8.14 -2.39 -0.02 2.09 16 4 C -0.15 -4.20 9.14 30.59 0.28 -3.92 16 5 C 0.03 0.86 5.83 44.99 0.26 1.12 16 6 H 0.13 3.81 8.14 -2.39 -0.02 3.79 16 7 N -0.44 -16.95 2.51 -492.49 -1.24 -18.18 16 8 C 0.20 7.70 7.14 137.64 0.98 8.68 16 9 C -0.09 -2.39 5.72 -11.54 -0.07 -2.46 16 10 C -0.15 -3.44 10.15 30.62 0.31 -3.12 16 11 C -0.13 -2.60 9.68 30.62 0.30 -2.30 16 12 N -0.33 -15.08 11.79 -49.54 -0.58 -15.67 16 13 N -0.37 -18.49 11.20 -58.01 -0.65 -19.14 16 14 C 0.39 17.80 5.70 260.12 1.48 19.28 16 15 N -0.45 -19.62 3.05 -710.38 -2.17 -21.78 16 16 C 0.22 11.06 4.89 85.55 0.42 11.48 16 17 C -0.56 -31.90 7.66 25.60 0.20 -31.70 16 18 H 0.05 2.80 6.33 -2.91 -0.02 2.79 16 19 C 0.03 1.61 5.46 84.66 0.46 2.08 16 20 N -0.91 -53.00 13.29 21.45 0.28 -52.72 16 21 Si 0.94 46.54 29.54 68.60 2.03 48.56 16 22 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.29 -14.97 7.11 99.48 0.71 -14.27 16 25 C 0.12 4.90 4.55 86.30 0.39 5.29 16 26 C -0.16 -5.48 5.71 -10.80 -0.06 -5.54 16 27 C -0.16 -4.21 10.18 30.62 0.31 -3.90 16 28 C -0.17 -4.94 10.25 30.61 0.31 -4.63 16 29 H 0.06 1.37 6.90 -2.39 -0.02 1.35 16 30 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.03 0.72 7.90 -2.39 -0.02 0.71 16 32 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 33 H 0.10 3.20 6.80 -2.39 -0.02 3.19 16 34 H 0.14 2.96 8.14 -2.39 -0.02 2.94 16 35 H 0.08 2.31 7.92 -2.39 -0.02 2.29 16 36 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.14 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.03 1.82 6.62 -2.38 -0.02 1.81 16 40 H 0.02 1.07 7.26 -2.39 -0.02 1.05 16 41 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 42 H 0.03 1.64 6.20 -2.39 -0.01 1.63 16 43 H 0.06 2.57 7.57 -2.39 -0.02 2.56 16 44 H 0.10 3.65 6.73 -2.39 -0.02 3.63 16 45 H 0.09 2.42 8.03 -2.38 -0.02 2.41 16 46 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 47 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 48 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -72.40 386.86 4.82 -67.58 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.95 Total: 25.29 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: 6.20 Total: -13.95 kcal Atomic # 7 Polarization: -123.14 SS G_CDS: -4.35 Total: -127.49 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.56 kcal Total: -72.40 4.82 -67.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434626165.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.750 kcal (2) G-P(sol) polarization free energy of solvation -72.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds