Wall clock time and date at job start Tue Mar 31 2020 11:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46710 * 150.56443 * 3 2 1 5 5 H 1.09004 * 109.47498 * 54.88899 * 4 3 2 6 6 C 1.53003 * 109.47143 * 294.89332 * 4 3 2 7 7 C 1.52999 * 109.47185 * 174.31392 * 6 4 3 8 8 C 1.50701 * 109.47330 * 174.89059 * 4 3 2 9 9 N 1.30291 * 126.34189 * 60.02193 * 8 4 3 10 10 N 1.28533 * 110.04944 * 180.02562 * 9 8 4 11 11 C 1.31218 * 109.86220 * 359.97438 * 10 9 8 12 12 N 1.38581 * 126.47218 * 180.02562 * 11 10 9 13 13 C 1.46850 * 110.99979 * 68.27423 * 12 11 10 14 14 C 1.53037 * 109.51931 * 174.15704 * 13 12 11 15 15 C 1.53122 * 109.27789 * 59.18402 * 14 13 12 16 16 C 1.50701 * 109.52482 * 182.43655 * 15 14 13 17 17 H 1.07999 * 120.00364 * 119.67434 * 16 15 14 18 18 C 1.37885 * 119.99932 * 299.68456 * 16 15 14 19 19 N 1.31512 * 119.99921 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99849 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47284 * 90.00283 * 20 18 16 22 22 H 1.48506 * 109.46690 * 210.00481 * 20 18 16 23 23 H 1.48501 * 109.47212 * 329.99944 * 20 18 16 24 24 C 1.53116 * 109.15945 * 302.33905 * 15 14 13 25 25 C 1.46847 * 111.00251 * 304.06298 * 12 11 10 26 26 N 1.36452 * 107.05238 * 359.73980 * 11 10 9 27 27 C 1.46500 * 127.13878 * 180.26769 * 26 11 10 28 28 H 4.44649 * 5.63382 * 180.02562 * 4 1 2 29 29 H 1.09000 * 109.46851 * 270.55732 * 3 2 1 30 30 H 1.08995 * 109.47285 * 30.56787 * 3 2 1 31 31 H 1.08995 * 109.46846 * 294.30904 * 6 4 3 32 32 H 1.09000 * 109.46987 * 54.31308 * 6 4 3 33 33 H 1.08992 * 109.47370 * 185.54173 * 7 6 4 34 34 H 1.09000 * 109.47399 * 305.54382 * 7 6 4 35 35 H 1.09002 * 109.47537 * 65.53676 * 7 6 4 36 36 H 1.08997 * 109.46175 * 294.17625 * 13 12 11 37 37 H 1.09000 * 109.46166 * 54.14295 * 13 12 11 38 38 H 1.08998 * 109.50672 * 299.23629 * 14 13 12 39 39 H 1.09002 * 109.50249 * 179.11747 * 14 13 12 40 40 H 1.08999 * 109.52119 * 62.24698 * 15 14 13 41 41 H 0.97001 * 119.99819 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.50778 * 297.71987 * 24 15 14 43 43 H 1.09002 * 109.50327 * 177.59449 * 24 15 14 44 44 H 1.09002 * 109.46083 * 305.85867 * 25 12 11 45 45 H 1.09006 * 109.45824 * 65.82266 * 25 12 11 46 46 H 1.09003 * 109.46555 * 264.75160 * 27 26 11 47 47 H 1.08993 * 109.46962 * 24.74431 * 27 26 11 48 48 H 1.09000 * 109.47308 * 144.74909 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.2572 -0.7089 5 1 2.7188 2.1401 -0.2420 6 6 2.7528 1.2090 -2.1843 7 6 3.1367 2.5264 -2.8610 8 6 4.6570 1.3218 -0.5997 9 7 5.5025 0.4376 -1.0479 10 7 6.7057 0.8055 -0.7849 11 6 6.6921 1.9537 -0.1499 12 7 7.7968 2.6616 0.2959 13 6 8.5764 3.1860 -0.8326 14 6 9.7010 4.0803 -0.3056 15 6 10.6017 3.2641 0.6256 16 6 11.6762 4.1543 1.1948 17 1 11.7498 4.2967 2.2628 18 6 12.5652 4.7871 0.3520 19 7 13.5026 5.5644 0.8487 20 14 12.4382 4.5404 -1.4953 21 1 11.5403 5.5730 -2.0721 22 1 13.7871 4.6609 -2.1047 23 1 11.8863 3.1910 -1.7777 24 6 9.7564 2.6893 1.7656 25 6 8.6302 1.8354 1.1786 26 7 5.3849 2.3222 -0.0174 27 6 4.8684 3.5359 0.6200 28 1 -1.0503 -0.0002 0.0004 29 1 3.0093 -0.0092 1.0276 30 1 3.0097 -0.8840 -0.5226 31 1 3.2697 0.3844 -2.6751 32 1 1.6758 1.0607 -2.2624 33 1 2.7629 2.5314 -3.8848 34 1 2.6989 3.3589 -2.3102 35 1 4.2220 2.6276 -2.8699 36 1 9.0052 2.3563 -1.3945 37 1 7.9251 3.7679 -1.4848 38 1 9.2723 4.9179 0.2446 39 1 10.2890 4.4568 -1.1426 40 1 11.0610 2.4492 0.0660 41 1 14.1283 6.0093 0.2558 42 1 9.3286 3.5049 2.3485 43 1 10.3840 2.0719 2.4084 44 1 8.0179 1.4362 1.9872 45 1 9.0588 1.0119 0.6073 46 1 4.6049 3.3186 1.6552 47 1 5.6325 4.3127 0.5950 48 1 3.9835 3.8793 0.0842 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519188634.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:02 Heat of formation + Delta-G solvation = 129.190626 kcal Electronic energy + Delta-G solvation = -26911.068991 eV Core-core repulsion = 23389.762810 eV Total energy + Delta-G solvation = -3521.306181 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.02545 -38.70602 -37.29908 -34.98760 -34.11159 -33.28259 -31.74906 -30.49144 -30.42113 -28.72238 -27.65905 -25.90996 -24.91466 -23.10390 -22.74147 -22.27738 -20.84098 -20.17382 -18.79418 -18.40118 -17.33724 -16.78129 -16.45450 -16.33304 -15.56337 -14.81166 -14.63228 -14.50344 -14.25928 -14.06752 -13.76290 -13.46032 -13.40937 -13.16201 -12.98862 -12.92724 -12.43671 -12.35481 -11.98797 -11.88571 -11.82527 -11.62089 -11.46295 -11.18530 -10.97842 -10.67323 -10.61274 -10.50669 -10.39250 -10.24019 -10.11985 -10.00032 -9.72490 -9.22292 -9.02254 -8.91356 -8.56498 -8.48643 -6.08658 -4.07583 1.67076 2.16718 2.49996 2.52219 2.85320 3.24376 3.37558 3.38609 3.80059 3.90919 4.18014 4.36394 4.39414 4.55930 4.63599 4.75340 4.95662 5.03560 5.13260 5.16053 5.20520 5.25920 5.29322 5.35456 5.47894 5.51180 5.56502 5.63989 5.68850 5.75248 5.77587 5.81438 5.88542 5.94630 5.98998 6.00637 6.04255 6.22810 6.34272 6.52423 6.63252 6.69675 6.86860 7.04690 7.23310 7.27923 7.41244 7.55121 7.75081 8.50883 8.75851 8.95663 9.54005 11.04629 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.028022 B = 0.002929 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.991756 B = 9558.502902 C = 9910.469486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.180 4.180 3 C -0.003 4.003 4 C 0.013 3.987 5 H 0.088 0.912 6 C -0.114 4.114 7 C -0.151 4.151 8 C 0.174 3.826 9 N -0.281 5.281 10 N -0.312 5.312 11 C 0.360 3.640 12 N -0.464 5.464 13 C 0.067 3.933 14 C -0.115 4.115 15 C 0.012 3.988 16 C -0.510 4.510 17 H 0.074 0.926 18 C 0.069 3.931 19 N -0.901 5.901 20 Si 0.883 3.117 21 H -0.279 1.279 22 H -0.297 1.297 23 H -0.264 1.264 24 C -0.095 4.095 25 C 0.070 3.930 26 N -0.466 5.466 27 C 0.077 3.923 28 H 0.217 0.783 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.046 0.954 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.027 0.973 41 H 0.263 0.737 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.049 0.951 46 H 0.080 0.920 47 H 0.102 0.898 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.716 -6.236 -2.616 26.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.180 4.180 3 C -0.040 4.040 4 C -0.008 4.008 5 H 0.107 0.893 6 C -0.152 4.152 7 C -0.209 4.209 8 C -0.094 4.094 9 N -0.122 5.122 10 N -0.156 5.156 11 C 0.004 3.996 12 N -0.191 5.191 13 C -0.059 4.059 14 C -0.153 4.153 15 C -0.007 4.007 16 C -0.548 4.548 17 H 0.093 0.907 18 C -0.132 4.132 19 N -0.539 5.539 20 Si 0.713 3.287 21 H -0.206 1.206 22 H -0.224 1.224 23 H -0.189 1.189 24 C -0.133 4.133 25 C -0.056 4.056 26 N -0.159 5.159 27 C -0.066 4.066 28 H 0.234 0.766 29 H 0.107 0.893 30 H 0.120 0.880 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.045 0.955 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.068 0.932 46 H 0.099 0.901 47 H 0.120 0.880 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -25.149 -6.924 -3.028 26.260 hybrid contribution -0.349 0.746 -0.776 1.131 sum -25.498 -6.178 -3.803 26.510 Atomic orbital electron populations 1.24889 0.95883 1.00534 1.01247 1.22892 0.94168 1.00681 1.00244 1.18685 0.84746 0.98639 1.01977 1.19535 0.84043 0.99040 0.98167 0.89338 1.21607 1.01663 0.99314 0.92660 1.21768 1.01576 0.96904 1.00636 1.24430 0.96408 0.87844 1.00693 1.73951 0.95381 1.23323 1.19516 1.74696 1.14062 1.10684 1.16134 1.22620 0.85137 0.92422 0.99443 1.58826 1.06198 1.34779 1.19256 1.22289 0.95105 0.98472 0.90044 1.22086 0.94732 0.98703 0.99806 1.19217 0.93375 0.95362 0.92783 1.21013 1.11550 1.26927 0.95330 0.90745 1.25022 0.94998 0.94690 0.98497 1.69895 1.17948 1.30770 1.35316 0.86912 0.76219 0.79232 0.86335 1.20588 1.22429 1.18944 1.21543 0.94369 0.98477 0.98896 1.22260 0.94301 0.94651 0.94419 1.46229 1.06446 1.19122 1.44083 1.22054 1.01247 0.85117 0.98160 0.76626 0.89339 0.88039 0.90280 0.90689 0.92223 0.92904 0.92969 0.93543 0.92034 0.91048 0.92683 0.95503 0.92684 0.91643 0.91478 0.91753 0.93247 0.90145 0.87970 0.89850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.47 19.25 29.55 0.57 -0.90 16 2 C -0.18 -1.49 12.23 -37.12 -0.45 -1.94 16 3 C 0.00 -0.03 5.17 -29.52 -0.15 -0.18 16 4 C 0.01 0.11 2.20 -91.77 -0.20 -0.09 16 5 H 0.09 0.64 7.08 -51.93 -0.37 0.27 16 6 C -0.11 -0.96 5.28 -26.73 -0.14 -1.10 16 7 C -0.15 -1.28 9.64 37.16 0.36 -0.93 16 8 C 0.17 2.14 5.69 -154.02 -0.88 1.26 16 9 N -0.28 -4.43 12.18 32.99 0.40 -4.02 16 10 N -0.31 -5.55 12.13 30.31 0.37 -5.18 16 11 C 0.36 5.77 6.46 -318.87 -2.06 3.71 16 12 N -0.46 -7.74 4.64 -174.55 -0.81 -8.55 16 13 C 0.07 1.22 5.40 -3.83 -0.02 1.20 16 14 C -0.12 -2.39 4.84 -26.65 -0.13 -2.52 16 15 C 0.01 0.26 1.75 -91.65 -0.16 0.10 16 16 C -0.51 -13.87 9.14 -34.44 -0.31 -14.19 16 17 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 18 C 0.07 1.96 5.45 -17.82 -0.10 1.86 16 19 N -0.90 -27.19 13.96 55.43 0.77 -26.41 16 20 Si 0.88 21.62 24.37 -169.99 -4.14 17.48 16 21 H -0.28 -6.60 6.89 56.52 0.39 -6.21 16 22 H -0.30 -7.36 7.11 56.52 0.40 -6.95 16 23 H -0.26 -6.26 6.53 56.52 0.37 -5.89 16 24 C -0.09 -1.80 5.32 -26.65 -0.14 -1.95 16 25 C 0.07 1.20 5.32 -3.83 -0.02 1.18 16 26 N -0.47 -5.90 3.21 -121.46 -0.39 -6.29 16 27 C 0.08 0.67 10.81 59.85 0.65 1.31 16 28 H 0.22 0.82 7.80 -54.08 -0.42 0.40 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.55 7.22 -51.93 -0.37 0.17 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.05 0.56 7.58 -51.93 -0.39 0.17 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 1.02 8.10 -51.93 -0.42 0.60 16 38 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 39 H 0.06 1.21 3.38 -51.93 -0.18 1.04 16 40 H 0.03 0.64 7.19 -51.93 -0.37 0.26 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 45 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.10 0.95 8.11 -51.93 -0.42 0.53 16 48 H 0.08 0.51 7.48 -51.93 -0.39 0.12 16 LS Contribution 382.87 15.07 5.77 5.77 Total: -1.00 -32.23 382.87 -9.23 -41.47 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -8.01 Total: -1.09 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -3.20 Total: -13.17 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: 0.34 Total: -50.46 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.14 Total: 17.48 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.23 -9.23 -41.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519188634.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.656 kcal (2) G-P(sol) polarization free energy of solvation -32.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds