Wall clock time and date at job start Tue Mar 31 2020 11:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46710 * 150.56443 * 3 2 1 5 5 H 1.09004 * 109.47498 * 54.88899 * 4 3 2 6 6 C 1.53003 * 109.47143 * 294.89332 * 4 3 2 7 7 C 1.52999 * 109.47185 * 174.31392 * 6 4 3 8 8 C 1.50701 * 109.47330 * 174.89059 * 4 3 2 9 9 N 1.30291 * 126.34189 * 60.02193 * 8 4 3 10 10 N 1.28533 * 110.04944 * 180.02562 * 9 8 4 11 11 C 1.31218 * 109.86220 * 359.97438 * 10 9 8 12 12 N 1.38581 * 126.47218 * 180.02562 * 11 10 9 13 13 C 1.46850 * 110.99979 * 68.27423 * 12 11 10 14 14 C 1.53037 * 109.51931 * 174.15704 * 13 12 11 15 15 C 1.53122 * 109.27789 * 59.18402 * 14 13 12 16 16 C 1.50701 * 109.52482 * 182.43655 * 15 14 13 17 17 H 1.07999 * 120.00364 * 119.67434 * 16 15 14 18 18 C 1.37885 * 119.99932 * 299.68456 * 16 15 14 19 19 N 1.31512 * 119.99921 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99849 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47284 * 90.00283 * 20 18 16 22 22 H 1.48506 * 109.46690 * 210.00481 * 20 18 16 23 23 H 1.48501 * 109.47212 * 329.99944 * 20 18 16 24 24 C 1.53116 * 109.15945 * 302.33905 * 15 14 13 25 25 C 1.46847 * 111.00251 * 304.06298 * 12 11 10 26 26 N 1.36452 * 107.05238 * 359.73980 * 11 10 9 27 27 C 1.46500 * 127.13878 * 180.26769 * 26 11 10 28 28 H 4.44649 * 5.63382 * 180.02562 * 4 1 2 29 29 H 1.09000 * 109.46851 * 270.55732 * 3 2 1 30 30 H 1.08995 * 109.47285 * 30.56787 * 3 2 1 31 31 H 1.08995 * 109.46846 * 294.30904 * 6 4 3 32 32 H 1.09000 * 109.46987 * 54.31308 * 6 4 3 33 33 H 1.08992 * 109.47370 * 185.54173 * 7 6 4 34 34 H 1.09000 * 109.47399 * 305.54382 * 7 6 4 35 35 H 1.09002 * 109.47537 * 65.53676 * 7 6 4 36 36 H 1.08997 * 109.46175 * 294.17625 * 13 12 11 37 37 H 1.09000 * 109.46166 * 54.14295 * 13 12 11 38 38 H 1.08998 * 109.50672 * 299.23629 * 14 13 12 39 39 H 1.09002 * 109.50249 * 179.11747 * 14 13 12 40 40 H 1.08999 * 109.52119 * 62.24698 * 15 14 13 41 41 H 0.97001 * 119.99819 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.50778 * 297.71987 * 24 15 14 43 43 H 1.09002 * 109.50327 * 177.59449 * 24 15 14 44 44 H 1.09002 * 109.46083 * 305.85867 * 25 12 11 45 45 H 1.09006 * 109.45824 * 65.82266 * 25 12 11 46 46 H 1.09003 * 109.46555 * 264.75160 * 27 26 11 47 47 H 1.08993 * 109.46962 * 24.74431 * 27 26 11 48 48 H 1.09000 * 109.47308 * 144.74909 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.2572 -0.7089 5 1 2.7188 2.1401 -0.2420 6 6 2.7528 1.2090 -2.1843 7 6 3.1367 2.5264 -2.8610 8 6 4.6570 1.3218 -0.5997 9 7 5.5025 0.4376 -1.0479 10 7 6.7057 0.8055 -0.7849 11 6 6.6921 1.9537 -0.1499 12 7 7.7968 2.6616 0.2959 13 6 8.5764 3.1860 -0.8326 14 6 9.7010 4.0803 -0.3056 15 6 10.6017 3.2641 0.6256 16 6 11.6762 4.1543 1.1948 17 1 11.7498 4.2967 2.2628 18 6 12.5652 4.7871 0.3520 19 7 13.5026 5.5644 0.8487 20 14 12.4382 4.5404 -1.4953 21 1 11.5403 5.5730 -2.0721 22 1 13.7871 4.6609 -2.1047 23 1 11.8863 3.1910 -1.7777 24 6 9.7564 2.6893 1.7656 25 6 8.6302 1.8354 1.1786 26 7 5.3849 2.3222 -0.0174 27 6 4.8684 3.5359 0.6200 28 1 -1.0503 -0.0002 0.0004 29 1 3.0093 -0.0092 1.0276 30 1 3.0097 -0.8840 -0.5226 31 1 3.2697 0.3844 -2.6751 32 1 1.6758 1.0607 -2.2624 33 1 2.7629 2.5314 -3.8848 34 1 2.6989 3.3589 -2.3102 35 1 4.2220 2.6276 -2.8699 36 1 9.0052 2.3563 -1.3945 37 1 7.9251 3.7679 -1.4848 38 1 9.2723 4.9179 0.2446 39 1 10.2890 4.4568 -1.1426 40 1 11.0610 2.4492 0.0660 41 1 14.1283 6.0093 0.2558 42 1 9.3286 3.5049 2.3485 43 1 10.3840 2.0719 2.4084 44 1 8.0179 1.4362 1.9872 45 1 9.0588 1.0119 0.6073 46 1 4.6049 3.3186 1.6552 47 1 5.6325 4.3127 0.5950 48 1 3.9835 3.8793 0.0842 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001519188634.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:01 Heat of formation + Delta-G solvation = 111.667219 kcal Electronic energy + Delta-G solvation = -26911.828863 eV Core-core repulsion = 23389.762810 eV Total energy + Delta-G solvation = -3522.066053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.11089 -40.14689 -38.06526 -36.11538 -35.64151 -33.98979 -33.60194 -31.95080 -31.30698 -29.81913 -28.53274 -27.58695 -25.67102 -24.43214 -24.05927 -23.62844 -22.10297 -21.18310 -20.29705 -18.96105 -18.84241 -18.43836 -17.53956 -17.39058 -16.52452 -16.39777 -15.90281 -15.37414 -15.27011 -15.08504 -14.88450 -14.80847 -14.69789 -14.33479 -14.11651 -14.03904 -13.87862 -13.55353 -13.39705 -13.05677 -12.83512 -12.65440 -12.47813 -12.29377 -12.23231 -12.16489 -11.90755 -11.76885 -11.63939 -11.44957 -11.19927 -11.08893 -11.02518 -10.96679 -10.95492 -10.65663 -10.09226 -9.84178 -8.28630 -6.31251 0.62278 1.18338 1.28450 1.36646 1.45258 1.67701 1.96512 1.97850 2.32235 2.65515 3.06522 3.11194 3.50192 3.72058 3.76881 3.86000 3.97506 3.98777 4.07298 4.09660 4.25960 4.32085 4.36919 4.40090 4.42161 4.46674 4.53141 4.61751 4.64505 4.67383 4.68852 4.80341 4.89110 4.92489 4.95219 4.99972 5.03759 5.06244 5.16832 5.19842 5.22532 5.34400 5.45618 5.57796 5.66928 5.68705 5.76993 6.23623 6.33089 6.75207 6.75738 7.33929 7.64748 8.88062 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.028022 B = 0.002929 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.991756 B = 9558.502902 C = 9910.469486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.213 4.213 3 C 0.003 3.997 4 C 0.017 3.983 5 H 0.114 0.886 6 C -0.109 4.109 7 C -0.149 4.149 8 C 0.197 3.803 9 N -0.315 5.315 10 N -0.346 5.346 11 C 0.343 3.657 12 N -0.456 5.456 13 C 0.078 3.922 14 C -0.109 4.109 15 C 0.009 3.991 16 C -0.511 4.511 17 H 0.039 0.961 18 C 0.014 3.986 19 N -0.948 5.948 20 Si 0.941 3.059 21 H -0.262 1.262 22 H -0.301 1.301 23 H -0.253 1.253 24 C -0.086 4.086 25 C 0.081 3.919 26 N -0.461 5.461 27 C 0.068 3.932 28 H 0.245 0.755 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.024 0.976 36 H 0.033 0.967 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.044 0.956 40 H 0.016 0.984 41 H 0.265 0.735 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.038 0.962 46 H 0.099 0.901 47 H 0.096 0.904 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.629 -6.202 -3.338 30.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.214 4.214 3 C -0.035 4.035 4 C -0.004 4.004 5 H 0.132 0.868 6 C -0.148 4.148 7 C -0.206 4.206 8 C -0.071 4.071 9 N -0.156 5.156 10 N -0.190 5.190 11 C -0.014 4.014 12 N -0.182 5.182 13 C -0.049 4.049 14 C -0.146 4.146 15 C -0.010 4.010 16 C -0.549 4.549 17 H 0.057 0.943 18 C -0.183 4.183 19 N -0.589 5.589 20 Si 0.769 3.231 21 H -0.188 1.188 22 H -0.229 1.229 23 H -0.177 1.177 24 C -0.124 4.124 25 C -0.046 4.046 26 N -0.152 5.152 27 C -0.074 4.074 28 H 0.262 0.738 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.044 0.956 36 H 0.052 0.948 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.034 0.966 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.102 0.898 45 H 0.056 0.944 46 H 0.117 0.883 47 H 0.115 0.885 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -29.099 -6.891 -3.739 30.136 hybrid contribution 0.755 0.710 -0.455 1.132 sum -28.344 -6.181 -4.194 29.312 Atomic orbital electron populations 1.25652 0.96649 0.98807 0.99596 1.22940 0.94379 1.02265 1.01773 1.18531 0.85384 0.97916 1.01668 1.19740 0.81485 1.00378 0.98776 0.86818 1.21567 1.02395 0.98706 0.92091 1.21753 0.99810 0.97503 1.01528 1.25071 0.97498 0.86508 0.98072 1.73887 0.95327 1.24971 1.21374 1.74591 1.15495 1.11823 1.17121 1.22442 0.85868 0.92548 1.00547 1.58757 1.06143 1.34744 1.18542 1.22090 0.94676 0.97690 0.90470 1.21887 0.95103 0.98804 0.98836 1.19181 0.93098 0.94451 0.94231 1.21311 1.12708 1.26981 0.93870 0.94264 1.25811 0.94712 0.94549 1.03207 1.70037 1.19298 1.32515 1.37054 0.85956 0.76229 0.80124 0.80822 1.18761 1.22855 1.17749 1.21400 0.94642 0.98705 0.97679 1.22093 0.93899 0.93741 0.94867 1.46418 1.05200 1.20049 1.43542 1.22420 1.02105 0.83365 0.99474 0.73838 0.89424 0.89213 0.92096 0.89007 0.91531 0.91059 0.95647 0.94837 0.90174 0.90969 0.93761 0.96564 0.92637 0.91601 0.91455 0.89821 0.94393 0.88299 0.88544 0.86757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.03 19.25 74.32 1.43 -0.60 16 2 C -0.21 -2.96 12.23 31.13 0.38 -2.58 16 3 C 0.00 0.04 5.17 28.79 0.15 0.19 16 4 C 0.02 0.25 2.20 -11.54 -0.03 0.23 16 5 H 0.11 1.15 7.08 -2.39 -0.02 1.14 16 6 C -0.11 -1.59 5.28 30.59 0.16 -1.42 16 7 C -0.15 -2.14 9.64 71.98 0.69 -1.45 16 8 C 0.20 4.49 5.69 137.64 0.78 5.27 16 9 N -0.32 -9.75 12.18 -49.54 -0.60 -10.36 16 10 N -0.35 -12.14 12.13 -58.00 -0.70 -12.85 16 11 C 0.34 10.52 6.46 260.11 1.68 12.20 16 12 N -0.46 -14.57 4.64 -706.14 -3.28 -17.85 16 13 C 0.08 2.71 5.40 86.33 0.47 3.17 16 14 C -0.11 -4.39 4.84 30.65 0.15 -4.24 16 15 C 0.01 0.42 1.75 -11.46 -0.02 0.40 16 16 C -0.51 -28.46 9.14 25.60 0.23 -28.23 16 17 H 0.04 2.40 7.99 -2.91 -0.02 2.38 16 18 C 0.01 0.82 5.45 84.66 0.46 1.28 16 19 N -0.95 -58.88 13.96 21.45 0.30 -58.58 16 20 Si 0.94 44.91 24.37 68.60 1.67 46.58 16 21 H -0.26 -11.70 6.89 99.48 0.69 -11.01 16 22 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 23 H -0.25 -11.50 6.53 99.48 0.65 -10.85 16 24 C -0.09 -3.26 5.32 30.64 0.16 -3.10 16 25 C 0.08 2.68 5.32 86.33 0.46 3.13 16 26 N -0.46 -10.58 3.21 -538.19 -1.73 -12.30 16 27 C 0.07 0.93 10.81 127.77 1.38 2.31 16 28 H 0.25 0.80 7.80 -4.40 -0.03 0.77 16 29 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.09 1.06 7.22 -2.39 -0.02 1.04 16 33 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.02 0.50 7.58 -2.39 -0.02 0.48 16 36 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.08 2.50 8.10 -2.39 -0.02 2.48 16 38 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 39 H 0.04 1.89 3.38 -2.39 -0.01 1.88 16 40 H 0.02 0.77 7.19 -2.39 -0.02 0.76 16 41 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 42 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 43 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.08 2.47 8.10 -2.39 -0.02 2.45 16 45 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 46 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.10 1.51 8.11 -2.39 -0.02 1.49 16 48 H 0.11 0.87 7.48 -2.39 -0.02 0.86 16 Total: -1.00 -72.15 382.87 5.05 -67.10 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.85 Total: 11.68 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: 8.55 Total: -13.43 kcal Atomic # 7 Polarization: -105.92 SS G_CDS: -6.01 Total: -111.93 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.67 Total: 46.58 kcal Total: -72.15 5.05 -67.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519188634.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.763 kcal (2) G-P(sol) polarization free energy of solvation -72.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds