Wall clock time and date at job start Tue Mar 31 2020 11:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47224 * 43.06301 * 3 2 1 5 5 H 1.08996 * 109.47391 * 304.99620 * 4 3 2 6 6 C 1.53000 * 109.47389 * 65.00021 * 4 3 2 7 7 C 1.53002 * 109.47548 * 184.99935 * 6 4 3 8 8 C 1.50700 * 109.47054 * 184.99813 * 4 3 2 9 9 N 1.30289 * 126.35149 * 299.68815 * 8 4 3 10 10 N 1.28535 * 110.05489 * 179.82161 * 9 8 4 11 11 C 1.31216 * 109.85995 * 0.45339 * 10 9 8 12 12 N 1.38569 * 126.47055 * 179.72851 * 11 10 9 13 13 C 1.46845 * 111.00209 * 62.31481 * 12 11 10 14 14 C 1.53035 * 109.52855 * 174.16053 * 13 12 11 15 15 C 1.53120 * 109.27911 * 59.17136 * 14 13 12 16 16 C 1.50700 * 109.52112 * 182.44345 * 15 14 13 17 17 H 1.08003 * 119.99592 * 119.69001 * 16 15 14 18 18 C 1.37877 * 120.00436 * 299.68164 * 16 15 14 19 19 N 1.31519 * 119.99601 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00124 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47085 * 90.00601 * 20 18 16 22 22 H 1.48503 * 109.46922 * 210.00519 * 20 18 16 23 23 H 1.48502 * 109.47168 * 330.00271 * 20 18 16 24 24 C 1.53116 * 109.16387 * 302.35122 * 15 14 13 25 25 C 1.46847 * 111.00291 * 298.10063 * 12 11 10 26 26 N 1.36451 * 107.05274 * 359.72932 * 11 10 9 27 27 C 1.46501 * 127.13687 * 179.97438 * 26 11 10 28 28 H 4.44642 * 5.63380 * 180.02562 * 4 1 2 29 29 H 1.09004 * 109.47081 * 163.06300 * 3 2 1 30 30 H 1.09000 * 109.47381 * 283.06044 * 3 2 1 31 31 H 1.09004 * 109.47044 * 305.00343 * 6 4 3 32 32 H 1.08999 * 109.47060 * 64.99505 * 6 4 3 33 33 H 1.08996 * 109.46979 * 300.00314 * 7 6 4 34 34 H 1.09000 * 109.46824 * 59.99963 * 7 6 4 35 35 H 1.08993 * 109.47050 * 179.97438 * 7 6 4 36 36 H 1.09007 * 109.46252 * 294.17127 * 13 12 11 37 37 H 1.08997 * 109.46434 * 54.13797 * 13 12 11 38 38 H 1.09005 * 109.49973 * 299.23908 * 14 13 12 39 39 H 1.08993 * 109.50748 * 179.12113 * 14 13 12 40 40 H 1.09006 * 109.51846 * 62.26019 * 15 14 13 41 41 H 0.96998 * 119.99637 * 180.02562 * 19 18 16 42 42 H 1.08998 * 109.50311 * 297.70958 * 24 15 14 43 43 H 1.09000 * 109.50068 * 177.59001 * 24 15 14 44 44 H 1.08997 * 109.46120 * 305.85544 * 25 12 11 45 45 H 1.08998 * 109.46221 * 65.82487 * 25 12 11 46 46 H 1.08991 * 109.47064 * 265.13065 * 27 26 11 47 47 H 1.09004 * 109.47070 * 25.12874 * 27 26 11 48 48 H 1.09000 * 109.47294 * 145.12772 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.0530 -0.9849 5 1 2.7224 -2.0218 -0.7380 6 6 2.7516 -0.6603 -2.4072 7 6 3.1523 -1.7735 -3.3773 8 6 4.6585 -1.1381 -0.8957 9 7 5.5019 -0.1731 -1.1296 10 7 6.7060 -0.5884 -0.9568 11 6 6.6955 -1.8539 -0.6098 12 7 7.8022 -2.6443 -0.3443 13 6 8.5536 -2.1281 0.8070 14 6 9.6801 -3.1016 1.1607 15 6 10.6073 -3.2624 -0.0472 16 6 11.6845 -4.2658 0.2749 17 1 11.7786 -5.1654 -0.3154 18 6 12.5502 -4.0355 1.3230 19 7 12.4354 -2.9402 2.0420 20 14 13.8860 -5.2789 1.7218 21 1 15.1157 -4.9462 0.9587 22 1 14.1804 -5.2396 3.1768 23 1 13.4236 -6.6394 1.3469 24 6 9.7910 -3.7549 -1.2454 25 6 8.6613 -2.7623 -1.5294 26 7 5.3890 -2.2443 -0.5599 27 6 4.8754 -3.5731 -0.2182 28 1 -1.0498 -0.0001 -0.0004 29 1 3.0089 0.9840 -0.2994 30 1 3.0095 -0.2314 1.0011 31 1 1.6726 -0.5120 -2.4499 32 1 3.2567 0.2643 -2.6865 33 1 4.2312 -1.9218 -3.3346 34 1 2.6471 -2.6981 -3.0979 35 1 2.8634 -1.4940 -4.3904 36 1 8.9789 -1.1561 0.5568 37 1 7.8836 -2.0224 1.6602 38 1 9.2547 -4.0700 1.4243 39 1 10.2472 -2.7106 2.0053 40 1 11.0630 -2.3017 -0.2870 41 1 13.0447 -2.7780 2.7792 42 1 9.3674 -4.7335 -1.0196 43 1 10.4374 -3.8304 -2.1197 44 1 8.0694 -3.1174 -2.3730 45 1 9.0860 -1.7874 -1.7686 46 1 4.7096 -4.1444 -1.1314 47 1 5.6001 -4.0925 0.4088 48 1 3.9344 -3.4709 0.3225 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519188641.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:05 Heat of formation + Delta-G solvation = 121.013497 kcal Electronic energy + Delta-G solvation = -26778.311158 eV Core-core repulsion = 23256.650391 eV Total energy + Delta-G solvation = -3521.660768 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.89722 -38.42334 -37.19692 -34.86260 -33.98464 -33.23150 -31.50616 -30.38294 -29.95771 -28.50428 -27.53388 -25.71092 -24.83916 -23.01827 -22.51612 -22.20966 -20.73758 -20.06953 -18.55544 -18.32627 -17.18611 -16.47827 -16.37953 -15.96804 -15.45078 -14.70341 -14.52509 -14.49072 -14.10476 -14.00167 -13.53745 -13.33886 -13.28695 -12.95039 -12.78994 -12.55692 -12.42615 -12.28591 -11.77346 -11.64112 -11.57676 -11.35611 -11.11934 -11.04900 -10.90189 -10.58866 -10.54732 -10.39793 -10.32064 -10.30865 -10.16780 -10.00124 -9.56090 -9.10262 -8.84015 -8.74288 -8.33221 -8.30968 -6.00249 -4.05894 1.79584 2.28640 2.56749 2.57357 2.97917 3.29918 3.37033 3.39676 3.89715 4.08316 4.25858 4.42959 4.43512 4.65413 4.71082 4.82332 5.03681 5.09638 5.22653 5.29901 5.32725 5.33568 5.37543 5.46539 5.59947 5.63967 5.70013 5.73448 5.76129 5.87513 5.94419 5.97286 6.07405 6.11779 6.17536 6.20267 6.42270 6.50934 6.67963 6.75874 6.91740 7.04568 7.33030 7.33787 7.37666 7.64178 7.74070 7.97656 8.08173 8.42804 8.88745 8.97637 9.58878 11.06175 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.030208 B = 0.002663 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.688832 B =10510.527095 C =10778.127593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.178 4.178 3 C -0.004 4.004 4 C 0.014 3.986 5 H 0.088 0.912 6 C -0.113 4.113 7 C -0.151 4.151 8 C 0.170 3.830 9 N -0.282 5.282 10 N -0.313 5.313 11 C 0.363 3.637 12 N -0.467 5.467 13 C 0.070 3.930 14 C -0.103 4.103 15 C 0.046 3.954 16 C -0.511 4.511 17 H 0.055 0.945 18 C 0.061 3.939 19 N -0.891 5.891 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.105 4.105 25 C 0.074 3.926 26 N -0.468 5.468 27 C 0.078 3.922 28 H 0.217 0.783 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.045 0.955 37 H 0.055 0.945 38 H 0.045 0.955 39 H 0.100 0.900 40 H 0.026 0.974 41 H 0.260 0.740 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.046 0.954 46 H 0.078 0.922 47 H 0.102 0.898 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.642 1.181 -5.129 23.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.178 4.178 3 C -0.042 4.042 4 C -0.007 4.007 5 H 0.106 0.894 6 C -0.152 4.152 7 C -0.208 4.208 8 C -0.097 4.097 9 N -0.122 5.122 10 N -0.157 5.157 11 C 0.007 3.993 12 N -0.194 5.194 13 C -0.056 4.056 14 C -0.141 4.141 15 C 0.028 3.972 16 C -0.549 4.549 17 H 0.073 0.927 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.718 3.282 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.143 4.143 25 C -0.053 4.053 26 N -0.160 5.160 27 C -0.065 4.065 28 H 0.233 0.767 29 H 0.120 0.880 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.118 0.882 40 H 0.044 0.956 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.064 0.936 46 H 0.096 0.904 47 H 0.120 0.880 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.148 2.127 -5.197 22.849 hybrid contribution 0.346 -1.336 0.523 1.475 sum -21.802 0.791 -4.675 22.311 Atomic orbital electron populations 1.24867 0.95867 1.00898 1.01106 1.22914 0.94180 1.00487 1.00249 1.18706 0.84694 1.00794 0.99988 1.19506 0.84140 1.00046 0.97003 0.89422 1.21594 1.01514 1.00032 0.92017 1.21759 1.01500 0.98275 0.99285 1.24392 0.96316 0.84044 1.04972 1.73940 0.95501 1.24553 1.18251 1.74711 1.13841 1.07808 1.19296 1.22732 0.85274 0.89983 1.01303 1.58956 1.06023 1.46063 1.08337 1.22389 0.95494 0.98782 0.88930 1.21739 0.93174 0.96434 1.02777 1.18716 0.92226 0.96765 0.89535 1.21162 1.13598 1.05779 1.14374 0.92655 1.24974 0.97451 0.95355 0.96231 1.69864 1.37799 1.25302 1.20019 0.86624 0.82309 0.81801 0.77425 1.20758 1.21304 1.19986 1.21726 0.94658 0.97437 1.00479 1.22189 0.93856 1.00331 0.88922 1.46241 1.06545 1.11676 1.51565 1.22023 1.01056 0.80844 1.02554 0.76661 0.88018 0.89329 0.90767 0.90309 0.92962 0.92903 0.92297 0.93682 0.92674 0.93647 0.88209 0.95595 0.92990 0.92337 0.92331 0.92497 0.93553 0.90366 0.87976 0.89923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.59 19.25 29.55 0.57 -1.02 16 2 C -0.18 -1.58 12.23 -37.12 -0.45 -2.03 16 3 C 0.00 -0.04 5.17 -29.52 -0.15 -0.19 16 4 C 0.01 0.13 2.21 -91.77 -0.20 -0.07 16 5 H 0.09 0.69 7.06 -51.93 -0.37 0.32 16 6 C -0.11 -1.01 5.28 -26.73 -0.14 -1.15 16 7 C -0.15 -1.34 9.73 37.16 0.36 -0.98 16 8 C 0.17 2.24 5.56 -154.01 -0.86 1.39 16 9 N -0.28 -4.71 12.18 32.99 0.40 -4.31 16 10 N -0.31 -5.94 12.19 30.31 0.37 -5.57 16 11 C 0.36 6.26 6.41 -318.89 -2.04 4.21 16 12 N -0.47 -8.43 4.65 -174.56 -0.81 -9.24 16 13 C 0.07 1.39 5.38 -3.84 -0.02 1.37 16 14 C -0.10 -2.33 5.12 -26.65 -0.14 -2.47 16 15 C 0.05 1.11 2.16 -91.65 -0.20 0.91 16 16 C -0.51 -13.59 8.56 -34.44 -0.29 -13.89 16 17 H 0.06 1.45 7.74 -52.48 -0.41 1.05 16 18 C 0.06 1.65 5.31 -17.82 -0.09 1.55 16 19 N -0.89 -24.92 11.37 55.43 0.63 -24.29 16 20 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 24 C -0.11 -2.11 5.32 -26.65 -0.14 -2.25 16 25 C 0.07 1.35 5.38 -3.83 -0.02 1.33 16 26 N -0.47 -6.37 3.21 -121.46 -0.39 -6.76 16 27 C 0.08 0.74 10.82 59.85 0.65 1.39 16 28 H 0.22 0.91 7.80 -54.10 -0.42 0.49 16 29 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.58 7.23 -51.93 -0.38 0.20 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.59 7.38 -51.93 -0.38 0.20 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.05 1.03 8.10 -51.93 -0.42 0.61 16 38 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.10 2.54 6.17 -51.93 -0.32 2.22 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 45 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.10 1.05 8.12 -51.93 -0.42 0.63 16 48 H 0.08 0.56 7.45 -51.93 -0.39 0.18 16 LS Contribution 389.53 15.07 5.87 5.87 Total: -1.00 -30.55 389.53 -10.26 -40.81 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -8.13 Total: -0.50 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -3.18 Total: -11.89 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: 0.20 Total: -50.17 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.55 -10.26 -40.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519188641.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.827 kcal (2) G-P(sol) polarization free energy of solvation -30.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds