Wall clock time and date at job start Tue Mar 31 2020 11:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47224 * 43.06301 * 3 2 1 5 5 H 1.08996 * 109.47391 * 304.99620 * 4 3 2 6 6 C 1.53000 * 109.47389 * 65.00021 * 4 3 2 7 7 C 1.53002 * 109.47548 * 184.99935 * 6 4 3 8 8 C 1.50700 * 109.47054 * 184.99813 * 4 3 2 9 9 N 1.30289 * 126.35149 * 299.68815 * 8 4 3 10 10 N 1.28535 * 110.05489 * 179.82161 * 9 8 4 11 11 C 1.31216 * 109.85995 * 0.45339 * 10 9 8 12 12 N 1.38569 * 126.47055 * 179.72851 * 11 10 9 13 13 C 1.46845 * 111.00209 * 62.31481 * 12 11 10 14 14 C 1.53035 * 109.52855 * 174.16053 * 13 12 11 15 15 C 1.53120 * 109.27911 * 59.17136 * 14 13 12 16 16 C 1.50700 * 109.52112 * 182.44345 * 15 14 13 17 17 H 1.08003 * 119.99592 * 119.69001 * 16 15 14 18 18 C 1.37877 * 120.00436 * 299.68164 * 16 15 14 19 19 N 1.31519 * 119.99601 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00124 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47085 * 90.00601 * 20 18 16 22 22 H 1.48503 * 109.46922 * 210.00519 * 20 18 16 23 23 H 1.48502 * 109.47168 * 330.00271 * 20 18 16 24 24 C 1.53116 * 109.16387 * 302.35122 * 15 14 13 25 25 C 1.46847 * 111.00291 * 298.10063 * 12 11 10 26 26 N 1.36451 * 107.05274 * 359.72932 * 11 10 9 27 27 C 1.46501 * 127.13687 * 179.97438 * 26 11 10 28 28 H 4.44642 * 5.63380 * 180.02562 * 4 1 2 29 29 H 1.09004 * 109.47081 * 163.06300 * 3 2 1 30 30 H 1.09000 * 109.47381 * 283.06044 * 3 2 1 31 31 H 1.09004 * 109.47044 * 305.00343 * 6 4 3 32 32 H 1.08999 * 109.47060 * 64.99505 * 6 4 3 33 33 H 1.08996 * 109.46979 * 300.00314 * 7 6 4 34 34 H 1.09000 * 109.46824 * 59.99963 * 7 6 4 35 35 H 1.08993 * 109.47050 * 179.97438 * 7 6 4 36 36 H 1.09007 * 109.46252 * 294.17127 * 13 12 11 37 37 H 1.08997 * 109.46434 * 54.13797 * 13 12 11 38 38 H 1.09005 * 109.49973 * 299.23908 * 14 13 12 39 39 H 1.08993 * 109.50748 * 179.12113 * 14 13 12 40 40 H 1.09006 * 109.51846 * 62.26019 * 15 14 13 41 41 H 0.96998 * 119.99637 * 180.02562 * 19 18 16 42 42 H 1.08998 * 109.50311 * 297.70958 * 24 15 14 43 43 H 1.09000 * 109.50068 * 177.59001 * 24 15 14 44 44 H 1.08997 * 109.46120 * 305.85544 * 25 12 11 45 45 H 1.08998 * 109.46221 * 65.82487 * 25 12 11 46 46 H 1.08991 * 109.47064 * 265.13065 * 27 26 11 47 47 H 1.09004 * 109.47070 * 25.12874 * 27 26 11 48 48 H 1.09000 * 109.47294 * 145.12772 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.0530 -0.9849 5 1 2.7224 -2.0218 -0.7380 6 6 2.7516 -0.6603 -2.4072 7 6 3.1523 -1.7735 -3.3773 8 6 4.6585 -1.1381 -0.8957 9 7 5.5019 -0.1731 -1.1296 10 7 6.7060 -0.5884 -0.9568 11 6 6.6955 -1.8539 -0.6098 12 7 7.8022 -2.6443 -0.3443 13 6 8.5536 -2.1281 0.8070 14 6 9.6801 -3.1016 1.1607 15 6 10.6073 -3.2624 -0.0472 16 6 11.6845 -4.2658 0.2749 17 1 11.7786 -5.1654 -0.3154 18 6 12.5502 -4.0355 1.3230 19 7 12.4354 -2.9402 2.0420 20 14 13.8860 -5.2789 1.7218 21 1 15.1157 -4.9462 0.9587 22 1 14.1804 -5.2396 3.1768 23 1 13.4236 -6.6394 1.3469 24 6 9.7910 -3.7549 -1.2454 25 6 8.6613 -2.7623 -1.5294 26 7 5.3890 -2.2443 -0.5599 27 6 4.8754 -3.5731 -0.2182 28 1 -1.0498 -0.0001 -0.0004 29 1 3.0089 0.9840 -0.2994 30 1 3.0095 -0.2314 1.0011 31 1 1.6726 -0.5120 -2.4499 32 1 3.2567 0.2643 -2.6865 33 1 4.2312 -1.9218 -3.3346 34 1 2.6471 -2.6981 -3.0979 35 1 2.8634 -1.4940 -4.3904 36 1 8.9789 -1.1561 0.5568 37 1 7.8836 -2.0224 1.6602 38 1 9.2547 -4.0700 1.4243 39 1 10.2472 -2.7106 2.0053 40 1 11.0630 -2.3017 -0.2870 41 1 13.0447 -2.7780 2.7792 42 1 9.3674 -4.7335 -1.0196 43 1 10.4374 -3.8304 -2.1197 44 1 8.0694 -3.1174 -2.3730 45 1 9.0860 -1.7874 -1.7686 46 1 4.7096 -4.1444 -1.1314 47 1 5.6001 -4.0925 0.4088 48 1 3.9344 -3.4709 0.3225 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001519188641.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:04 Heat of formation + Delta-G solvation = 106.439794 kcal Electronic energy + Delta-G solvation = -26778.943122 eV Core-core repulsion = 23256.650391 eV Total energy + Delta-G solvation = -3522.292731 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.09170 -39.97513 -38.04338 -36.07043 -35.61786 -33.95065 -33.26893 -31.68473 -31.22075 -29.69684 -28.49177 -27.49222 -25.66268 -24.43512 -23.91354 -23.67137 -22.07497 -21.14093 -20.19062 -18.95226 -18.52884 -18.22147 -17.53222 -17.22658 -16.55834 -16.38279 -15.79693 -15.36412 -15.09409 -15.07286 -14.70424 -14.62941 -14.46699 -14.34491 -14.07847 -14.04647 -13.67574 -13.25647 -13.07491 -12.92120 -12.76806 -12.63526 -12.47272 -12.39619 -12.23765 -12.13016 -11.99016 -11.88344 -11.61429 -11.39009 -11.21293 -11.04486 -10.97565 -10.91247 -10.74730 -10.40146 -10.02729 -9.83816 -8.06787 -6.19968 0.64233 1.21525 1.43569 1.44769 1.54455 1.69009 1.97051 1.97864 2.45574 2.72209 3.12312 3.21022 3.50993 3.73000 3.81639 3.91684 3.98737 4.08666 4.12364 4.18094 4.35317 4.39395 4.40887 4.46995 4.52329 4.57305 4.62464 4.65369 4.66769 4.71009 4.86753 4.90920 4.95788 4.99326 5.02871 5.06783 5.17779 5.20625 5.21954 5.23643 5.35076 5.48500 5.58965 5.67460 5.73325 5.99527 6.13776 6.28692 6.39013 6.75224 6.91385 7.48246 7.66657 8.98388 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.030208 B = 0.002663 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.688832 B =10510.527095 C =10778.127593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.214 4.214 3 C 0.001 3.999 4 C 0.018 3.982 5 H 0.115 0.885 6 C -0.108 4.108 7 C -0.148 4.148 8 C 0.196 3.804 9 N -0.317 5.317 10 N -0.350 5.350 11 C 0.344 3.656 12 N -0.455 5.455 13 C 0.086 3.914 14 C -0.089 4.089 15 C 0.042 3.958 16 C -0.528 4.528 17 H 0.057 0.943 18 C 0.012 3.988 19 N -0.919 5.919 20 Si 0.954 3.046 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.266 1.266 24 C -0.093 4.093 25 C 0.082 3.918 26 N -0.461 5.461 27 C 0.068 3.932 28 H 0.246 0.754 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.059 0.941 33 H 0.024 0.976 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.021 0.979 37 H 0.067 0.933 38 H 0.046 0.954 39 H 0.069 0.931 40 H -0.012 1.012 41 H 0.260 0.740 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.080 0.920 45 H 0.027 0.973 46 H 0.098 0.902 47 H 0.095 0.905 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.709 -0.651 -5.539 26.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.214 4.214 3 C -0.037 4.037 4 C -0.003 4.003 5 H 0.133 0.867 6 C -0.147 4.147 7 C -0.205 4.205 8 C -0.073 4.073 9 N -0.157 5.157 10 N -0.194 5.194 11 C -0.014 4.014 12 N -0.181 5.181 13 C -0.041 4.041 14 C -0.128 4.128 15 C 0.023 3.977 16 C -0.566 4.566 17 H 0.075 0.925 18 C -0.187 4.187 19 N -0.559 5.559 20 Si 0.780 3.220 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.190 1.190 24 C -0.131 4.131 25 C -0.045 4.045 26 N -0.152 5.152 27 C -0.073 4.073 28 H 0.263 0.737 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.078 0.922 33 H 0.043 0.957 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.039 0.961 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.006 0.994 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.099 0.901 45 H 0.045 0.955 46 H 0.117 0.883 47 H 0.113 0.887 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -25.236 0.276 -5.617 25.855 hybrid contribution 1.165 -0.717 0.627 1.505 sum -24.071 -0.441 -4.990 24.587 Atomic orbital electron populations 1.25643 0.96610 0.99011 0.99271 1.22911 0.94320 1.02210 1.01941 1.18537 0.85515 0.99993 0.99612 1.19736 0.81311 1.01625 0.97612 0.86748 1.21558 1.02357 0.99261 0.91498 1.21741 0.99799 0.99124 0.99823 1.25105 0.97518 0.82926 1.01712 1.73871 0.95348 1.26120 1.20374 1.74603 1.15474 1.09074 1.20269 1.22530 0.86071 0.89839 1.02943 1.58862 1.05933 1.45852 1.07434 1.22063 0.95014 0.96693 0.90353 1.21451 0.93459 0.96776 1.01100 1.18689 0.92647 0.94560 0.91785 1.21525 1.14433 1.06199 1.14411 0.92485 1.25749 0.99643 0.97063 0.96228 1.70016 1.38590 1.26888 1.20388 0.85625 0.79505 0.79849 0.77069 1.20540 1.21126 1.18991 1.21555 0.94776 0.97948 0.98843 1.22062 0.93697 0.98836 0.89863 1.46427 1.05109 1.13152 1.50558 1.22413 1.02139 0.78811 1.03932 0.73742 0.89307 0.89612 0.88913 0.92170 0.95658 0.90934 0.91588 0.96066 0.91458 0.93545 0.91306 0.99430 0.93103 0.91530 0.91769 0.90114 0.95504 0.88314 0.88674 0.86603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.20 19.25 74.32 1.43 -0.76 16 2 C -0.21 -3.25 12.23 31.12 0.38 -2.87 16 3 C 0.00 0.02 5.17 28.79 0.15 0.17 16 4 C 0.02 0.30 2.21 -11.54 -0.03 0.27 16 5 H 0.11 1.33 7.06 -2.39 -0.02 1.31 16 6 C -0.11 -1.71 5.28 30.60 0.16 -1.55 16 7 C -0.15 -2.27 9.73 71.98 0.70 -1.57 16 8 C 0.20 4.94 5.56 137.64 0.76 5.70 16 9 N -0.32 -10.73 12.18 -49.54 -0.60 -11.33 16 10 N -0.35 -13.61 12.19 -58.01 -0.71 -14.32 16 11 C 0.34 11.78 6.41 260.12 1.67 13.45 16 12 N -0.45 -16.42 4.65 -706.17 -3.28 -19.70 16 13 C 0.09 3.52 5.38 86.33 0.46 3.98 16 14 C -0.09 -4.19 5.12 30.65 0.16 -4.03 16 15 C 0.04 2.08 2.16 -11.46 -0.02 2.05 16 16 C -0.53 -28.52 8.56 25.60 0.22 -28.30 16 17 H 0.06 2.99 7.74 -2.91 -0.02 2.97 16 18 C 0.01 0.63 5.31 84.65 0.45 1.08 16 19 N -0.92 -53.01 11.37 21.45 0.24 -52.76 16 20 Si 0.95 43.18 29.54 68.60 2.03 45.21 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 22 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 24 C -0.09 -3.76 5.32 30.65 0.16 -3.60 16 25 C 0.08 3.03 5.38 86.33 0.46 3.50 16 26 N -0.46 -11.81 3.21 -538.20 -1.73 -13.54 16 27 C 0.07 1.08 10.82 127.77 1.38 2.46 16 28 H 0.25 1.00 7.80 -4.43 -0.03 0.96 16 29 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.09 1.16 7.23 -2.39 -0.02 1.14 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.02 0.52 7.38 -2.39 -0.02 0.50 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 36 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.07 2.57 8.10 -2.39 -0.02 2.55 16 38 H 0.05 2.12 8.14 -2.38 -0.02 2.11 16 39 H 0.07 3.67 6.17 -2.39 -0.01 3.65 16 40 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 41 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 42 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 43 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.08 2.61 8.10 -2.39 -0.02 2.59 16 45 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.09 1.71 8.12 -2.39 -0.02 1.69 16 48 H 0.12 1.08 7.45 -2.39 -0.02 1.06 16 Total: -1.00 -68.93 389.53 5.37 -63.56 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.92 Total: 12.90 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: 8.50 Total: -10.01 kcal Atomic # 7 Polarization: -105.58 SS G_CDS: -6.07 Total: -111.66 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -68.93 5.37 -63.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519188641.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.996 kcal (2) G-P(sol) polarization free energy of solvation -68.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds