Wall clock time and date at job start Tue Mar 31 2020 11:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47197 * 350.60083 * 3 2 1 5 5 H 1.08998 * 109.47295 * 54.89594 * 4 3 2 6 6 C 1.53003 * 109.46995 * 294.89444 * 4 3 2 7 7 C 1.52997 * 109.46849 * 174.31841 * 6 4 3 8 8 C 1.50696 * 109.46740 * 174.89435 * 4 3 2 9 9 N 1.30294 * 126.35023 * 59.69224 * 8 4 3 10 10 N 1.28527 * 110.05786 * 179.81983 * 9 8 4 11 11 C 1.31218 * 109.85479 * 0.44662 * 10 9 8 12 12 N 1.38581 * 126.47231 * 179.69535 * 11 10 9 13 13 C 1.46849 * 111.00033 * 235.83855 * 12 11 10 14 14 C 1.53039 * 109.52521 * 185.84111 * 13 12 11 15 15 C 1.53125 * 109.27603 * 300.81641 * 14 13 12 16 16 C 1.53123 * 109.15768 * 57.65436 * 15 14 13 17 17 H 1.08993 * 109.50672 * 62.28742 * 16 15 14 18 18 C 1.50708 * 109.53347 * 182.38613 * 16 15 14 19 19 H 1.08002 * 119.99886 * 119.82177 * 18 16 15 20 20 C 1.37876 * 119.99870 * 299.82527 * 18 16 15 21 21 N 1.31517 * 119.99879 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 119.99879 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47273 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47190 * 119.99723 * 22 20 18 25 25 H 1.48504 * 109.47091 * 239.99807 * 22 20 18 26 26 C 1.46845 * 110.99856 * 0.04424 * 12 11 10 27 27 N 1.36450 * 107.05603 * 359.73189 * 11 10 9 28 28 C 1.46506 * 127.13686 * 180.02562 * 27 11 10 29 29 H 4.44644 * 5.63325 * 180.02562 * 4 1 2 30 30 H 1.09007 * 109.46624 * 230.60162 * 3 2 1 31 31 H 1.08997 * 109.46829 * 110.60428 * 3 2 1 32 32 H 1.09006 * 109.46794 * 294.31387 * 6 4 3 33 33 H 1.08998 * 109.47371 * 54.31398 * 6 4 3 34 34 H 1.08999 * 109.46924 * 185.55037 * 7 6 4 35 35 H 1.09000 * 109.47027 * 305.54414 * 7 6 4 36 36 H 1.09002 * 109.47755 * 65.54833 * 7 6 4 37 37 H 1.09005 * 109.45821 * 305.84994 * 13 12 11 38 38 H 1.08996 * 109.46669 * 65.82192 * 13 12 11 39 39 H 1.08997 * 109.50941 * 180.87810 * 14 13 12 40 40 H 1.09001 * 109.50824 * 60.75267 * 14 13 12 41 41 H 1.09004 * 109.52141 * 297.75038 * 15 14 13 42 42 H 1.09000 * 109.52434 * 177.55811 * 15 14 13 43 43 H 0.97001 * 119.99586 * 180.02562 * 21 20 18 44 44 H 1.09006 * 109.46395 * 294.17662 * 26 12 11 45 45 H 1.08993 * 109.46340 * 54.15954 * 26 12 11 46 46 H 1.08993 * 109.47435 * 269.97593 * 28 27 11 47 47 H 1.09006 * 109.46700 * 29.98080 * 28 27 11 48 48 H 1.09000 * 109.46662 * 149.97469 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1567 -1.4222 0.2356 5 1 2.7210 -2.0920 -0.5057 6 6 2.7544 -1.8828 1.6381 7 6 3.1398 -3.3519 1.8225 8 6 4.6584 -1.4439 0.1111 9 7 5.5029 -0.7615 0.8313 10 7 6.7066 -1.0204 0.4625 11 6 6.6940 -1.8819 -0.5271 12 7 7.7993 -2.3928 -1.1887 13 6 7.7061 -2.1505 -2.6341 14 6 8.8650 -2.8518 -3.3462 15 6 10.1918 -2.3128 -2.8040 16 6 10.2428 -2.5339 -1.2897 17 1 10.2066 -3.6022 -1.0765 18 6 11.5198 -1.9538 -0.7384 19 1 11.4807 -1.1697 0.0032 20 6 12.7380 -2.4240 -1.1811 21 7 12.7856 -3.3791 -2.0839 22 14 14.3209 -1.7054 -0.4973 23 1 13.9969 -0.6523 0.4983 24 1 15.1101 -2.7798 0.1570 25 1 15.1140 -1.1125 -1.6040 26 6 9.0438 -1.8419 -0.6373 27 7 5.3870 -2.1792 -0.7823 28 6 4.8712 -3.0963 -1.8018 29 1 -1.0497 -0.0005 -0.0001 30 1 3.0090 0.6531 0.7942 31 1 3.0092 0.3625 -0.9619 32 1 3.2706 -1.2756 2.3818 33 1 1.6773 -1.7713 1.7621 34 1 2.7660 -3.7078 2.7826 35 1 2.7027 -3.9457 1.0198 36 1 4.2252 -3.4489 1.7966 37 1 6.7599 -2.5423 -3.0076 38 1 7.7566 -1.0789 -2.8267 39 1 8.8044 -2.6588 -4.4172 40 1 8.8073 -3.9251 -3.1653 41 1 10.2671 -1.2468 -3.0192 42 1 11.0199 -2.8403 -3.2773 43 1 13.6426 -3.7102 -2.3950 44 1 9.0881 -0.7716 -0.8392 45 1 9.0695 -2.0097 0.4394 46 1 4.6984 -2.5493 -2.7286 47 1 5.5979 -3.8894 -1.9780 48 1 3.9337 -3.5325 -1.4571 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519189028.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:08 Heat of formation + Delta-G solvation = 123.417922 kcal Electronic energy + Delta-G solvation = -26942.284569 eV Core-core repulsion = 23420.728065 eV Total energy + Delta-G solvation = -3521.556504 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.82132 -38.52536 -37.15816 -34.93093 -33.81002 -33.16739 -31.94970 -30.35084 -30.01151 -28.35847 -27.58608 -25.19568 -24.73766 -23.79549 -22.82245 -21.57485 -20.82702 -19.85814 -18.72558 -18.30279 -17.26950 -16.51691 -16.26704 -15.71721 -15.34896 -14.65189 -14.51554 -14.42940 -14.23791 -14.05174 -13.93394 -13.30290 -13.23762 -12.91912 -12.85641 -12.59963 -12.55344 -12.24799 -11.89825 -11.71229 -11.49353 -11.24471 -11.03878 -10.98078 -10.84652 -10.70346 -10.53611 -10.31650 -10.26566 -10.19982 -10.03009 -9.93769 -9.68717 -9.40743 -9.22311 -8.77508 -8.34321 -7.78026 -6.01843 -4.07103 1.93166 2.34301 2.59368 2.59732 3.11193 3.30464 3.38708 3.44187 3.94695 4.06105 4.31693 4.45565 4.49303 4.57235 4.76099 4.88073 4.95300 5.13568 5.16197 5.26439 5.27826 5.29849 5.38288 5.42286 5.47493 5.60944 5.68367 5.72213 5.74168 5.80179 5.88290 5.95671 6.02960 6.14437 6.16418 6.30961 6.39439 6.45214 6.59705 6.78122 6.86640 6.99622 7.22350 7.34325 7.35448 7.64024 7.71962 7.96565 8.07568 8.40044 8.96475 9.06161 9.57709 11.04761 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.024977 B = 0.002876 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.740240 B = 9733.901977 C =10104.303981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.177 4.177 3 C -0.004 4.004 4 C 0.017 3.983 5 H 0.085 0.915 6 C -0.114 4.114 7 C -0.151 4.151 8 C 0.160 3.840 9 N -0.275 5.275 10 N -0.324 5.324 11 C 0.379 3.621 12 N -0.452 5.452 13 C 0.059 3.941 14 C -0.116 4.116 15 C -0.115 4.115 16 C 0.054 3.946 17 H 0.036 0.964 18 C -0.511 4.511 19 H 0.058 0.942 20 C 0.063 3.937 21 N -0.890 5.890 22 Si 0.892 3.108 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.285 1.285 26 C 0.084 3.916 27 N -0.488 5.488 28 C 0.075 3.925 29 H 0.216 0.784 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.040 0.960 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.035 0.965 42 H 0.096 0.904 43 H 0.259 0.741 44 H 0.041 0.959 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.096 0.904 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.930 0.419 -1.236 22.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.177 4.177 3 C -0.041 4.041 4 C -0.004 4.004 5 H 0.104 0.896 6 C -0.152 4.152 7 C -0.208 4.208 8 C -0.107 4.107 9 N -0.114 5.114 10 N -0.169 5.169 11 C 0.023 3.977 12 N -0.175 5.175 13 C -0.067 4.067 14 C -0.154 4.154 15 C -0.153 4.153 16 C 0.035 3.965 17 H 0.054 0.946 18 C -0.550 4.550 19 H 0.076 0.924 20 C -0.138 4.138 21 N -0.529 5.529 22 Si 0.720 3.280 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.211 1.211 26 C -0.041 4.041 27 N -0.184 5.184 28 C -0.068 4.068 29 H 0.233 0.767 30 H 0.120 0.880 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.054 0.946 42 H 0.115 0.885 43 H 0.069 0.931 44 H 0.059 0.941 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.115 0.885 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -22.185 0.735 -0.248 22.198 hybrid contribution 0.227 0.033 -0.910 0.939 sum -21.958 0.768 -1.159 22.002 Atomic orbital electron populations 1.24855 0.95861 1.00555 1.01666 1.22953 0.94218 1.00539 1.00010 1.18711 0.84586 0.96667 1.04173 1.19457 0.84348 0.96957 0.99663 0.89643 1.21603 1.01427 0.97116 0.95070 1.21760 1.01792 0.95778 1.01491 1.24236 0.96105 0.97263 0.93130 1.73884 0.95443 1.20237 1.21838 1.74745 1.13325 1.14469 1.14350 1.23102 0.83348 0.94196 0.97067 1.58848 1.00021 1.54546 1.04101 1.22322 1.00028 0.99428 0.84963 1.21717 0.95728 1.00369 0.97617 1.21731 0.95003 0.99088 0.99450 1.18760 0.89954 0.96613 0.91197 0.94576 1.21124 0.90174 1.20466 1.23249 0.92352 1.24919 0.99016 0.94884 0.94991 1.69889 1.25169 1.27640 1.30185 0.86527 0.83402 0.79112 0.78948 1.19663 1.21026 1.21090 1.22415 0.84813 0.97162 0.99706 1.45998 1.06042 1.36760 1.29602 1.22091 1.01290 0.93375 0.90063 0.76696 0.88033 0.89431 0.90292 0.90912 0.92352 0.93065 0.92731 0.91863 0.94146 0.92532 0.91673 0.94623 0.88550 0.93065 0.94085 0.90547 0.90519 0.88502 0.89540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.65 19.25 29.55 0.57 -1.08 16 2 C -0.18 -1.61 12.23 -37.12 -0.45 -2.07 16 3 C 0.00 -0.04 5.17 -29.52 -0.15 -0.19 16 4 C 0.02 0.17 2.20 -91.77 -0.20 -0.04 16 5 H 0.09 0.70 6.94 -51.93 -0.36 0.34 16 6 C -0.11 -1.08 5.28 -26.73 -0.14 -1.22 16 7 C -0.15 -1.44 9.64 37.16 0.36 -1.08 16 8 C 0.16 2.20 5.69 -154.02 -0.88 1.33 16 9 N -0.28 -4.83 12.18 32.99 0.40 -4.42 16 10 N -0.32 -6.49 11.24 30.31 0.34 -6.15 16 11 C 0.38 6.80 7.22 -318.88 -2.30 4.50 16 12 N -0.45 -8.44 4.70 -174.55 -0.82 -9.26 16 13 C 0.06 0.96 5.28 -3.83 -0.02 0.94 16 14 C -0.12 -2.04 6.09 -26.65 -0.16 -2.20 16 15 C -0.11 -2.56 5.03 -26.60 -0.13 -2.69 16 16 C 0.05 1.31 2.26 -91.68 -0.21 1.10 16 17 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 18 C -0.51 -13.86 8.56 -34.44 -0.29 -14.16 16 19 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 21 N -0.89 -24.75 11.36 55.43 0.63 -24.12 16 22 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 26 C 0.08 1.85 4.10 -3.83 -0.02 1.83 16 27 N -0.49 -6.77 3.21 -121.46 -0.39 -7.16 16 28 C 0.08 0.70 9.15 59.85 0.55 1.24 16 29 H 0.22 0.95 7.80 -54.11 -0.42 0.53 16 30 H 0.10 1.02 8.14 -51.92 -0.42 0.60 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.60 7.22 -51.93 -0.37 0.23 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.05 0.66 7.58 -51.93 -0.39 0.27 16 37 H 0.06 0.82 5.21 -51.93 -0.27 0.55 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.10 2.41 6.17 -51.93 -0.32 2.09 16 43 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 44 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.08 1.78 7.92 -51.93 -0.41 1.36 16 46 H 0.08 0.58 7.75 -51.93 -0.40 0.18 16 47 H 0.10 0.93 7.65 -51.93 -0.40 0.54 16 48 H 0.09 0.58 7.23 -51.93 -0.38 0.21 16 LS Contribution 383.07 15.07 5.77 5.77 Total: -1.00 -31.03 383.07 -10.58 -41.61 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -7.92 Total: -0.27 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -3.58 Total: -12.17 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: 0.16 Total: -51.12 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.03 -10.58 -41.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519189028.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.029 kcal (2) G-P(sol) polarization free energy of solvation -31.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds