Wall clock time and date at job start Tue Mar 31 2020 11:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47197 * 350.60083 * 3 2 1 5 5 H 1.08998 * 109.47295 * 54.89594 * 4 3 2 6 6 C 1.53003 * 109.46995 * 294.89444 * 4 3 2 7 7 C 1.52997 * 109.46849 * 174.31841 * 6 4 3 8 8 C 1.50696 * 109.46740 * 174.89435 * 4 3 2 9 9 N 1.30294 * 126.35023 * 59.69224 * 8 4 3 10 10 N 1.28527 * 110.05786 * 179.81983 * 9 8 4 11 11 C 1.31218 * 109.85479 * 0.44662 * 10 9 8 12 12 N 1.38581 * 126.47231 * 179.69535 * 11 10 9 13 13 C 1.46849 * 111.00033 * 235.83855 * 12 11 10 14 14 C 1.53039 * 109.52521 * 185.84111 * 13 12 11 15 15 C 1.53125 * 109.27603 * 300.81641 * 14 13 12 16 16 C 1.53123 * 109.15768 * 57.65436 * 15 14 13 17 17 H 1.08993 * 109.50672 * 62.28742 * 16 15 14 18 18 C 1.50708 * 109.53347 * 182.38613 * 16 15 14 19 19 H 1.08002 * 119.99886 * 119.82177 * 18 16 15 20 20 C 1.37876 * 119.99870 * 299.82527 * 18 16 15 21 21 N 1.31517 * 119.99879 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 119.99879 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47273 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47190 * 119.99723 * 22 20 18 25 25 H 1.48504 * 109.47091 * 239.99807 * 22 20 18 26 26 C 1.46845 * 110.99856 * 0.04424 * 12 11 10 27 27 N 1.36450 * 107.05603 * 359.73189 * 11 10 9 28 28 C 1.46506 * 127.13686 * 180.02562 * 27 11 10 29 29 H 4.44644 * 5.63325 * 180.02562 * 4 1 2 30 30 H 1.09007 * 109.46624 * 230.60162 * 3 2 1 31 31 H 1.08997 * 109.46829 * 110.60428 * 3 2 1 32 32 H 1.09006 * 109.46794 * 294.31387 * 6 4 3 33 33 H 1.08998 * 109.47371 * 54.31398 * 6 4 3 34 34 H 1.08999 * 109.46924 * 185.55037 * 7 6 4 35 35 H 1.09000 * 109.47027 * 305.54414 * 7 6 4 36 36 H 1.09002 * 109.47755 * 65.54833 * 7 6 4 37 37 H 1.09005 * 109.45821 * 305.84994 * 13 12 11 38 38 H 1.08996 * 109.46669 * 65.82192 * 13 12 11 39 39 H 1.08997 * 109.50941 * 180.87810 * 14 13 12 40 40 H 1.09001 * 109.50824 * 60.75267 * 14 13 12 41 41 H 1.09004 * 109.52141 * 297.75038 * 15 14 13 42 42 H 1.09000 * 109.52434 * 177.55811 * 15 14 13 43 43 H 0.97001 * 119.99586 * 180.02562 * 21 20 18 44 44 H 1.09006 * 109.46395 * 294.17662 * 26 12 11 45 45 H 1.08993 * 109.46340 * 54.15954 * 26 12 11 46 46 H 1.08993 * 109.47435 * 269.97593 * 28 27 11 47 47 H 1.09006 * 109.46700 * 29.98080 * 28 27 11 48 48 H 1.09000 * 109.46662 * 149.97469 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1567 -1.4222 0.2356 5 1 2.7210 -2.0920 -0.5057 6 6 2.7544 -1.8828 1.6381 7 6 3.1398 -3.3519 1.8225 8 6 4.6584 -1.4439 0.1111 9 7 5.5029 -0.7615 0.8313 10 7 6.7066 -1.0204 0.4625 11 6 6.6940 -1.8819 -0.5271 12 7 7.7993 -2.3928 -1.1887 13 6 7.7061 -2.1505 -2.6341 14 6 8.8650 -2.8518 -3.3462 15 6 10.1918 -2.3128 -2.8040 16 6 10.2428 -2.5339 -1.2897 17 1 10.2066 -3.6022 -1.0765 18 6 11.5198 -1.9538 -0.7384 19 1 11.4807 -1.1697 0.0032 20 6 12.7380 -2.4240 -1.1811 21 7 12.7856 -3.3791 -2.0839 22 14 14.3209 -1.7054 -0.4973 23 1 13.9969 -0.6523 0.4983 24 1 15.1101 -2.7798 0.1570 25 1 15.1140 -1.1125 -1.6040 26 6 9.0438 -1.8419 -0.6373 27 7 5.3870 -2.1792 -0.7823 28 6 4.8712 -3.0963 -1.8018 29 1 -1.0497 -0.0005 -0.0001 30 1 3.0090 0.6531 0.7942 31 1 3.0092 0.3625 -0.9619 32 1 3.2706 -1.2756 2.3818 33 1 1.6773 -1.7713 1.7621 34 1 2.7660 -3.7078 2.7826 35 1 2.7027 -3.9457 1.0198 36 1 4.2252 -3.4489 1.7966 37 1 6.7599 -2.5423 -3.0076 38 1 7.7566 -1.0789 -2.8267 39 1 8.8044 -2.6588 -4.4172 40 1 8.8073 -3.9251 -3.1653 41 1 10.2671 -1.2468 -3.0192 42 1 11.0199 -2.8403 -3.2773 43 1 13.6426 -3.7102 -2.3950 44 1 9.0881 -0.7716 -0.8392 45 1 9.0695 -2.0097 0.4394 46 1 4.6984 -2.5493 -2.7286 47 1 5.5979 -3.8894 -1.9780 48 1 3.9337 -3.5325 -1.4571 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001519189028.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:07 Heat of formation + Delta-G solvation = 108.119057 kcal Electronic energy + Delta-G solvation = -26942.947978 eV Core-core repulsion = 23420.728065 eV Total energy + Delta-G solvation = -3522.219913 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.05356 -40.05591 -38.02545 -36.20038 -35.42567 -33.97999 -33.54596 -31.83470 -31.19636 -29.52076 -28.51698 -27.07777 -25.66990 -25.34839 -23.89689 -23.06961 -22.17039 -20.98068 -20.33527 -18.94783 -18.78657 -17.94484 -17.42702 -17.15861 -16.56293 -16.39172 -15.62858 -15.55220 -15.39329 -15.10137 -14.75756 -14.68355 -14.51117 -14.28090 -14.11524 -14.01886 -13.74931 -13.41464 -13.03301 -12.88718 -12.72455 -12.59951 -12.52528 -12.45795 -12.21453 -11.93107 -11.85853 -11.83391 -11.66327 -11.32171 -11.19581 -11.15595 -11.06823 -10.97697 -10.81813 -10.61208 -10.39771 -9.19615 -8.11537 -6.24081 0.76262 1.24137 1.39524 1.42135 1.53752 1.76298 1.98610 2.00473 2.41750 2.72647 3.16302 3.17107 3.52748 3.69516 3.76101 3.89237 3.99869 4.05346 4.08845 4.10614 4.30719 4.35803 4.39319 4.44424 4.48484 4.53476 4.61557 4.64885 4.67935 4.75348 4.84777 4.92630 4.95736 4.98368 5.01083 5.04839 5.09190 5.21137 5.24338 5.27647 5.34582 5.44187 5.61514 5.66055 5.73189 5.97366 6.11001 6.26725 6.36320 6.76102 6.84543 7.43352 7.79426 8.93720 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.024977 B = 0.002876 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.740240 B = 9733.901977 C =10104.303981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.213 4.213 3 C 0.002 3.998 4 C 0.021 3.979 5 H 0.115 0.885 6 C -0.109 4.109 7 C -0.148 4.148 8 C 0.188 3.812 9 N -0.316 5.316 10 N -0.370 5.370 11 C 0.361 3.639 12 N -0.453 5.453 13 C 0.062 3.938 14 C -0.106 4.106 15 C -0.108 4.108 16 C 0.056 3.944 17 H 0.005 0.995 18 C -0.537 4.537 19 H 0.045 0.955 20 C 0.021 3.979 21 N -0.910 5.910 22 Si 0.952 3.048 23 H -0.273 1.273 24 H -0.279 1.279 25 H -0.276 1.276 26 C 0.107 3.893 27 N -0.479 5.479 28 C 0.060 3.940 29 H 0.246 0.754 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.021 0.979 37 H 0.107 0.893 38 H 0.034 0.966 39 H 0.089 0.911 40 H 0.065 0.935 41 H 0.025 0.975 42 H 0.068 0.932 43 H 0.262 0.738 44 H 0.025 0.975 45 H 0.052 0.948 46 H 0.103 0.897 47 H 0.096 0.904 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.225 -0.141 -2.670 26.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.213 4.213 3 C -0.035 4.035 4 C 0.000 4.000 5 H 0.133 0.867 6 C -0.148 4.148 7 C -0.205 4.205 8 C -0.081 4.081 9 N -0.154 5.154 10 N -0.215 5.215 11 C 0.003 3.997 12 N -0.177 5.177 13 C -0.064 4.064 14 C -0.144 4.144 15 C -0.146 4.146 16 C 0.037 3.963 17 H 0.024 0.976 18 C -0.576 4.576 19 H 0.064 0.936 20 C -0.179 4.179 21 N -0.549 5.549 22 Si 0.778 3.222 23 H -0.198 1.198 24 H -0.204 1.204 25 H -0.202 1.202 26 C -0.019 4.019 27 N -0.174 5.174 28 C -0.081 4.081 29 H 0.263 0.737 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.111 0.889 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.041 0.959 37 H 0.125 0.875 38 H 0.052 0.948 39 H 0.107 0.893 40 H 0.083 0.917 41 H 0.044 0.956 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.043 0.957 45 H 0.070 0.930 46 H 0.121 0.879 47 H 0.114 0.886 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -25.507 0.164 -1.697 25.564 hybrid contribution 1.096 0.198 -0.434 1.195 sum -24.411 0.362 -2.131 24.506 Atomic orbital electron populations 1.25633 0.96596 0.98586 0.99788 1.22928 0.94328 1.02337 1.01732 1.18526 0.85455 0.95906 1.03649 1.19696 0.81409 0.98131 1.00763 0.86686 1.21567 1.02318 0.96697 0.94179 1.21743 0.99698 0.96116 1.02942 1.24988 0.97365 0.94724 0.91034 1.73800 0.95288 1.22471 1.23852 1.74619 1.15138 1.16107 1.15638 1.22905 0.84560 0.94939 0.97267 1.58765 0.99064 1.54486 1.05348 1.22418 1.01463 0.99170 0.83368 1.21608 0.93228 1.00113 0.99421 1.21523 0.97160 0.98281 0.97666 1.18637 0.90133 0.94551 0.93001 0.97641 1.21421 0.92006 1.20627 1.23501 0.93628 1.25609 1.01783 0.95238 0.95255 1.69996 1.25947 1.28249 1.30716 0.85601 0.79802 0.78414 0.78420 1.19801 1.20439 1.20182 1.21869 0.86083 0.95837 0.98152 1.46209 1.04316 1.36786 1.30101 1.22567 1.02545 0.92980 0.90036 0.73744 0.89521 0.89480 0.92421 0.88883 0.91532 0.90889 0.95931 0.87509 0.94777 0.89264 0.91672 0.95578 0.91317 0.92828 0.95683 0.92983 0.87880 0.88569 0.86274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.24 19.25 74.32 1.43 -0.81 16 2 C -0.21 -3.30 12.23 31.13 0.38 -2.92 16 3 C 0.00 0.04 5.17 28.79 0.15 0.19 16 4 C 0.02 0.36 2.20 -11.54 -0.03 0.34 16 5 H 0.12 1.36 6.94 -2.39 -0.02 1.35 16 6 C -0.11 -1.88 5.28 30.59 0.16 -1.71 16 7 C -0.15 -2.53 9.64 71.98 0.69 -1.83 16 8 C 0.19 4.98 5.69 137.64 0.78 5.76 16 9 N -0.32 -11.39 12.18 -49.54 -0.60 -12.00 16 10 N -0.37 -15.45 11.24 -58.01 -0.65 -16.11 16 11 C 0.36 13.06 7.22 260.11 1.88 14.93 16 12 N -0.45 -17.14 4.70 -706.14 -3.32 -20.46 16 13 C 0.06 1.92 5.28 86.33 0.46 2.37 16 14 C -0.11 -3.59 6.09 30.65 0.19 -3.40 16 15 C -0.11 -4.95 5.03 30.68 0.15 -4.80 16 16 C 0.06 2.86 2.26 -11.48 -0.03 2.83 16 17 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 18 C -0.54 -30.51 8.56 25.60 0.22 -30.29 16 19 H 0.05 2.63 7.74 -2.91 -0.02 2.61 16 20 C 0.02 1.15 5.30 84.65 0.45 1.59 16 21 N -0.91 -51.86 11.36 21.45 0.24 -51.61 16 22 Si 0.95 44.42 29.54 68.60 2.03 46.45 16 23 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 24 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 25 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 26 C 0.11 4.97 4.10 86.33 0.35 5.33 16 27 N -0.48 -12.50 3.21 -538.18 -1.73 -14.22 16 28 C 0.06 0.87 9.15 127.77 1.17 2.04 16 29 H 0.25 1.03 7.80 -4.43 -0.03 1.00 16 30 H 0.09 1.73 8.14 -2.38 -0.02 1.72 16 31 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.09 1.26 7.22 -2.39 -0.02 1.25 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 36 H 0.02 0.52 7.58 -2.39 -0.02 0.50 16 37 H 0.11 2.40 5.21 -2.38 -0.01 2.38 16 38 H 0.03 1.11 8.14 -2.39 -0.02 1.10 16 39 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.07 3.53 6.17 -2.39 -0.01 3.52 16 43 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 44 H 0.02 1.21 8.14 -2.38 -0.02 1.19 16 45 H 0.05 2.61 7.92 -2.39 -0.02 2.59 16 46 H 0.10 1.03 7.75 -2.39 -0.02 1.02 16 47 H 0.10 1.50 7.65 -2.38 -0.02 1.48 16 48 H 0.12 1.00 7.23 -2.39 -0.02 0.98 16 Total: -1.00 -72.61 383.07 5.31 -67.30 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.93 Total: 11.04 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: 8.41 Total: -10.38 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -6.06 Total: -114.40 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -72.61 5.31 -67.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519189028.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.419 kcal (2) G-P(sol) polarization free energy of solvation -72.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds