Wall clock time and date at job start Tue Mar 31 2020 11:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47586 * 58.98647 * 3 2 1 5 5 H 1.09004 * 109.47323 * 54.21924 * 4 3 2 6 6 C 1.53006 * 109.47251 * 294.22484 * 4 3 2 7 7 C 1.53007 * 109.46973 * 175.13335 * 6 4 3 8 8 C 1.50697 * 109.47600 * 174.22203 * 4 3 2 9 9 N 1.30299 * 126.34480 * 59.97287 * 8 4 3 10 10 N 1.28530 * 110.05222 * 180.02562 * 9 8 4 11 11 C 1.31217 * 109.86131 * 0.02562 * 10 9 8 12 12 N 1.38582 * 126.47686 * 179.97438 * 11 10 9 13 13 C 1.46847 * 110.99871 * 124.23330 * 12 11 10 14 14 C 1.53048 * 109.57412 * 174.19791 * 13 12 11 15 15 C 1.53123 * 109.27471 * 59.08195 * 14 13 12 16 16 C 1.53120 * 109.21572 * 302.44490 * 15 14 13 17 17 H 1.09002 * 109.49854 * 297.64277 * 16 15 14 18 18 C 1.50697 * 109.50164 * 177.56454 * 16 15 14 19 19 H 1.08000 * 119.99550 * 239.99740 * 18 16 15 20 20 C 1.37882 * 120.00228 * 59.99714 * 18 16 15 21 21 N 1.31505 * 119.99857 * 0.02562 * 20 18 16 22 22 Si 1.86797 * 119.99929 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46953 * 90.00296 * 22 20 18 24 24 H 1.48501 * 109.47364 * 210.00125 * 22 20 18 25 25 H 1.48508 * 109.47309 * 330.00439 * 22 20 18 26 26 C 1.46849 * 110.99465 * 0.02622 * 12 11 10 27 27 N 1.36457 * 107.05263 * 0.22580 * 11 10 9 28 28 C 1.46502 * 127.13414 * 179.77454 * 27 11 10 29 29 H 4.44642 * 5.63405 * 180.02562 * 4 1 2 30 30 H 1.09003 * 109.47345 * 298.98687 * 3 2 1 31 31 H 1.09000 * 109.47385 * 178.99175 * 3 2 1 32 32 H 1.08998 * 109.46858 * 295.12945 * 6 4 3 33 33 H 1.08998 * 109.46885 * 55.13001 * 6 4 3 34 34 H 1.09000 * 109.46561 * 185.50234 * 7 6 4 35 35 H 1.08993 * 109.46836 * 305.50054 * 7 6 4 36 36 H 1.08992 * 109.47005 * 65.50330 * 7 6 4 37 37 H 1.08996 * 109.46088 * 294.17755 * 13 12 11 38 38 H 1.08996 * 109.46401 * 54.16008 * 13 12 11 39 39 H 1.08998 * 109.44978 * 299.17692 * 14 13 12 40 40 H 1.08998 * 109.55879 * 179.05750 * 14 13 12 41 41 H 1.09003 * 109.51981 * 182.50405 * 15 14 13 42 42 H 1.09006 * 109.52108 * 62.37902 * 15 14 13 43 43 H 0.96998 * 120.00250 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.46486 * 65.82347 * 26 12 11 45 45 H 1.08996 * 109.46115 * 305.84824 * 26 12 11 46 46 H 1.09005 * 109.46849 * 90.02406 * 28 27 11 47 47 H 1.09000 * 109.47120 * 210.02044 * 28 27 11 48 48 H 1.08994 * 109.47121 * 330.02296 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1564 -0.7423 -1.2362 5 1 2.7109 -0.3077 -2.1311 6 6 2.7691 -2.2194 -1.1397 7 6 3.1720 -2.9376 -2.4292 8 6 4.6565 -0.6203 -1.3120 9 7 5.5108 -1.0313 -0.4181 10 7 6.7095 -0.7682 -0.8003 11 6 6.6839 -0.1699 -1.9679 12 7 7.7806 0.2651 -2.6949 13 6 7.7836 -0.3183 -4.0425 14 6 8.9221 0.2924 -4.8630 15 6 10.2551 0.0157 -4.1622 16 6 10.2079 0.5911 -2.7441 17 1 10.0792 1.6723 -2.7942 18 6 11.4944 0.2702 -2.0279 19 1 11.4756 -0.3150 -1.1204 20 6 12.6953 0.7238 -2.5311 21 7 12.7179 1.4368 -3.6358 22 14 14.2898 0.3266 -1.6429 23 1 14.8398 -0.9519 -2.1609 24 1 15.2706 1.4173 -1.8746 25 1 14.0268 0.1984 -0.1869 26 6 9.0323 -0.0295 -1.9858 27 7 5.3731 -0.0519 -2.3284 28 6 4.8437 0.5547 -3.5523 29 1 -1.0498 0.0000 -0.0004 30 1 3.0096 -0.4972 0.8989 31 1 3.0089 1.0283 -0.0181 32 1 3.2836 -2.6753 -0.2938 33 1 1.6916 -2.3039 -0.9981 34 1 2.8097 -3.9652 -2.4010 35 1 2.7353 -2.4216 -3.2841 36 1 4.2581 -2.9377 -2.5208 37 1 7.9265 -1.3965 -3.9710 38 1 6.8317 -0.1097 -4.5307 39 1 8.7718 1.3686 -4.9474 40 1 8.9345 -0.1530 -5.8578 41 1 11.0645 0.4870 -4.7199 42 1 10.4245 -1.0600 -4.1134 43 1 13.5628 1.7556 -3.9901 44 1 9.1694 -1.1091 -1.9241 45 1 8.9873 0.3889 -0.9804 46 1 4.7598 -0.2064 -4.3282 47 1 3.8598 0.9787 -3.3515 48 1 5.5174 1.3430 -3.8879 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519189030.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:11 Heat of formation + Delta-G solvation = 123.419533 kcal Electronic energy + Delta-G solvation = -26962.060819 eV Core-core repulsion = 23440.504384 eV Total energy + Delta-G solvation = -3521.556434 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.81928 -38.52263 -37.15678 -34.92856 -33.80823 -33.17859 -31.94763 -30.35586 -30.00778 -28.36046 -27.58412 -25.19330 -24.74268 -23.79547 -22.83279 -21.57416 -20.82586 -19.86455 -18.70545 -18.30879 -17.27415 -16.51722 -16.27588 -15.68371 -15.35591 -14.68543 -14.51729 -14.41008 -14.24260 -14.04871 -13.95239 -13.30205 -13.22665 -12.91606 -12.87821 -12.59613 -12.55759 -12.23604 -11.88660 -11.73104 -11.52965 -11.22617 -11.06964 -10.95756 -10.85604 -10.72319 -10.50965 -10.33670 -10.26644 -10.20624 -10.01958 -9.93153 -9.68215 -9.40412 -9.22665 -8.78053 -8.33932 -7.78267 -6.01564 -4.06982 1.93534 2.33043 2.60442 2.61617 3.10898 3.31652 3.38339 3.43147 3.94928 4.06376 4.31377 4.45584 4.48674 4.57895 4.76206 4.86788 4.95625 5.12106 5.15763 5.26076 5.27737 5.29820 5.37225 5.42075 5.47402 5.60518 5.68756 5.72772 5.74575 5.78080 5.88078 5.95455 5.99505 6.12977 6.16334 6.31028 6.39498 6.45317 6.59789 6.78180 6.86726 6.99705 7.22480 7.34484 7.36199 7.64068 7.71902 7.96729 8.07810 8.40227 8.96297 9.06210 9.57737 11.04933 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.024974 B = 0.002885 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.884571 B = 9702.149481 C =10121.837764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.177 4.177 3 C -0.005 4.005 4 C 0.017 3.983 5 H 0.085 0.915 6 C -0.113 4.113 7 C -0.150 4.150 8 C 0.161 3.839 9 N -0.275 5.275 10 N -0.324 5.324 11 C 0.379 3.621 12 N -0.452 5.452 13 C 0.060 3.940 14 C -0.116 4.116 15 C -0.115 4.115 16 C 0.054 3.946 17 H 0.036 0.964 18 C -0.512 4.512 19 H 0.058 0.942 20 C 0.064 3.936 21 N -0.890 5.890 22 Si 0.892 3.108 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.273 1.273 26 C 0.084 3.916 27 N -0.488 5.488 28 C 0.075 3.925 29 H 0.216 0.784 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.040 0.960 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.097 0.903 42 H 0.035 0.965 43 H 0.260 0.740 44 H 0.041 0.959 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.086 0.914 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.698 -3.072 -2.080 23.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.177 4.177 3 C -0.042 4.042 4 C -0.004 4.004 5 H 0.104 0.896 6 C -0.151 4.151 7 C -0.207 4.207 8 C -0.107 4.107 9 N -0.114 5.114 10 N -0.169 5.169 11 C 0.023 3.977 12 N -0.175 5.175 13 C -0.067 4.067 14 C -0.154 4.154 15 C -0.153 4.153 16 C 0.035 3.965 17 H 0.054 0.946 18 C -0.551 4.551 19 H 0.076 0.924 20 C -0.138 4.138 21 N -0.529 5.529 22 Si 0.720 3.280 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.198 1.198 26 C -0.041 4.041 27 N -0.184 5.184 28 C -0.068 4.068 29 H 0.233 0.767 30 H 0.120 0.880 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.115 0.885 42 H 0.054 0.946 43 H 0.070 0.930 44 H 0.059 0.941 45 H 0.095 0.905 46 H 0.094 0.906 47 H 0.105 0.895 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -21.983 -3.072 -1.022 22.220 hybrid contribution 0.273 -0.191 -0.836 0.900 sum -21.710 -3.262 -1.858 22.032 Atomic orbital electron populations 1.24859 0.95859 1.01453 1.00804 1.22955 0.94216 1.00058 1.00468 1.18721 0.84581 1.01862 0.99073 1.19457 0.84406 0.97736 0.98822 0.89639 1.21592 1.01452 0.92649 0.99454 1.21750 1.01572 1.00295 0.97113 1.24239 0.96275 1.02546 0.87664 1.73890 0.95384 1.18893 1.23233 1.74744 1.13608 1.17956 1.10586 1.23102 0.83563 0.96864 0.94198 1.58852 1.01052 1.54338 1.03254 1.22314 1.00067 0.97151 0.87185 1.21718 0.95926 1.00684 0.97106 1.21734 0.94903 0.99434 0.99221 1.18750 0.90229 0.96304 0.91199 0.94574 1.21084 0.90722 1.33710 1.09590 0.92409 1.24913 0.99004 0.94843 0.95010 1.69869 1.26115 1.36200 1.20701 0.86581 0.83213 0.77878 0.80285 1.20728 1.21263 1.19792 1.22414 0.84571 0.99532 0.97580 1.45999 1.06002 1.47511 1.18885 1.22086 1.00998 0.99323 0.84391 0.76695 0.88025 0.89318 0.90304 0.90901 0.92378 0.93030 0.92926 0.94176 0.91878 0.91685 0.92524 0.88520 0.94646 0.93003 0.94097 0.90534 0.90559 0.89532 0.88487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.67 19.25 29.55 0.57 -1.10 16 2 C -0.18 -1.63 12.27 -37.13 -0.46 -2.08 16 3 C 0.00 -0.05 5.16 -29.53 -0.15 -0.20 16 4 C 0.02 0.17 2.20 -91.77 -0.20 -0.04 16 5 H 0.09 0.70 6.94 -51.93 -0.36 0.34 16 6 C -0.11 -1.06 5.29 -26.72 -0.14 -1.20 16 7 C -0.15 -1.39 9.63 37.16 0.36 -1.03 16 8 C 0.16 2.20 5.65 -154.02 -0.87 1.33 16 9 N -0.28 -4.83 12.18 32.99 0.40 -4.42 16 10 N -0.32 -6.49 11.24 30.32 0.34 -6.15 16 11 C 0.38 6.80 7.21 -318.87 -2.30 4.50 16 12 N -0.45 -8.45 4.70 -174.54 -0.82 -9.27 16 13 C 0.06 0.97 5.28 -3.83 -0.02 0.95 16 14 C -0.12 -2.04 6.10 -26.64 -0.16 -2.21 16 15 C -0.11 -2.57 5.02 -26.61 -0.13 -2.70 16 16 C 0.05 1.32 2.27 -91.69 -0.21 1.11 16 17 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 18 C -0.51 -13.89 8.56 -34.44 -0.29 -14.19 16 19 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 20 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 21 N -0.89 -24.75 11.35 55.43 0.63 -24.12 16 22 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 26 C 0.08 1.85 4.10 -3.83 -0.02 1.83 16 27 N -0.49 -6.77 3.21 -121.46 -0.39 -7.16 16 28 C 0.08 0.70 9.15 59.85 0.55 1.25 16 29 H 0.22 0.96 7.80 -54.10 -0.42 0.54 16 30 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.59 7.26 -51.93 -0.38 0.22 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.05 0.61 7.56 -51.93 -0.39 0.22 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.82 5.23 -51.93 -0.27 0.55 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.10 2.42 6.15 -51.93 -0.32 2.10 16 42 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.08 1.78 7.92 -51.93 -0.41 1.37 16 46 H 0.08 0.58 7.75 -51.93 -0.40 0.18 16 47 H 0.09 0.58 7.24 -51.93 -0.38 0.21 16 48 H 0.10 0.93 7.66 -51.93 -0.40 0.54 16 LS Contribution 383.11 15.07 5.77 5.77 Total: -1.00 -31.00 383.11 -10.58 -41.59 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -7.92 Total: -0.28 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -3.58 Total: -12.13 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: 0.16 Total: -51.13 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.00 -10.58 -41.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519189030.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.007 kcal (2) G-P(sol) polarization free energy of solvation -31.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds