Wall clock time and date at job start Tue Mar 31 2020 11:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47586 * 58.98647 * 3 2 1 5 5 H 1.09004 * 109.47323 * 54.21924 * 4 3 2 6 6 C 1.53006 * 109.47251 * 294.22484 * 4 3 2 7 7 C 1.53007 * 109.46973 * 175.13335 * 6 4 3 8 8 C 1.50697 * 109.47600 * 174.22203 * 4 3 2 9 9 N 1.30299 * 126.34480 * 59.97287 * 8 4 3 10 10 N 1.28530 * 110.05222 * 180.02562 * 9 8 4 11 11 C 1.31217 * 109.86131 * 0.02562 * 10 9 8 12 12 N 1.38582 * 126.47686 * 179.97438 * 11 10 9 13 13 C 1.46847 * 110.99871 * 124.23330 * 12 11 10 14 14 C 1.53048 * 109.57412 * 174.19791 * 13 12 11 15 15 C 1.53123 * 109.27471 * 59.08195 * 14 13 12 16 16 C 1.53120 * 109.21572 * 302.44490 * 15 14 13 17 17 H 1.09002 * 109.49854 * 297.64277 * 16 15 14 18 18 C 1.50697 * 109.50164 * 177.56454 * 16 15 14 19 19 H 1.08000 * 119.99550 * 239.99740 * 18 16 15 20 20 C 1.37882 * 120.00228 * 59.99714 * 18 16 15 21 21 N 1.31505 * 119.99857 * 0.02562 * 20 18 16 22 22 Si 1.86797 * 119.99929 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46953 * 90.00296 * 22 20 18 24 24 H 1.48501 * 109.47364 * 210.00125 * 22 20 18 25 25 H 1.48508 * 109.47309 * 330.00439 * 22 20 18 26 26 C 1.46849 * 110.99465 * 0.02622 * 12 11 10 27 27 N 1.36457 * 107.05263 * 0.22580 * 11 10 9 28 28 C 1.46502 * 127.13414 * 179.77454 * 27 11 10 29 29 H 4.44642 * 5.63405 * 180.02562 * 4 1 2 30 30 H 1.09003 * 109.47345 * 298.98687 * 3 2 1 31 31 H 1.09000 * 109.47385 * 178.99175 * 3 2 1 32 32 H 1.08998 * 109.46858 * 295.12945 * 6 4 3 33 33 H 1.08998 * 109.46885 * 55.13001 * 6 4 3 34 34 H 1.09000 * 109.46561 * 185.50234 * 7 6 4 35 35 H 1.08993 * 109.46836 * 305.50054 * 7 6 4 36 36 H 1.08992 * 109.47005 * 65.50330 * 7 6 4 37 37 H 1.08996 * 109.46088 * 294.17755 * 13 12 11 38 38 H 1.08996 * 109.46401 * 54.16008 * 13 12 11 39 39 H 1.08998 * 109.44978 * 299.17692 * 14 13 12 40 40 H 1.08998 * 109.55879 * 179.05750 * 14 13 12 41 41 H 1.09003 * 109.51981 * 182.50405 * 15 14 13 42 42 H 1.09006 * 109.52108 * 62.37902 * 15 14 13 43 43 H 0.96998 * 120.00250 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.46486 * 65.82347 * 26 12 11 45 45 H 1.08996 * 109.46115 * 305.84824 * 26 12 11 46 46 H 1.09005 * 109.46849 * 90.02406 * 28 27 11 47 47 H 1.09000 * 109.47120 * 210.02044 * 28 27 11 48 48 H 1.08994 * 109.47121 * 330.02296 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1564 -0.7423 -1.2362 5 1 2.7109 -0.3077 -2.1311 6 6 2.7691 -2.2194 -1.1397 7 6 3.1720 -2.9376 -2.4292 8 6 4.6565 -0.6203 -1.3120 9 7 5.5108 -1.0313 -0.4181 10 7 6.7095 -0.7682 -0.8003 11 6 6.6839 -0.1699 -1.9679 12 7 7.7806 0.2651 -2.6949 13 6 7.7836 -0.3183 -4.0425 14 6 8.9221 0.2924 -4.8630 15 6 10.2551 0.0157 -4.1622 16 6 10.2079 0.5911 -2.7441 17 1 10.0792 1.6723 -2.7942 18 6 11.4944 0.2702 -2.0279 19 1 11.4756 -0.3150 -1.1204 20 6 12.6953 0.7238 -2.5311 21 7 12.7179 1.4368 -3.6358 22 14 14.2898 0.3266 -1.6429 23 1 14.8398 -0.9519 -2.1609 24 1 15.2706 1.4173 -1.8746 25 1 14.0268 0.1984 -0.1869 26 6 9.0323 -0.0295 -1.9858 27 7 5.3731 -0.0519 -2.3284 28 6 4.8437 0.5547 -3.5523 29 1 -1.0498 0.0000 -0.0004 30 1 3.0096 -0.4972 0.8989 31 1 3.0089 1.0283 -0.0181 32 1 3.2836 -2.6753 -0.2938 33 1 1.6916 -2.3039 -0.9981 34 1 2.8097 -3.9652 -2.4010 35 1 2.7353 -2.4216 -3.2841 36 1 4.2581 -2.9377 -2.5208 37 1 7.9265 -1.3965 -3.9710 38 1 6.8317 -0.1097 -4.5307 39 1 8.7718 1.3686 -4.9474 40 1 8.9345 -0.1530 -5.8578 41 1 11.0645 0.4870 -4.7199 42 1 10.4245 -1.0600 -4.1134 43 1 13.5628 1.7556 -3.9901 44 1 9.1694 -1.1091 -1.9241 45 1 8.9873 0.3889 -0.9804 46 1 4.7598 -0.2064 -4.3282 47 1 3.8598 0.9787 -3.3515 48 1 5.5174 1.3430 -3.8879 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001519189030.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:10 Heat of formation + Delta-G solvation = 108.149815 kcal Electronic energy + Delta-G solvation = -26962.722963 eV Core-core repulsion = 23440.504384 eV Total energy + Delta-G solvation = -3522.218579 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.05245 -40.05539 -38.02237 -36.19969 -35.42712 -33.98652 -33.54585 -31.83899 -31.18385 -29.52793 -28.51623 -27.07609 -25.66947 -25.35082 -23.89525 -23.06857 -22.17108 -20.98506 -20.32706 -18.95326 -18.78306 -17.94177 -17.49047 -17.07979 -16.56966 -16.38644 -15.70851 -15.57264 -15.27822 -15.14894 -14.74693 -14.68438 -14.50845 -14.29130 -14.12103 -14.00264 -13.75546 -13.42210 -13.01161 -12.86874 -12.72974 -12.61561 -12.52632 -12.45832 -12.20524 -11.93708 -11.88534 -11.83545 -11.62267 -11.30281 -11.25259 -11.15436 -11.06760 -10.96580 -10.82442 -10.61087 -10.39434 -9.20121 -8.11239 -6.23954 0.76341 1.23287 1.40830 1.42122 1.52575 1.78614 1.98019 1.98632 2.41821 2.72547 3.16433 3.17104 3.52455 3.69849 3.75197 3.89484 4.00256 4.04937 4.09340 4.10357 4.30515 4.35765 4.38912 4.44673 4.48388 4.53284 4.62102 4.64516 4.67837 4.75208 4.84571 4.93138 4.95180 4.98270 5.02425 5.04945 5.09196 5.20757 5.24266 5.27472 5.34622 5.44204 5.61324 5.65981 5.73000 5.97352 6.11097 6.26605 6.36437 6.75726 6.84434 7.43387 7.79373 8.93744 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.024974 B = 0.002885 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.884571 B = 9702.149481 C =10121.837764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.213 4.213 3 C 0.001 3.999 4 C 0.021 3.979 5 H 0.115 0.885 6 C -0.109 4.109 7 C -0.147 4.147 8 C 0.188 3.812 9 N -0.316 5.316 10 N -0.370 5.370 11 C 0.361 3.639 12 N -0.453 5.453 13 C 0.062 3.938 14 C -0.106 4.106 15 C -0.108 4.108 16 C 0.056 3.944 17 H 0.006 0.994 18 C -0.538 4.538 19 H 0.046 0.954 20 C 0.021 3.979 21 N -0.910 5.910 22 Si 0.952 3.048 23 H -0.274 1.274 24 H -0.279 1.279 25 H -0.274 1.274 26 C 0.107 3.893 27 N -0.479 5.479 28 C 0.060 3.940 29 H 0.247 0.753 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.023 0.977 37 H 0.033 0.967 38 H 0.107 0.893 39 H 0.065 0.935 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.024 0.976 43 H 0.263 0.737 44 H 0.024 0.976 45 H 0.052 0.948 46 H 0.102 0.898 47 H 0.120 0.880 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.945 -3.136 -3.708 26.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.214 4.214 3 C -0.037 4.037 4 C 0.000 4.000 5 H 0.133 0.867 6 C -0.147 4.147 7 C -0.204 4.204 8 C -0.081 4.081 9 N -0.154 5.154 10 N -0.215 5.215 11 C 0.003 3.997 12 N -0.176 5.176 13 C -0.064 4.064 14 C -0.144 4.144 15 C -0.146 4.146 16 C 0.037 3.963 17 H 0.024 0.976 18 C -0.577 4.577 19 H 0.064 0.936 20 C -0.178 4.178 21 N -0.549 5.549 22 Si 0.777 3.223 23 H -0.200 1.200 24 H -0.205 1.205 25 H -0.199 1.199 26 C -0.019 4.019 27 N -0.174 5.174 28 C -0.081 4.081 29 H 0.263 0.737 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.111 0.889 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.042 0.958 37 H 0.051 0.949 38 H 0.125 0.875 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.087 0.913 42 H 0.043 0.957 43 H 0.072 0.928 44 H 0.043 0.957 45 H 0.071 0.929 46 H 0.120 0.880 47 H 0.138 0.862 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -25.257 -3.132 -2.667 25.590 hybrid contribution 1.123 -0.166 -0.305 1.175 sum -24.135 -3.298 -2.972 24.540 Atomic orbital electron populations 1.25641 0.96586 0.99514 0.98797 1.22918 0.94306 1.01836 1.02299 1.18534 0.85515 1.01352 0.98295 1.19698 0.81471 0.98510 1.00310 0.86692 1.21556 1.02318 0.91947 0.98867 1.21732 0.99680 1.01251 0.97724 1.24991 0.97509 0.99390 0.86198 1.73806 0.95267 1.21173 1.25165 1.74618 1.15443 1.19393 1.12037 1.22905 0.84770 0.97885 0.94136 1.58770 0.99958 1.54968 1.03916 1.22405 1.01608 0.96421 0.85933 1.21610 0.93346 1.01162 0.98252 1.21526 0.97139 0.98077 0.97903 1.18629 0.90304 0.94559 0.92802 0.97592 1.21394 0.92539 1.34061 1.09698 0.93616 1.25604 1.01821 0.94696 0.95720 1.69979 1.26874 1.36542 1.21482 0.85657 0.79608 0.77992 0.79015 1.19973 1.20478 1.19903 1.21869 0.85854 0.97756 0.96464 1.46210 1.04291 1.46803 1.20103 1.22562 1.02431 1.00080 0.83032 0.73693 0.89492 0.89714 0.92401 0.88940 0.91529 0.90877 0.95821 0.94904 0.87546 0.91633 0.89277 0.91266 0.95671 0.92812 0.95747 0.92911 0.88002 0.86207 0.88530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.27 19.25 74.32 1.43 -0.84 16 2 C -0.21 -3.38 12.27 31.12 0.38 -3.00 16 3 C 0.00 0.01 5.16 28.78 0.15 0.16 16 4 C 0.02 0.36 2.20 -11.54 -0.03 0.34 16 5 H 0.12 1.37 6.94 -2.38 -0.02 1.35 16 6 C -0.11 -1.81 5.29 30.60 0.16 -1.65 16 7 C -0.15 -2.35 9.63 71.98 0.69 -1.66 16 8 C 0.19 4.99 5.65 137.64 0.78 5.76 16 9 N -0.32 -11.40 12.18 -49.54 -0.60 -12.00 16 10 N -0.37 -15.45 11.24 -58.00 -0.65 -16.10 16 11 C 0.36 13.05 7.21 260.11 1.88 14.93 16 12 N -0.45 -17.14 4.70 -706.14 -3.32 -20.46 16 13 C 0.06 1.94 5.28 86.33 0.46 2.40 16 14 C -0.11 -3.60 6.10 30.65 0.19 -3.41 16 15 C -0.11 -4.97 5.02 30.68 0.15 -4.82 16 16 C 0.06 2.87 2.27 -11.49 -0.03 2.85 16 17 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 18 C -0.54 -30.59 8.56 25.60 0.22 -30.37 16 19 H 0.05 2.63 7.74 -2.91 -0.02 2.61 16 20 C 0.02 1.17 5.30 84.66 0.45 1.62 16 21 N -0.91 -51.84 11.35 21.45 0.24 -51.60 16 22 Si 0.95 44.39 29.54 68.60 2.03 46.42 16 23 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 24 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 25 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 26 C 0.11 4.97 4.10 86.33 0.35 5.33 16 27 N -0.48 -12.50 3.21 -538.17 -1.73 -14.23 16 28 C 0.06 0.87 9.15 127.77 1.17 2.04 16 29 H 0.25 1.07 7.80 -4.43 -0.03 1.03 16 30 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.09 1.22 7.26 -2.39 -0.02 1.21 16 34 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.02 0.51 7.56 -2.39 -0.02 0.49 16 37 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.11 2.41 5.23 -2.39 -0.01 2.40 16 39 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.07 3.56 6.15 -2.39 -0.01 3.55 16 42 H 0.02 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 44 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.05 2.64 7.92 -2.39 -0.02 2.62 16 46 H 0.10 1.04 7.75 -2.38 -0.02 1.02 16 47 H 0.12 1.00 7.24 -2.39 -0.02 0.98 16 48 H 0.10 1.51 7.66 -2.39 -0.02 1.49 16 Total: -1.00 -72.48 383.11 5.30 -67.17 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 0.93 Total: 11.10 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: 8.41 Total: -10.31 kcal Atomic # 7 Polarization: -108.33 SS G_CDS: -6.06 Total: -114.39 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -72.48 5.30 -67.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519189030.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.324 kcal (2) G-P(sol) polarization free energy of solvation -72.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds