Wall clock time and date at job start Tue Mar 31 2020 11:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52997 * 109.46811 * 87.38725 * 3 2 1 5 5 H 1.08998 * 109.47593 * 305.00205 * 4 3 2 6 6 C 1.52998 * 109.47260 * 65.00290 * 4 3 2 7 7 C 1.53000 * 109.47451 * 184.99690 * 6 4 3 8 8 C 1.50700 * 109.46689 * 184.99842 * 4 3 2 9 9 N 1.30294 * 126.35229 * 299.96010 * 8 4 3 10 10 N 1.28526 * 110.05668 * 179.76461 * 9 8 4 11 11 C 1.31216 * 109.85963 * 0.45471 * 10 9 8 12 12 N 1.38580 * 126.47335 * 179.82275 * 11 10 9 13 13 C 1.46839 * 111.00232 * 271.96212 * 12 11 10 14 14 C 1.53031 * 109.52538 * 185.84306 * 13 12 11 15 15 C 1.53126 * 109.27695 * 300.81420 * 14 13 12 16 16 C 1.53123 * 109.15609 * 57.65575 * 15 14 13 17 17 H 1.08999 * 109.50274 * 62.28789 * 16 15 14 18 18 C 1.50703 * 109.50530 * 182.40628 * 16 15 14 19 19 H 1.07989 * 120.00342 * 119.80365 * 18 16 15 20 20 C 1.37877 * 119.99359 * 299.80563 * 18 16 15 21 21 N 1.31510 * 120.00536 * 359.97438 * 20 18 16 22 22 Si 1.86812 * 119.99610 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46945 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.46890 * 119.99851 * 22 20 18 25 25 H 1.48502 * 109.46933 * 239.99908 * 22 20 18 26 26 C 1.46848 * 110.99728 * 36.17509 * 12 11 10 27 27 N 1.36455 * 107.05300 * 359.55616 * 11 10 9 28 28 C 1.46498 * 127.13561 * 180.24102 * 27 11 10 29 29 H 4.44641 * 5.63377 * 180.02562 * 4 1 2 30 30 H 1.08999 * 109.47101 * 327.38805 * 3 2 1 31 31 H 1.08996 * 109.46716 * 207.39004 * 3 2 1 32 32 H 1.09003 * 109.46861 * 304.99563 * 6 4 3 33 33 H 1.09006 * 109.47484 * 64.99320 * 6 4 3 34 34 H 1.08999 * 109.46899 * 300.00281 * 7 6 4 35 35 H 1.09004 * 109.46877 * 59.99887 * 7 6 4 36 36 H 1.08995 * 109.46988 * 179.97438 * 7 6 4 37 37 H 1.09008 * 109.46052 * 305.85135 * 13 12 11 38 38 H 1.08994 * 109.46546 * 65.81858 * 13 12 11 39 39 H 1.08993 * 109.51108 * 60.75642 * 14 13 12 40 40 H 1.09003 * 109.50370 * 180.88084 * 14 13 12 41 41 H 1.09000 * 109.52271 * 297.75758 * 15 14 13 42 42 H 1.08997 * 109.52683 * 177.55536 * 15 14 13 43 43 H 0.97008 * 120.00275 * 179.97438 * 21 20 18 44 44 H 1.08999 * 109.46788 * 54.14343 * 26 12 11 45 45 H 1.08999 * 109.45027 * 294.16512 * 26 12 11 46 46 H 1.09006 * 109.47017 * 96.13292 * 28 27 11 47 47 H 1.08999 * 109.47313 * 216.12821 * 28 27 11 48 48 H 1.09000 * 109.47515 * 336.13394 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1560 -0.0649 -1.4410 5 1 2.7217 -0.9305 -1.9412 6 6 2.7507 1.2098 -2.1839 7 6 3.1508 1.0913 -3.6559 8 6 4.6579 -0.1879 -1.4371 9 7 5.5013 0.6636 -0.9261 10 7 6.7053 0.2462 -1.0935 11 6 6.6950 -0.8989 -1.7341 12 7 7.8017 -1.6498 -2.0972 13 6 8.3114 -1.2349 -3.4103 14 6 9.4373 -2.1768 -3.8428 15 6 10.5599 -2.1340 -2.8022 16 6 9.9922 -2.5234 -1.4344 17 1 9.6153 -3.5454 -1.4744 18 6 11.0774 -2.4268 -0.3932 19 1 10.9643 -1.7538 0.4438 20 6 12.2146 -3.1976 -0.5094 21 7 12.3521 -4.0175 -1.5284 22 14 13.5602 -3.0774 0.7809 23 1 13.1657 -2.0892 1.8169 24 1 13.7593 -4.4060 1.4137 25 1 14.8254 -2.6409 0.1375 26 6 8.8500 -1.5715 -1.0718 27 7 5.3884 -1.2137 -1.9701 28 6 4.8747 -2.4036 -2.6532 29 1 -1.0500 0.0002 0.0000 30 1 3.0097 -0.8648 0.5539 31 1 3.0089 0.9133 0.4728 32 1 1.6716 1.3455 -2.1105 33 1 3.2558 2.0666 -1.7379 34 1 4.2298 0.9555 -3.7293 35 1 2.6456 0.2346 -4.1019 36 1 2.8616 1.9992 -4.1852 37 1 7.5043 -1.2739 -4.1420 38 1 8.6943 -0.2165 -3.3461 39 1 9.0518 -3.1933 -3.9206 40 1 9.8259 -1.8592 -4.8104 41 1 10.9718 -1.1261 -2.7520 42 1 11.3447 -2.8359 -3.0840 43 1 13.1525 -4.5595 -1.6103 44 1 8.4342 -1.8549 -0.1049 45 1 9.2304 -0.5515 -1.0187 46 1 4.6025 -3.1575 -1.9145 47 1 3.9957 -2.1351 -3.2391 48 1 5.6437 -2.8035 -3.3141 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519189031.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:13 Heat of formation + Delta-G solvation = 121.179707 kcal Electronic energy + Delta-G solvation = -26909.492711 eV Core-core repulsion = 23387.839150 eV Total energy + Delta-G solvation = -3521.653560 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.83786 -38.43100 -37.16638 -34.83065 -33.82158 -33.19247 -31.87946 -30.36410 -29.99439 -28.37410 -27.47319 -25.08307 -24.80721 -23.80880 -22.81259 -21.61769 -20.73651 -20.02380 -18.58048 -18.29853 -17.25826 -16.51664 -16.28485 -15.65075 -15.39405 -14.72250 -14.48740 -14.42499 -14.05781 -13.96536 -13.78951 -13.32732 -13.27111 -12.88958 -12.83369 -12.56817 -12.49377 -12.28907 -11.87619 -11.74361 -11.54939 -11.29110 -11.09222 -10.97540 -10.82603 -10.70941 -10.50149 -10.36149 -10.27364 -10.21784 -9.99277 -9.93103 -9.58036 -9.25162 -9.06960 -8.72110 -8.35986 -8.03110 -6.01395 -4.06864 1.86424 2.33722 2.60431 2.60758 3.04831 3.30112 3.38345 3.43528 3.93893 4.11123 4.29584 4.45938 4.47321 4.66233 4.73905 4.86057 5.06284 5.11548 5.25453 5.27873 5.31502 5.35083 5.37286 5.47505 5.56431 5.66322 5.69095 5.73093 5.76969 5.84032 5.87846 5.96044 5.99384 6.11600 6.21341 6.37054 6.39257 6.52968 6.65723 6.76307 6.86692 7.03986 7.27765 7.36238 7.37829 7.70450 7.73675 7.98513 8.09284 8.41317 8.96137 8.97798 9.57902 11.05011 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.022390 B = 0.002949 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.274413 B = 9492.047318 C =10089.913072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.177 4.177 3 C -0.004 4.004 4 C 0.015 3.985 5 H 0.087 0.913 6 C -0.114 4.114 7 C -0.151 4.151 8 C 0.167 3.833 9 N -0.280 5.280 10 N -0.315 5.315 11 C 0.368 3.632 12 N -0.466 5.466 13 C 0.073 3.927 14 C -0.116 4.116 15 C -0.114 4.114 16 C 0.056 3.944 17 H 0.035 0.965 18 C -0.512 4.512 19 H 0.057 0.943 20 C 0.064 3.936 21 N -0.889 5.889 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.084 3.916 27 N -0.473 5.473 28 C 0.079 3.921 29 H 0.216 0.784 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.042 0.958 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.035 0.965 42 H 0.095 0.905 43 H 0.259 0.741 44 H 0.062 0.938 45 H 0.044 0.956 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.344 4.612 -5.304 22.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.177 4.177 3 C -0.042 4.042 4 C -0.006 4.006 5 H 0.105 0.895 6 C -0.152 4.152 7 C -0.208 4.208 8 C -0.100 4.100 9 N -0.121 5.121 10 N -0.159 5.159 11 C 0.012 3.988 12 N -0.192 5.192 13 C -0.054 4.054 14 C -0.154 4.154 15 C -0.152 4.152 16 C 0.037 3.963 17 H 0.053 0.947 18 C -0.551 4.551 19 H 0.075 0.925 20 C -0.138 4.138 21 N -0.528 5.528 22 Si 0.719 3.281 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.210 1.210 26 C -0.042 4.042 27 N -0.166 5.166 28 C -0.064 4.064 29 H 0.233 0.767 30 H 0.107 0.893 31 H 0.120 0.880 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.054 0.946 42 H 0.113 0.887 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.063 0.937 46 H 0.099 0.901 47 H 0.100 0.900 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.787 5.187 -4.727 21.940 hybrid contribution 0.343 -0.575 0.034 0.670 sum -20.444 4.612 -4.693 21.477 Atomic orbital electron populations 1.24861 0.95859 1.01662 1.00509 1.22931 0.94192 1.00049 1.00542 1.18706 0.84644 1.04799 0.96032 1.19482 0.84222 1.00533 0.96365 0.89486 1.21599 1.01484 0.96732 0.95394 1.21761 1.01473 1.01641 0.95925 1.24343 0.96253 0.87848 1.01576 1.73924 0.95550 1.23466 1.19131 1.74726 1.13647 1.08106 1.19432 1.22809 0.84933 0.91619 0.99404 1.58960 1.05360 1.49189 1.05720 1.22131 0.97409 0.98442 0.87461 1.21711 0.95970 0.98601 0.99084 1.21710 0.97288 1.00980 0.95196 1.18727 0.90349 0.94113 0.93129 0.94695 1.21128 1.02246 1.23455 1.08270 0.92487 1.24914 0.98171 0.95047 0.95627 1.69888 1.27936 1.25600 1.29403 0.86544 0.81859 0.77860 0.81812 1.19710 1.21058 1.21038 1.22395 0.89952 1.00809 0.91035 1.46171 1.06366 1.19408 1.44673 1.22003 1.00988 0.85364 0.98035 0.76677 0.89270 0.88024 0.90803 0.90307 0.92969 0.92961 0.92316 0.92536 0.93988 0.91854 0.92649 0.94574 0.88675 0.93065 0.91903 0.93728 0.90146 0.90047 0.88383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.67 19.25 29.55 0.57 -1.10 16 2 C -0.18 -1.64 12.23 -37.12 -0.45 -2.09 16 3 C 0.00 -0.04 5.17 -29.52 -0.15 -0.20 16 4 C 0.02 0.15 2.22 -91.77 -0.20 -0.06 16 5 H 0.09 0.71 7.10 -51.93 -0.37 0.35 16 6 C -0.11 -1.04 5.28 -26.73 -0.14 -1.18 16 7 C -0.15 -1.35 9.73 37.16 0.36 -0.98 16 8 C 0.17 2.28 5.56 -154.01 -0.86 1.43 16 9 N -0.28 -4.86 12.18 32.99 0.40 -4.45 16 10 N -0.32 -6.22 11.69 30.31 0.35 -5.86 16 11 C 0.37 6.58 6.71 -318.87 -2.14 4.44 16 12 N -0.47 -8.72 4.63 -174.56 -0.81 -9.53 16 13 C 0.07 1.25 5.39 -3.84 -0.02 1.23 16 14 C -0.12 -2.10 6.09 -26.65 -0.16 -2.26 16 15 C -0.11 -2.58 5.03 -26.60 -0.13 -2.71 16 16 C 0.06 1.36 2.26 -91.69 -0.21 1.15 16 17 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 18 C -0.51 -13.89 8.56 -34.44 -0.29 -14.18 16 19 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 21 N -0.89 -24.76 11.36 55.43 0.63 -24.13 16 22 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C 0.08 1.83 4.31 -3.83 -0.02 1.81 16 27 N -0.47 -6.65 3.21 -121.46 -0.39 -7.04 16 28 C 0.08 0.77 10.80 59.85 0.65 1.42 16 29 H 0.22 0.97 7.80 -54.09 -0.42 0.55 16 30 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.59 7.23 -51.93 -0.38 0.21 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.05 0.59 7.38 -51.93 -0.38 0.20 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.84 8.10 -51.92 -0.42 0.42 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.09 2.41 6.16 -51.93 -0.32 2.09 16 43 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 44 H 0.06 1.43 8.10 -51.93 -0.42 1.01 16 45 H 0.04 1.03 8.06 -51.93 -0.42 0.61 16 46 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.08 0.56 7.51 -51.93 -0.39 0.17 16 48 H 0.10 0.99 8.09 -51.93 -0.42 0.57 16 LS Contribution 388.98 15.07 5.86 5.86 Total: -1.00 -30.83 388.98 -10.40 -41.23 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -8.13 Total: -0.60 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -3.30 Total: -11.63 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: 0.19 Total: -51.01 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.83 -10.40 -41.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519189031.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.409 kcal (2) G-P(sol) polarization free energy of solvation -30.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds