Wall clock time and date at job start Tue Mar 31 2020 11:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52997 * 109.46811 * 87.38725 * 3 2 1 5 5 H 1.08998 * 109.47593 * 305.00205 * 4 3 2 6 6 C 1.52998 * 109.47260 * 65.00290 * 4 3 2 7 7 C 1.53000 * 109.47451 * 184.99690 * 6 4 3 8 8 C 1.50700 * 109.46689 * 184.99842 * 4 3 2 9 9 N 1.30294 * 126.35229 * 299.96010 * 8 4 3 10 10 N 1.28526 * 110.05668 * 179.76461 * 9 8 4 11 11 C 1.31216 * 109.85963 * 0.45471 * 10 9 8 12 12 N 1.38580 * 126.47335 * 179.82275 * 11 10 9 13 13 C 1.46839 * 111.00232 * 271.96212 * 12 11 10 14 14 C 1.53031 * 109.52538 * 185.84306 * 13 12 11 15 15 C 1.53126 * 109.27695 * 300.81420 * 14 13 12 16 16 C 1.53123 * 109.15609 * 57.65575 * 15 14 13 17 17 H 1.08999 * 109.50274 * 62.28789 * 16 15 14 18 18 C 1.50703 * 109.50530 * 182.40628 * 16 15 14 19 19 H 1.07989 * 120.00342 * 119.80365 * 18 16 15 20 20 C 1.37877 * 119.99359 * 299.80563 * 18 16 15 21 21 N 1.31510 * 120.00536 * 359.97438 * 20 18 16 22 22 Si 1.86812 * 119.99610 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46945 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.46890 * 119.99851 * 22 20 18 25 25 H 1.48502 * 109.46933 * 239.99908 * 22 20 18 26 26 C 1.46848 * 110.99728 * 36.17509 * 12 11 10 27 27 N 1.36455 * 107.05300 * 359.55616 * 11 10 9 28 28 C 1.46498 * 127.13561 * 180.24102 * 27 11 10 29 29 H 4.44641 * 5.63377 * 180.02562 * 4 1 2 30 30 H 1.08999 * 109.47101 * 327.38805 * 3 2 1 31 31 H 1.08996 * 109.46716 * 207.39004 * 3 2 1 32 32 H 1.09003 * 109.46861 * 304.99563 * 6 4 3 33 33 H 1.09006 * 109.47484 * 64.99320 * 6 4 3 34 34 H 1.08999 * 109.46899 * 300.00281 * 7 6 4 35 35 H 1.09004 * 109.46877 * 59.99887 * 7 6 4 36 36 H 1.08995 * 109.46988 * 179.97438 * 7 6 4 37 37 H 1.09008 * 109.46052 * 305.85135 * 13 12 11 38 38 H 1.08994 * 109.46546 * 65.81858 * 13 12 11 39 39 H 1.08993 * 109.51108 * 60.75642 * 14 13 12 40 40 H 1.09003 * 109.50370 * 180.88084 * 14 13 12 41 41 H 1.09000 * 109.52271 * 297.75758 * 15 14 13 42 42 H 1.08997 * 109.52683 * 177.55536 * 15 14 13 43 43 H 0.97008 * 120.00275 * 179.97438 * 21 20 18 44 44 H 1.08999 * 109.46788 * 54.14343 * 26 12 11 45 45 H 1.08999 * 109.45027 * 294.16512 * 26 12 11 46 46 H 1.09006 * 109.47017 * 96.13292 * 28 27 11 47 47 H 1.08999 * 109.47313 * 216.12821 * 28 27 11 48 48 H 1.09000 * 109.47515 * 336.13394 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1560 -0.0649 -1.4410 5 1 2.7217 -0.9305 -1.9412 6 6 2.7507 1.2098 -2.1839 7 6 3.1508 1.0913 -3.6559 8 6 4.6579 -0.1879 -1.4371 9 7 5.5013 0.6636 -0.9261 10 7 6.7053 0.2462 -1.0935 11 6 6.6950 -0.8989 -1.7341 12 7 7.8017 -1.6498 -2.0972 13 6 8.3114 -1.2349 -3.4103 14 6 9.4373 -2.1768 -3.8428 15 6 10.5599 -2.1340 -2.8022 16 6 9.9922 -2.5234 -1.4344 17 1 9.6153 -3.5454 -1.4744 18 6 11.0774 -2.4268 -0.3932 19 1 10.9643 -1.7538 0.4438 20 6 12.2146 -3.1976 -0.5094 21 7 12.3521 -4.0175 -1.5284 22 14 13.5602 -3.0774 0.7809 23 1 13.1657 -2.0892 1.8169 24 1 13.7593 -4.4060 1.4137 25 1 14.8254 -2.6409 0.1375 26 6 8.8500 -1.5715 -1.0718 27 7 5.3884 -1.2137 -1.9701 28 6 4.8747 -2.4036 -2.6532 29 1 -1.0500 0.0002 0.0000 30 1 3.0097 -0.8648 0.5539 31 1 3.0089 0.9133 0.4728 32 1 1.6716 1.3455 -2.1105 33 1 3.2558 2.0666 -1.7379 34 1 4.2298 0.9555 -3.7293 35 1 2.6456 0.2346 -4.1019 36 1 2.8616 1.9992 -4.1852 37 1 7.5043 -1.2739 -4.1420 38 1 8.6943 -0.2165 -3.3461 39 1 9.0518 -3.1933 -3.9206 40 1 9.8259 -1.8592 -4.8104 41 1 10.9718 -1.1261 -2.7520 42 1 11.3447 -2.8359 -3.0840 43 1 13.1525 -4.5595 -1.6103 44 1 8.4342 -1.8549 -0.1049 45 1 9.2304 -0.5515 -1.0187 46 1 4.6025 -3.1575 -1.9145 47 1 3.9957 -2.1351 -3.2391 48 1 5.6437 -2.8035 -3.3141 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001519189031.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:13 Heat of formation + Delta-G solvation = 106.314912 kcal Electronic energy + Delta-G solvation = -26910.137296 eV Core-core repulsion = 23387.839150 eV Total energy + Delta-G solvation = -3522.298146 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.07300 -39.99365 -38.03704 -36.05867 -35.50292 -33.99075 -33.50087 -31.83976 -31.20022 -29.54022 -28.42865 -27.03585 -25.67808 -25.38431 -23.77142 -23.27189 -22.10477 -21.12037 -20.20462 -18.96052 -18.78741 -17.92643 -17.52191 -17.10219 -16.53487 -16.39456 -15.74683 -15.44817 -15.25658 -15.07224 -14.71084 -14.63109 -14.50909 -14.34575 -14.06350 -14.04728 -13.69411 -13.45508 -13.04850 -12.88616 -12.73294 -12.61136 -12.59514 -12.45693 -12.22354 -11.94841 -11.88906 -11.83077 -11.60926 -11.38653 -11.19957 -11.10692 -11.06806 -10.96736 -10.78395 -10.41830 -10.29387 -9.51772 -8.10935 -6.23624 0.68031 1.22712 1.39640 1.42294 1.53577 1.72006 1.97243 1.97918 2.41899 2.75905 3.13872 3.16884 3.51392 3.73407 3.80152 3.90437 3.98957 4.08351 4.10082 4.17096 4.35107 4.37979 4.43060 4.45543 4.49143 4.56833 4.62548 4.65952 4.67779 4.78817 4.85116 4.91535 4.96290 4.99197 5.02244 5.05467 5.09771 5.20151 5.23752 5.27610 5.35319 5.44546 5.61671 5.65381 5.73521 5.98408 6.11339 6.29949 6.37329 6.75119 6.85146 7.43832 7.70603 8.94181 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.022390 B = 0.002949 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.274413 B = 9492.047318 C =10089.913072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.214 4.214 3 C 0.001 3.999 4 C 0.019 3.981 5 H 0.114 0.886 6 C -0.109 4.109 7 C -0.147 4.147 8 C 0.194 3.806 9 N -0.317 5.317 10 N -0.356 5.356 11 C 0.349 3.651 12 N -0.460 5.460 13 C 0.076 3.924 14 C -0.104 4.104 15 C -0.107 4.107 16 C 0.058 3.942 17 H 0.009 0.991 18 C -0.537 4.537 19 H 0.045 0.955 20 C 0.021 3.979 21 N -0.910 5.910 22 Si 0.951 3.049 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.278 1.278 26 C 0.105 3.895 27 N -0.466 5.466 28 C 0.068 3.932 29 H 0.247 0.753 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.025 0.975 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.029 0.971 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.023 0.977 42 H 0.068 0.932 43 H 0.262 0.738 44 H 0.046 0.954 45 H 0.025 0.975 46 H 0.093 0.907 47 H 0.118 0.882 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.205 4.198 -6.533 25.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.214 4.214 3 C -0.037 4.037 4 C -0.002 4.002 5 H 0.132 0.868 6 C -0.147 4.147 7 C -0.205 4.205 8 C -0.075 4.075 9 N -0.157 5.157 10 N -0.200 5.200 11 C -0.008 4.008 12 N -0.186 5.186 13 C -0.050 4.050 14 C -0.142 4.142 15 C -0.145 4.145 16 C 0.039 3.961 17 H 0.027 0.973 18 C -0.576 4.576 19 H 0.063 0.937 20 C -0.178 4.178 21 N -0.549 5.549 22 Si 0.777 3.223 23 H -0.198 1.198 24 H -0.203 1.203 25 H -0.203 1.203 26 C -0.022 4.022 27 N -0.158 5.158 28 C -0.073 4.073 29 H 0.263 0.737 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.044 0.956 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.109 0.891 38 H 0.047 0.953 39 H 0.085 0.915 40 H 0.102 0.898 41 H 0.042 0.958 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.043 0.957 46 H 0.111 0.889 47 H 0.137 0.863 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -23.670 4.763 -5.971 24.872 hybrid contribution 1.084 -0.437 0.430 1.245 sum -22.586 4.327 -5.541 23.655 Atomic orbital electron populations 1.25647 0.96588 0.99703 0.98520 1.22902 0.94294 1.01833 1.02374 1.18525 0.85585 1.03965 0.95603 1.19721 0.81310 1.02087 0.97075 0.86759 1.21562 1.02331 0.95475 0.95333 1.21745 0.99845 1.03054 0.95828 1.25079 0.97488 0.86339 0.98599 1.73845 0.95385 1.25126 1.21314 1.74608 1.15368 1.09512 1.20545 1.22634 0.85870 0.91732 1.00602 1.58872 1.04758 1.49628 1.05297 1.22155 0.98141 0.97264 0.87451 1.21592 0.94558 0.99290 0.98733 1.21514 0.98197 0.99165 0.95664 1.18602 0.90572 0.93138 0.93742 0.97284 1.21423 1.03646 1.23658 1.08865 0.93691 1.25600 1.00043 0.94718 0.97459 1.69992 1.28525 1.25890 1.30475 0.85615 0.79297 0.77921 0.79484 1.19805 1.20335 1.20330 1.21905 0.90141 0.98700 0.91435 1.46362 1.04838 1.20393 1.44238 1.22415 1.02234 0.84101 0.98549 0.73658 0.89837 0.89373 0.88919 0.92252 0.95593 0.90830 0.91555 0.89079 0.95278 0.91466 0.89835 0.95843 0.91314 0.92825 0.93581 0.95678 0.88872 0.86343 0.88456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.31 19.25 74.32 1.43 -0.88 16 2 C -0.21 -3.45 12.23 31.13 0.38 -3.07 16 3 C 0.00 0.01 5.17 28.79 0.15 0.16 16 4 C 0.02 0.33 2.22 -11.54 -0.03 0.31 16 5 H 0.11 1.42 7.10 -2.39 -0.02 1.40 16 6 C -0.11 -1.77 5.28 30.59 0.16 -1.60 16 7 C -0.15 -2.26 9.73 71.98 0.70 -1.56 16 8 C 0.19 5.12 5.56 137.64 0.76 5.88 16 9 N -0.32 -11.21 12.18 -49.54 -0.60 -11.82 16 10 N -0.36 -14.51 11.69 -58.00 -0.68 -15.19 16 11 C 0.35 12.55 6.71 260.11 1.74 14.29 16 12 N -0.46 -17.37 4.63 -706.18 -3.27 -20.64 16 13 C 0.08 2.57 5.39 86.33 0.47 3.04 16 14 C -0.10 -3.68 6.09 30.65 0.19 -3.49 16 15 C -0.11 -4.99 5.03 30.68 0.15 -4.84 16 16 C 0.06 2.97 2.26 -11.49 -0.03 2.95 16 17 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 18 C -0.54 -30.33 8.56 25.60 0.22 -30.11 16 19 H 0.04 2.57 7.74 -2.92 -0.02 2.55 16 20 C 0.02 1.18 5.30 84.66 0.45 1.63 16 21 N -0.91 -51.67 11.36 21.45 0.24 -51.43 16 22 Si 0.95 44.18 29.54 68.60 2.03 46.21 16 23 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 25 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 26 C 0.11 4.82 4.31 86.33 0.37 5.19 16 27 N -0.47 -12.48 3.21 -538.18 -1.73 -14.21 16 28 C 0.07 1.13 10.80 127.77 1.38 2.51 16 29 H 0.25 1.12 7.80 -4.42 -0.03 1.08 16 30 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.09 1.20 7.23 -2.39 -0.02 1.18 16 33 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.02 0.53 7.38 -2.39 -0.02 0.51 16 35 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.09 2.48 8.10 -2.38 -0.02 2.46 16 38 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.07 3.57 6.16 -2.39 -0.01 3.56 16 43 H 0.26 14.11 8.31 -92.70 -0.77 13.34 16 44 H 0.05 2.21 8.10 -2.39 -0.02 2.19 16 45 H 0.02 1.23 8.06 -2.39 -0.02 1.21 16 46 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 47 H 0.12 1.09 7.51 -2.39 -0.02 1.07 16 48 H 0.10 1.68 8.09 -2.39 -0.02 1.66 16 Total: -1.00 -70.51 388.98 5.42 -65.09 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.92 Total: 11.57 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: 8.51 Total: -9.59 kcal Atomic # 7 Polarization: -107.25 SS G_CDS: -6.03 Total: -113.28 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -70.51 5.42 -65.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519189031.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.404 kcal (2) G-P(sol) polarization free energy of solvation -70.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds