Wall clock time and date at job start Tue Mar 31 2020 11:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47168 * 10.26207 * 3 2 1 5 5 H 1.09002 * 109.47196 * 304.99750 * 4 3 2 6 6 C 1.53000 * 109.47341 * 64.99557 * 4 3 2 7 7 C 1.52994 * 109.47355 * 184.99895 * 6 4 3 8 8 C 1.50701 * 109.47011 * 185.00033 * 4 3 2 9 9 N 1.30291 * 126.34682 * 299.68595 * 8 4 3 10 10 N 1.28525 * 110.05701 * 179.82548 * 9 8 4 11 11 C 1.31224 * 109.85654 * 0.45231 * 10 9 8 12 12 N 1.38581 * 126.47096 * 179.73518 * 11 10 9 13 13 C 1.46849 * 110.99496 * 236.03930 * 12 11 10 14 14 C 1.53042 * 109.52027 * 174.15731 * 13 12 11 15 15 C 1.53117 * 109.27609 * 59.18633 * 14 13 12 16 16 C 1.53122 * 109.15932 * 302.34418 * 15 14 13 17 17 H 1.09002 * 109.50361 * 297.67203 * 16 15 14 18 18 C 1.50698 * 109.50446 * 177.59841 * 16 15 14 19 19 H 1.08003 * 120.00232 * 239.99845 * 18 16 15 20 20 C 1.37878 * 120.00463 * 59.99386 * 18 16 15 21 21 N 1.31514 * 119.99665 * 0.02562 * 20 18 16 22 22 Si 1.86799 * 120.00201 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47293 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47167 * 120.00254 * 22 20 18 25 25 H 1.48505 * 109.46956 * 240.00093 * 22 20 18 26 26 C 1.46839 * 110.99996 * 111.83515 * 12 11 10 27 27 N 1.36455 * 107.05385 * 359.73038 * 11 10 9 28 28 C 1.46493 * 127.13817 * 180.02562 * 27 11 10 29 29 H 4.44645 * 5.63342 * 179.97438 * 4 1 2 30 30 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 31 31 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 32 32 H 1.08999 * 109.47392 * 305.00621 * 6 4 3 33 33 H 1.09006 * 109.46749 * 65.00225 * 6 4 3 34 34 H 1.09001 * 109.47150 * 60.00009 * 7 6 4 35 35 H 1.09001 * 109.47620 * 180.02562 * 7 6 4 36 36 H 1.09009 * 109.47419 * 300.00609 * 7 6 4 37 37 H 1.08994 * 109.46632 * 294.17908 * 13 12 11 38 38 H 1.09001 * 109.46082 * 54.16218 * 13 12 11 39 39 H 1.09003 * 109.50242 * 179.12186 * 14 13 12 40 40 H 1.08998 * 109.50671 * 299.24497 * 14 13 12 41 41 H 1.08996 * 109.52434 * 62.24543 * 15 14 13 42 42 H 1.08993 * 109.52650 * 182.37649 * 15 14 13 43 43 H 0.96996 * 119.99978 * 179.97438 * 21 20 18 44 44 H 1.09001 * 109.46588 * 305.85006 * 26 12 11 45 45 H 1.08998 * 109.46630 * 65.82201 * 26 12 11 46 46 H 1.08997 * 109.47482 * 270.00500 * 28 27 11 47 47 H 1.09005 * 109.47199 * 30.00223 * 28 27 11 48 48 H 1.09003 * 109.47286 * 149.99676 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.4185 -0.2570 5 1 2.7223 -2.0991 0.4754 6 6 2.7520 -1.8590 -1.6652 7 6 3.1528 -3.3201 -1.8775 8 6 4.6585 -1.4416 -0.1354 9 7 5.5021 -0.7571 -0.8547 10 7 6.7060 -1.0125 -0.4843 11 6 6.6954 -1.8882 0.4929 12 7 7.8021 -2.4087 1.1447 13 6 7.8108 -3.8756 1.0772 14 6 9.1146 -4.4073 1.6768 15 6 9.2278 -3.9441 3.1319 16 6 9.1673 -2.4148 3.1785 17 1 10.0145 -2.0003 2.6321 18 6 9.2187 -1.9527 4.6120 19 1 8.4036 -1.3755 5.0229 20 6 10.3063 -2.2668 5.3991 21 7 11.2991 -2.9693 4.8987 22 14 10.3696 -1.6946 7.1762 23 1 9.1382 -0.9276 7.4934 24 1 10.4621 -2.8745 8.0731 25 1 11.5586 -0.8274 7.3749 26 6 7.8621 -1.9408 2.5353 27 7 5.3888 -2.1895 0.7461 28 6 4.8751 -3.1205 1.7538 29 1 -1.0498 -0.0004 0.0001 30 1 3.0090 0.6649 -0.7843 31 1 3.0092 0.3479 0.9672 32 1 1.6730 -1.7575 -1.7817 33 1 3.2573 -1.2331 -2.4009 34 1 2.6476 -3.9460 -1.1419 35 1 2.8650 -3.6339 -2.8809 36 1 4.2319 -3.4216 -1.7610 37 1 6.9648 -4.2701 1.6399 38 1 7.7343 -4.1917 0.0369 39 1 9.1140 -5.4968 1.6408 40 1 9.9606 -4.0242 1.1062 41 1 8.4031 -4.3590 3.7114 42 1 10.1747 -4.2850 3.5502 43 1 12.0644 -3.1900 5.4523 44 1 7.8226 -0.8517 2.5541 45 1 7.0158 -2.3444 3.0912 46 1 4.7915 -4.1165 1.3192 47 1 5.5584 -3.1506 2.6025 48 1 3.8932 -2.7869 2.0896 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519189033.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:16 Heat of formation + Delta-G solvation = 124.566618 kcal Electronic energy + Delta-G solvation = -27168.389747 eV Core-core repulsion = 23646.883054 eV Total energy + Delta-G solvation = -3521.506693 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.88829 -38.62920 -37.20893 -34.86575 -33.77518 -33.17338 -31.90553 -30.38553 -30.10895 -28.50714 -27.67024 -25.14409 -24.90656 -23.60870 -22.85598 -21.73581 -20.88990 -19.97366 -18.93790 -18.31629 -17.22395 -16.58779 -16.24806 -15.79464 -15.31214 -14.78687 -14.53622 -14.45674 -14.38402 -13.98766 -13.88018 -13.47321 -13.15890 -13.04625 -12.69557 -12.62077 -12.60279 -12.32448 -11.97034 -11.74433 -11.54957 -11.28859 -11.10222 -11.05901 -10.92333 -10.80407 -10.50395 -10.32070 -10.31539 -10.21938 -10.04089 -10.00362 -9.70183 -9.36441 -8.93068 -8.73122 -8.45709 -8.27632 -6.08592 -4.15703 1.83703 2.40160 2.61086 2.62039 3.06094 3.23703 3.32548 3.35138 3.76491 3.96855 4.29916 4.37452 4.45924 4.55702 4.74304 4.84003 4.94423 5.10121 5.15138 5.20883 5.23725 5.31897 5.34909 5.36563 5.51203 5.65997 5.69034 5.73138 5.75036 5.77736 5.84279 5.95145 5.96327 6.06312 6.09792 6.20366 6.26468 6.46578 6.50048 6.63306 6.77572 6.93376 7.18266 7.29291 7.36751 7.60976 7.64353 7.91037 8.01199 8.30560 8.87336 9.01487 9.49531 10.97591 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018521 B = 0.003245 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.443498 B = 8625.964520 C = 9435.325214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.177 4.177 3 C -0.005 4.005 4 C 0.012 3.988 5 H 0.086 0.914 6 C -0.113 4.113 7 C -0.151 4.151 8 C 0.172 3.828 9 N -0.284 5.284 10 N -0.273 5.273 11 C 0.364 3.636 12 N -0.444 5.444 13 C 0.061 3.939 14 C -0.117 4.117 15 C -0.113 4.113 16 C 0.057 3.943 17 H 0.041 0.959 18 C -0.518 4.518 19 H 0.055 0.945 20 C 0.065 3.935 21 N -0.885 5.885 22 Si 0.892 3.108 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.283 1.283 26 C 0.070 3.930 27 N -0.499 5.499 28 C 0.063 3.937 29 H 0.216 0.784 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.034 0.966 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.032 0.968 42 H 0.097 0.903 43 H 0.261 0.739 44 H 0.069 0.931 45 H 0.028 0.972 46 H 0.080 0.920 47 H 0.098 0.902 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.731 -2.638 -8.639 20.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.178 4.178 3 C -0.042 4.042 4 C -0.009 4.009 5 H 0.104 0.896 6 C -0.151 4.151 7 C -0.208 4.208 8 C -0.096 4.096 9 N -0.125 5.125 10 N -0.114 5.114 11 C 0.009 3.991 12 N -0.168 5.168 13 C -0.066 4.066 14 C -0.155 4.155 15 C -0.151 4.151 16 C 0.038 3.962 17 H 0.059 0.941 18 C -0.556 4.556 19 H 0.073 0.927 20 C -0.136 4.136 21 N -0.524 5.524 22 Si 0.720 3.280 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.209 1.209 26 C -0.056 4.056 27 N -0.197 5.197 28 C -0.080 4.080 29 H 0.233 0.767 30 H 0.120 0.880 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.051 0.949 42 H 0.115 0.885 43 H 0.071 0.929 44 H 0.087 0.913 45 H 0.047 0.953 46 H 0.098 0.902 47 H 0.116 0.884 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.535 -1.606 -9.845 20.173 hybrid contribution -1.228 -0.997 2.495 2.954 sum -18.762 -2.603 -7.350 20.318 Atomic orbital electron populations 1.24857 0.95863 1.00490 1.01628 1.22926 0.94196 1.00593 1.00043 1.18711 0.84667 0.96577 1.04252 1.19514 0.84422 0.97223 0.99720 0.89584 1.21588 1.01488 0.97174 0.94871 1.21759 1.01475 0.95967 1.01592 1.24323 0.96224 0.96063 0.93003 1.74075 0.95371 1.21014 1.22004 1.74542 1.12937 1.13468 1.10462 1.23564 0.80361 0.97850 0.97347 1.59307 1.28933 1.09934 1.18624 1.22280 0.99459 0.84576 1.00282 1.21713 0.95575 0.98573 0.99644 1.21716 1.03188 0.98753 0.91448 1.18707 0.90617 0.92112 0.94799 0.94053 1.21074 1.04572 1.34342 0.95661 0.92715 1.24914 0.95418 0.94923 0.98393 1.69881 1.08083 1.38256 1.36145 0.86541 0.78096 0.78503 0.84882 1.19851 1.21025 1.20891 1.22605 1.01163 0.99818 0.82023 1.47448 1.08438 1.34595 1.29185 1.22335 1.01727 0.92558 0.91392 0.76674 0.87982 0.89289 0.90819 0.90270 0.92980 0.92308 0.92972 0.94774 0.91620 0.92581 0.91311 0.94925 0.88473 0.92900 0.91290 0.95348 0.90193 0.88399 0.89357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.72 19.25 29.55 0.57 -1.15 16 2 C -0.18 -1.68 12.23 -37.12 -0.45 -2.13 16 3 C 0.00 -0.05 5.17 -29.52 -0.15 -0.20 16 4 C 0.01 0.12 2.20 -91.77 -0.20 -0.08 16 5 H 0.09 0.75 6.94 -51.93 -0.36 0.39 16 6 C -0.11 -1.05 5.28 -26.73 -0.14 -1.19 16 7 C -0.15 -1.38 9.73 37.15 0.36 -1.02 16 8 C 0.17 2.37 5.56 -154.02 -0.86 1.51 16 9 N -0.28 -4.88 12.18 32.99 0.40 -4.48 16 10 N -0.27 -5.38 12.23 30.32 0.37 -5.01 16 11 C 0.36 6.53 6.65 -318.86 -2.12 4.41 16 12 N -0.44 -8.36 4.70 -174.55 -0.82 -9.18 16 13 C 0.06 1.01 5.13 -3.83 -0.02 0.99 16 14 C -0.12 -2.09 6.09 -26.65 -0.16 -2.25 16 15 C -0.11 -2.45 5.02 -26.61 -0.13 -2.58 16 16 C 0.06 1.34 2.26 -91.69 -0.21 1.13 16 17 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 18 C -0.52 -13.48 8.56 -34.44 -0.29 -13.78 16 19 H 0.05 1.41 7.74 -52.48 -0.41 1.01 16 20 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 21 N -0.89 -24.21 11.35 55.43 0.63 -23.58 16 22 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 26 C 0.07 1.42 4.47 -3.84 -0.02 1.40 16 27 N -0.50 -7.14 3.21 -121.46 -0.39 -7.53 16 28 C 0.06 0.67 9.20 59.84 0.55 1.22 16 29 H 0.22 1.02 7.80 -54.10 -0.42 0.60 16 30 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.60 7.23 -51.93 -0.38 0.23 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.59 7.38 -51.92 -0.38 0.21 16 37 H 0.03 0.50 5.66 -51.93 -0.29 0.21 16 38 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.10 2.39 6.15 -51.93 -0.32 2.07 16 43 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 44 H 0.07 1.49 8.10 -51.93 -0.42 1.07 16 45 H 0.03 0.54 5.73 -51.93 -0.30 0.24 16 46 H 0.08 0.71 7.96 -51.93 -0.41 0.30 16 47 H 0.10 1.18 4.96 -51.93 -0.26 0.92 16 48 H 0.09 0.72 7.23 -51.93 -0.38 0.34 16 LS Contribution 379.23 15.07 5.71 5.71 Total: -1.00 -30.05 379.23 -10.18 -40.23 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -7.69 Total: 0.42 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -3.37 Total: -12.08 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: 0.19 Total: -49.78 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.05 -10.18 -40.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519189033.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.796 kcal (2) G-P(sol) polarization free energy of solvation -30.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds