Wall clock time and date at job start Tue Mar 31 2020 11:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47168 * 10.26207 * 3 2 1 5 5 H 1.09002 * 109.47196 * 304.99750 * 4 3 2 6 6 C 1.53000 * 109.47341 * 64.99557 * 4 3 2 7 7 C 1.52994 * 109.47355 * 184.99895 * 6 4 3 8 8 C 1.50701 * 109.47011 * 185.00033 * 4 3 2 9 9 N 1.30291 * 126.34682 * 299.68595 * 8 4 3 10 10 N 1.28525 * 110.05701 * 179.82548 * 9 8 4 11 11 C 1.31224 * 109.85654 * 0.45231 * 10 9 8 12 12 N 1.38581 * 126.47096 * 179.73518 * 11 10 9 13 13 C 1.46849 * 110.99496 * 236.03930 * 12 11 10 14 14 C 1.53042 * 109.52027 * 174.15731 * 13 12 11 15 15 C 1.53117 * 109.27609 * 59.18633 * 14 13 12 16 16 C 1.53122 * 109.15932 * 302.34418 * 15 14 13 17 17 H 1.09002 * 109.50361 * 297.67203 * 16 15 14 18 18 C 1.50698 * 109.50446 * 177.59841 * 16 15 14 19 19 H 1.08003 * 120.00232 * 239.99845 * 18 16 15 20 20 C 1.37878 * 120.00463 * 59.99386 * 18 16 15 21 21 N 1.31514 * 119.99665 * 0.02562 * 20 18 16 22 22 Si 1.86799 * 120.00201 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47293 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47167 * 120.00254 * 22 20 18 25 25 H 1.48505 * 109.46956 * 240.00093 * 22 20 18 26 26 C 1.46839 * 110.99996 * 111.83515 * 12 11 10 27 27 N 1.36455 * 107.05385 * 359.73038 * 11 10 9 28 28 C 1.46493 * 127.13817 * 180.02562 * 27 11 10 29 29 H 4.44645 * 5.63342 * 179.97438 * 4 1 2 30 30 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 31 31 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 32 32 H 1.08999 * 109.47392 * 305.00621 * 6 4 3 33 33 H 1.09006 * 109.46749 * 65.00225 * 6 4 3 34 34 H 1.09001 * 109.47150 * 60.00009 * 7 6 4 35 35 H 1.09001 * 109.47620 * 180.02562 * 7 6 4 36 36 H 1.09009 * 109.47419 * 300.00609 * 7 6 4 37 37 H 1.08994 * 109.46632 * 294.17908 * 13 12 11 38 38 H 1.09001 * 109.46082 * 54.16218 * 13 12 11 39 39 H 1.09003 * 109.50242 * 179.12186 * 14 13 12 40 40 H 1.08998 * 109.50671 * 299.24497 * 14 13 12 41 41 H 1.08996 * 109.52434 * 62.24543 * 15 14 13 42 42 H 1.08993 * 109.52650 * 182.37649 * 15 14 13 43 43 H 0.96996 * 119.99978 * 179.97438 * 21 20 18 44 44 H 1.09001 * 109.46588 * 305.85006 * 26 12 11 45 45 H 1.08998 * 109.46630 * 65.82201 * 26 12 11 46 46 H 1.08997 * 109.47482 * 270.00500 * 28 27 11 47 47 H 1.09005 * 109.47199 * 30.00223 * 28 27 11 48 48 H 1.09003 * 109.47286 * 149.99676 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.4185 -0.2570 5 1 2.7223 -2.0991 0.4754 6 6 2.7520 -1.8590 -1.6652 7 6 3.1528 -3.3201 -1.8775 8 6 4.6585 -1.4416 -0.1354 9 7 5.5021 -0.7571 -0.8547 10 7 6.7060 -1.0125 -0.4843 11 6 6.6954 -1.8882 0.4929 12 7 7.8021 -2.4087 1.1447 13 6 7.8108 -3.8756 1.0772 14 6 9.1146 -4.4073 1.6768 15 6 9.2278 -3.9441 3.1319 16 6 9.1673 -2.4148 3.1785 17 1 10.0145 -2.0003 2.6321 18 6 9.2187 -1.9527 4.6120 19 1 8.4036 -1.3755 5.0229 20 6 10.3063 -2.2668 5.3991 21 7 11.2991 -2.9693 4.8987 22 14 10.3696 -1.6946 7.1762 23 1 9.1382 -0.9276 7.4934 24 1 10.4621 -2.8745 8.0731 25 1 11.5586 -0.8274 7.3749 26 6 7.8621 -1.9408 2.5353 27 7 5.3888 -2.1895 0.7461 28 6 4.8751 -3.1205 1.7538 29 1 -1.0498 -0.0004 0.0001 30 1 3.0090 0.6649 -0.7843 31 1 3.0092 0.3479 0.9672 32 1 1.6730 -1.7575 -1.7817 33 1 3.2573 -1.2331 -2.4009 34 1 2.6476 -3.9460 -1.1419 35 1 2.8650 -3.6339 -2.8809 36 1 4.2319 -3.4216 -1.7610 37 1 6.9648 -4.2701 1.6399 38 1 7.7343 -4.1917 0.0369 39 1 9.1140 -5.4968 1.6408 40 1 9.9606 -4.0242 1.1062 41 1 8.4031 -4.3590 3.7114 42 1 10.1747 -4.2850 3.5502 43 1 12.0644 -3.1900 5.4523 44 1 7.8226 -0.8517 2.5541 45 1 7.0158 -2.3444 3.0912 46 1 4.7915 -4.1165 1.3192 47 1 5.5584 -3.1506 2.6025 48 1 3.8932 -2.7869 2.0896 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001519189033.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:15 Heat of formation + Delta-G solvation = 109.938437 kcal Electronic energy + Delta-G solvation = -27169.024072 eV Core-core repulsion = 23646.883054 eV Total energy + Delta-G solvation = -3522.141019 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.11867 -40.12372 -38.06318 -36.21344 -35.30495 -33.99361 -33.46006 -31.88256 -31.21488 -29.67141 -28.67043 -27.04004 -25.77425 -25.09496 -23.76243 -23.37472 -22.21091 -20.99544 -20.54582 -18.96957 -18.73757 -17.97684 -17.47811 -17.14845 -16.60784 -16.29194 -15.94462 -15.47845 -15.27212 -15.12990 -14.82744 -14.68684 -14.49806 -14.27802 -14.19936 -13.88688 -13.80228 -13.49031 -13.09113 -12.89136 -12.74041 -12.63854 -12.58223 -12.46728 -12.22780 -11.96508 -11.89653 -11.85568 -11.54998 -11.41090 -11.22175 -11.11345 -11.04473 -10.98250 -10.77428 -10.43577 -10.03356 -9.71849 -8.10636 -6.24971 0.65447 1.34150 1.40509 1.43654 1.53498 1.72643 1.96690 1.97609 2.34855 2.50022 3.12402 3.17559 3.48995 3.64242 3.73225 3.89375 3.97832 3.99704 4.04570 4.12645 4.19089 4.29257 4.35960 4.41506 4.45048 4.54528 4.59148 4.62449 4.70257 4.75252 4.80186 4.87183 4.91468 4.96916 4.99041 5.05066 5.09093 5.19379 5.23071 5.27562 5.33475 5.42990 5.57866 5.61880 5.74887 5.97870 6.12651 6.28670 6.33922 6.74241 6.85500 7.43429 7.75381 8.94478 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018521 B = 0.003245 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.443498 B = 8625.964520 C = 9435.325214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.214 4.214 3 C 0.001 3.999 4 C 0.016 3.984 5 H 0.111 0.889 6 C -0.108 4.108 7 C -0.147 4.147 8 C 0.196 3.804 9 N -0.316 5.316 10 N -0.315 5.315 11 C 0.350 3.650 12 N -0.461 5.461 13 C 0.066 3.934 14 C -0.109 4.109 15 C -0.103 4.103 16 C 0.056 3.944 17 H -0.004 1.004 18 C -0.535 4.535 19 H 0.053 0.947 20 C 0.019 3.981 21 N -0.912 5.912 22 Si 0.954 3.046 23 H -0.268 1.268 24 H -0.277 1.277 25 H -0.285 1.285 26 C 0.089 3.911 27 N -0.494 5.494 28 C 0.053 3.947 29 H 0.247 0.753 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.025 0.975 37 H 0.059 0.941 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.049 0.951 41 H 0.039 0.961 42 H 0.064 0.936 43 H 0.262 0.738 44 H 0.045 0.955 45 H 0.046 0.954 46 H 0.105 0.895 47 H 0.085 0.915 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.337 -3.955 -8.174 24.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.214 4.214 3 C -0.037 4.037 4 C -0.005 4.005 5 H 0.129 0.871 6 C -0.146 4.146 7 C -0.204 4.204 8 C -0.073 4.073 9 N -0.156 5.156 10 N -0.156 5.156 11 C -0.006 4.006 12 N -0.186 5.186 13 C -0.060 4.060 14 C -0.147 4.147 15 C -0.142 4.142 16 C 0.037 3.963 17 H 0.014 0.986 18 C -0.574 4.574 19 H 0.071 0.929 20 C -0.181 4.181 21 N -0.551 5.551 22 Si 0.779 3.221 23 H -0.192 1.192 24 H -0.203 1.203 25 H -0.211 1.211 26 C -0.038 4.038 27 N -0.190 5.190 28 C -0.088 4.088 29 H 0.263 0.737 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.045 0.955 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.123 0.877 47 H 0.103 0.897 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -21.159 -2.934 -9.383 23.331 hybrid contribution -0.203 -0.550 2.306 2.379 sum -21.362 -3.485 -7.077 22.772 Atomic orbital electron populations 1.25642 0.96602 0.98536 0.99718 1.22916 0.94326 1.02391 1.01790 1.18538 0.85552 0.96065 1.03549 1.19736 0.81600 0.98120 1.01021 0.87127 1.21551 1.02321 0.97018 0.93711 1.21739 0.99856 0.96031 1.02818 1.25012 0.97433 0.93764 0.91061 1.74000 0.95165 1.22781 1.23678 1.74426 1.14655 1.14645 1.11923 1.23200 0.81386 0.98430 0.97618 1.59070 1.30664 1.11439 1.17441 1.22293 0.99248 0.83130 1.01323 1.21609 0.95974 1.00414 0.96661 1.21487 1.01624 0.97030 0.94011 1.18588 0.90685 0.93557 0.93467 0.98620 1.21413 1.04666 1.34330 0.96955 0.92903 1.25660 0.95152 0.95068 1.02204 1.70022 1.08520 1.39120 1.37451 0.85576 0.77980 0.78143 0.80356 1.19195 1.20255 1.21092 1.22187 0.99861 0.98344 0.83364 1.47500 1.07157 1.34794 1.29579 1.22661 1.02727 0.93206 0.90226 0.73682 0.89128 0.89902 0.88999 0.91995 0.91116 0.91466 0.95536 0.92249 0.90295 0.89446 0.93170 0.94214 0.91703 0.92914 0.93617 0.93612 0.87660 0.89651 0.86190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.39 19.25 74.32 1.43 -0.96 16 2 C -0.21 -3.52 12.23 31.13 0.38 -3.14 16 3 C 0.00 0.01 5.17 28.79 0.15 0.16 16 4 C 0.02 0.29 2.20 -11.54 -0.03 0.26 16 5 H 0.11 1.47 6.94 -2.39 -0.02 1.45 16 6 C -0.11 -1.77 5.28 30.59 0.16 -1.61 16 7 C -0.15 -2.31 9.73 71.98 0.70 -1.61 16 8 C 0.20 5.19 5.56 137.64 0.76 5.96 16 9 N -0.32 -11.02 12.18 -49.54 -0.60 -11.62 16 10 N -0.32 -12.74 12.23 -58.00 -0.71 -13.45 16 11 C 0.35 12.56 6.65 260.11 1.73 14.29 16 12 N -0.46 -17.54 4.70 -706.16 -3.32 -20.86 16 13 C 0.07 2.09 5.13 86.33 0.44 2.54 16 14 C -0.11 -3.82 6.09 30.65 0.19 -3.64 16 15 C -0.10 -4.53 5.02 30.67 0.15 -4.38 16 16 C 0.06 2.75 2.26 -11.49 -0.03 2.72 16 17 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 18 C -0.54 -28.53 8.56 25.60 0.22 -28.31 16 19 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 20 C 0.02 1.00 5.30 84.66 0.45 1.45 16 21 N -0.91 -51.30 11.35 21.45 0.24 -51.06 16 22 Si 0.95 42.42 29.54 68.60 2.03 44.45 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 24 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 25 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 26 C 0.09 3.69 4.47 86.33 0.39 4.07 16 27 N -0.49 -13.35 3.21 -538.19 -1.73 -15.07 16 28 C 0.05 0.96 9.20 127.77 1.18 2.13 16 29 H 0.25 1.22 7.80 -4.43 -0.03 1.19 16 30 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.09 1.21 7.23 -2.39 -0.02 1.20 16 33 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.03 0.55 7.38 -2.38 -0.02 0.53 16 37 H 0.06 1.57 5.66 -2.39 -0.01 1.56 16 38 H 0.08 2.31 8.10 -2.39 -0.02 2.29 16 39 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.06 3.28 6.15 -2.39 -0.01 3.27 16 43 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 44 H 0.05 2.06 8.10 -2.39 -0.02 2.05 16 45 H 0.05 1.72 5.73 -2.39 -0.01 1.71 16 46 H 0.11 1.41 7.96 -2.39 -0.02 1.39 16 47 H 0.08 1.81 4.96 -2.38 -0.01 1.80 16 48 H 0.12 1.41 7.23 -2.39 -0.02 1.40 16 Total: -1.00 -68.91 379.23 5.13 -63.78 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.94 Total: 13.89 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: 8.28 Total: -10.05 kcal Atomic # 7 Polarization: -105.95 SS G_CDS: -6.11 Total: -112.06 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -68.91 5.13 -63.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519189033.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.720 kcal (2) G-P(sol) polarization free energy of solvation -68.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds