Wall clock time and date at job start Tue Mar 31 2020 11:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.29827 * 118.35968 * 2 1 4 4 C 1.50299 * 122.89547 * 180.35102 * 3 2 1 5 5 C 1.53093 * 109.72240 * 343.54491 * 4 3 2 6 6 N 1.47248 * 108.47113 * 48.94492 * 5 4 3 7 7 C 1.38570 * 110.99910 * 167.80783 * 6 5 4 8 8 N 1.31224 * 126.47614 * 359.00199 * 7 6 5 9 9 N 1.28530 * 109.86060 * 179.97438 * 8 7 6 10 10 C 1.30290 * 110.05509 * 0.02562 * 9 8 7 11 11 C 1.50699 * 126.34603 * 179.97438 * 10 9 8 12 12 C 1.53004 * 109.46667 * 270.03703 * 11 10 9 13 13 C 1.50707 * 109.47050 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99870 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00213 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00041 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 119.99798 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.46971 * 90.00347 * 17 15 13 19 19 H 1.48500 * 109.47022 * 209.99772 * 17 15 13 20 20 H 1.48498 * 109.47425 * 330.00586 * 17 15 13 21 21 N 1.36458 * 126.47170 * 178.97671 * 7 6 5 22 22 C 1.46490 * 127.13747 * 0.28255 * 21 7 6 23 23 C 1.53006 * 109.47217 * 269.70852 * 22 21 7 24 24 C 1.52999 * 117.49832 * 243.62086 * 23 22 21 25 25 C 1.52999 * 60.00139 * 252.51050 * 24 23 22 26 26 C 1.46844 * 110.20346 * 291.19854 * 6 5 4 27 27 H 1.09006 * 109.47348 * 269.97776 * 1 2 3 28 28 H 1.09005 * 109.47563 * 29.97406 * 1 2 3 29 29 H 1.09002 * 109.47474 * 149.97419 * 1 2 3 30 30 H 1.08001 * 118.54661 * 0.37470 * 3 2 1 31 31 H 1.09005 * 109.43094 * 103.60158 * 4 3 2 32 32 H 1.08997 * 109.43144 * 223.45211 * 4 3 2 33 33 H 1.08997 * 109.63486 * 289.25084 * 5 4 3 34 34 H 1.08999 * 109.63743 * 168.63847 * 5 4 3 35 35 H 1.08997 * 109.47391 * 30.04010 * 11 10 9 36 36 H 1.09009 * 109.47044 * 150.04482 * 11 10 9 37 37 H 1.08999 * 109.47575 * 299.99732 * 12 11 10 38 38 H 1.08997 * 109.47019 * 60.00296 * 12 11 10 39 39 H 0.96998 * 120.00023 * 179.97438 * 16 15 13 40 40 H 1.09005 * 109.47327 * 29.70780 * 22 21 7 41 41 H 1.09001 * 109.47225 * 149.70745 * 22 21 7 42 42 H 1.08993 * 115.54866 * 29.33350 * 23 22 21 43 43 H 1.08998 * 117.49857 * 359.97438 * 24 23 22 44 44 H 1.09005 * 117.49680 * 145.02206 * 24 23 22 45 45 H 1.08999 * 117.50208 * 252.51515 * 25 24 23 46 46 H 1.09002 * 117.50038 * 107.49197 * 25 24 23 47 47 H 1.09000 * 109.33367 * 171.17446 * 26 6 5 48 48 H 1.09003 * 109.33498 * 290.67887 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1237 1.1425 0.0000 4 6 3.6219 1.2613 -0.0077 5 6 4.2484 -0.0768 0.3932 6 7 3.6207 -1.1435 -0.4045 7 6 4.3256 -2.3307 -0.2882 8 7 5.4207 -2.5228 0.4089 9 7 5.8038 -3.7441 0.2927 10 6 4.9832 -4.3982 -0.4795 11 6 5.0852 -5.8519 -0.8636 12 6 5.9153 -5.9844 -2.1420 13 6 6.0169 -7.4381 -2.5265 14 1 5.5376 -8.1920 -1.9195 15 6 6.7224 -7.8057 -3.6526 16 7 6.8114 -9.0742 -3.9878 17 14 7.5518 -6.5019 -4.7021 18 1 8.9354 -6.2779 -4.2114 19 1 7.5953 -6.9575 -6.1148 20 1 6.7842 -5.2337 -4.6143 21 7 4.0120 -3.5213 -0.8767 22 6 2.8747 -3.8003 -1.7569 23 6 1.6811 -4.2604 -0.9175 24 6 1.1675 -5.6843 -1.1406 25 6 0.3538 -4.4900 -1.6431 26 6 2.2201 -1.3213 -0.0006 27 1 -0.3634 -0.0004 1.0277 28 1 -0.3634 0.8902 -0.5134 29 1 -0.3634 -0.8897 -0.5142 30 1 1.5340 2.0473 0.0062 31 1 3.9589 1.5339 -1.0079 32 1 3.9282 2.0318 0.6998 33 1 4.0728 -0.2604 1.4532 34 1 5.3200 -0.0536 0.1950 35 1 5.5663 -6.4074 -0.0587 36 1 4.0864 -6.2532 -1.0357 37 1 5.4341 -5.4289 -2.9470 38 1 6.9140 -5.5831 -1.9700 39 1 7.3075 -9.3328 -4.7803 40 1 2.6075 -2.8957 -2.3032 41 1 3.1460 -4.5847 -2.4634 42 1 1.6381 -3.8626 0.0964 43 1 1.6797 -6.2930 -1.8857 44 1 0.7867 -6.2236 -0.2733 45 1 -0.5624 -4.2436 -1.1064 46 1 0.3309 -4.3133 -2.7185 47 1 1.7264 -1.9976 -0.6984 48 1 2.1849 -1.7508 1.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519609047.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:48 Heat of formation + Delta-G solvation = 120.872842 kcal Electronic energy + Delta-G solvation = -27273.739631 eV Core-core repulsion = 23752.072764 eV Total energy + Delta-G solvation = -3521.666867 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.76013 -39.46103 -37.93536 -35.02854 -34.50241 -33.68839 -32.20343 -31.59956 -28.98825 -27.83821 -27.12352 -25.64357 -24.76025 -23.28908 -22.55939 -21.85256 -21.16073 -20.36370 -19.87165 -17.93633 -17.58107 -16.82095 -16.39694 -16.10133 -15.48880 -15.29052 -14.84545 -14.45295 -14.32260 -14.13204 -13.98377 -13.77679 -13.29148 -13.27045 -12.98670 -12.73351 -12.55382 -12.39206 -12.19047 -12.08442 -11.70108 -11.59216 -11.37246 -11.27493 -11.09385 -10.92478 -10.68763 -10.59067 -10.32663 -10.25565 -10.00326 -9.84865 -9.83081 -9.52743 -9.29626 -9.06082 -8.59073 -7.99797 -6.10251 -4.09617 1.85424 2.02270 2.38771 3.15941 3.29617 3.36854 3.40928 3.47854 3.62466 4.29559 4.39817 4.41269 4.47013 4.59931 4.69000 4.78588 4.87729 4.94298 4.96959 5.03569 5.06662 5.08331 5.19617 5.23581 5.24522 5.32568 5.34825 5.40686 5.44871 5.52950 5.56319 5.66512 5.73453 5.78025 5.82806 5.87425 5.97301 6.03563 6.22989 6.28710 6.32583 6.50526 6.56429 6.65969 6.84199 7.14310 7.26941 7.35676 7.69136 8.44101 8.92931 9.12335 9.51783 11.02573 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.015489 B = 0.003834 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.255938 B = 7300.983903 C = 8233.379090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.132 4.132 3 C -0.146 4.146 4 C -0.088 4.088 5 C 0.068 3.932 6 N -0.443 5.443 7 C 0.337 3.663 8 N -0.323 5.323 9 N -0.294 5.294 10 C 0.211 3.789 11 C -0.021 4.021 12 C -0.004 4.004 13 C -0.522 4.522 14 H 0.076 0.924 15 C 0.072 3.928 16 N -0.899 5.899 17 Si 0.876 3.124 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.268 1.268 21 N -0.476 5.476 22 C 0.136 3.864 23 C -0.184 4.184 24 C -0.168 4.168 25 C -0.168 4.168 26 C 0.083 3.917 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.012 0.988 38 H 0.021 0.979 39 H 0.264 0.736 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.100 0.900 47 H 0.100 0.900 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.701 18.702 6.683 25.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.132 4.132 3 C -0.164 4.164 4 C -0.125 4.125 5 C -0.059 4.059 6 N -0.166 5.166 7 C -0.020 4.020 8 N -0.168 5.168 9 N -0.132 5.132 10 C -0.057 4.057 11 C -0.061 4.061 12 C -0.043 4.043 13 C -0.560 4.560 14 H 0.094 0.906 15 C -0.130 4.130 16 N -0.538 5.538 17 Si 0.704 3.296 18 H -0.200 1.200 19 H -0.213 1.213 20 H -0.193 1.193 21 N -0.170 5.170 22 C 0.013 3.987 23 C -0.203 4.203 24 C -0.205 4.205 25 C -0.206 4.206 26 C -0.044 4.044 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.128 0.872 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.071 0.929 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.095 0.905 37 H 0.031 0.969 38 H 0.039 0.961 39 H 0.074 0.926 40 H 0.116 0.884 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.116 0.884 45 H 0.116 0.884 46 H 0.118 0.882 47 H 0.118 0.882 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.440 19.029 6.959 25.474 hybrid contribution -0.651 0.209 -0.821 1.068 sum -16.091 19.239 6.138 25.821 Atomic orbital electron populations 1.20843 0.91520 1.02753 1.02116 1.20854 0.95914 0.93861 1.02616 1.22086 0.96177 0.97158 1.01010 1.20604 0.92592 0.96496 1.02811 1.22165 1.00057 0.88516 0.95135 1.59057 1.02064 1.01397 1.54098 1.22493 0.96744 0.85452 0.97268 1.74518 1.11005 1.11021 1.20225 1.74002 1.23051 0.98429 1.17672 1.25538 0.86654 0.96497 0.97015 1.20215 1.02280 0.82462 1.01153 1.19552 0.95143 0.98367 0.91216 1.21007 1.33908 0.90626 1.10466 0.90590 1.24951 0.95679 0.95100 0.97268 1.69896 1.42032 1.15583 1.26264 0.86832 0.80681 0.82440 0.79673 1.20019 1.21299 1.19276 1.46150 1.23096 1.08703 1.39099 1.21525 0.82548 1.03494 0.91141 1.22694 0.94854 1.02063 1.00709 1.23164 1.03012 0.90432 1.03861 1.22976 0.93733 1.03063 1.00780 1.21313 0.86233 0.96503 1.00318 0.91577 0.91542 0.91694 0.87223 0.89784 0.89887 0.92905 0.88531 0.88818 0.90538 0.96945 0.96086 0.92601 0.88353 0.87447 0.87542 0.87409 0.88420 0.88446 0.88207 0.88220 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 9.90 36.00 0.36 -0.39 16 2 C -0.13 -1.17 5.91 -101.01 -0.60 -1.77 16 3 C -0.15 -1.23 9.49 -35.89 -0.34 -1.57 16 4 C -0.09 -0.77 6.32 -28.03 -0.18 -0.94 16 5 C 0.07 0.80 5.10 -3.59 -0.02 0.78 16 6 N -0.44 -5.86 4.76 -175.91 -0.84 -6.70 16 7 C 0.34 5.58 7.18 -318.87 -2.29 3.30 16 8 N -0.32 -6.30 11.11 30.31 0.34 -5.96 16 9 N -0.29 -6.22 12.18 32.99 0.40 -5.82 16 10 C 0.21 4.05 7.32 -154.01 -1.13 2.93 16 11 C -0.02 -0.42 5.36 -27.88 -0.15 -0.57 16 12 C 0.00 -0.10 4.02 -27.88 -0.11 -0.21 16 13 C -0.52 -14.35 9.66 -34.44 -0.33 -14.68 16 14 H 0.08 2.20 7.99 -52.48 -0.42 1.78 16 15 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 16 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 17 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 18 H -0.27 -6.84 7.11 56.52 0.40 -6.43 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 21 N -0.48 -7.74 2.81 -114.09 -0.32 -8.06 16 22 C 0.14 1.73 5.27 -4.04 -0.02 1.70 16 23 C -0.18 -1.91 4.33 -90.62 -0.39 -2.30 16 24 C -0.17 -1.69 10.18 -26.73 -0.27 -1.96 16 25 C -0.17 -1.37 10.25 -26.73 -0.27 -1.64 16 26 C 0.08 0.89 4.25 -5.28 -0.02 0.87 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.38 7.93 -51.93 -0.41 -0.04 16 29 H 0.06 0.39 8.06 -51.93 -0.42 -0.02 16 30 H 0.11 0.74 7.87 -52.49 -0.41 0.32 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 34 H 0.10 1.25 7.67 -51.93 -0.40 0.85 16 35 H 0.09 1.87 8.14 -51.93 -0.42 1.44 16 36 H 0.08 1.36 7.93 -51.92 -0.41 0.95 16 37 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 38 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.10 1.12 7.50 -51.93 -0.39 0.73 16 41 H 0.11 1.45 7.62 -51.93 -0.40 1.05 16 42 H 0.11 1.16 7.10 -51.93 -0.37 0.79 16 43 H 0.11 1.20 8.03 -51.93 -0.42 0.78 16 44 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.10 1.00 4.20 -51.93 -0.22 0.79 16 48 H 0.05 0.61 8.07 -51.93 -0.42 0.19 16 LS Contribution 381.19 15.07 5.74 5.74 Total: -1.00 -32.74 381.19 -12.43 -45.17 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -7.99 Total: -0.64 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -5.87 Total: -14.51 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.35 Total: -52.90 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.74 -12.43 -45.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519609047.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.044 kcal (2) G-P(sol) polarization free energy of solvation -32.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds