Wall clock time and date at job start Tue Mar 31 2020 11:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.29827 * 118.35968 * 2 1 4 4 C 1.50299 * 122.89547 * 180.35102 * 3 2 1 5 5 C 1.53093 * 109.72240 * 343.54491 * 4 3 2 6 6 N 1.47248 * 108.47113 * 48.94492 * 5 4 3 7 7 C 1.38570 * 110.99910 * 167.80783 * 6 5 4 8 8 N 1.31224 * 126.47614 * 359.00199 * 7 6 5 9 9 N 1.28530 * 109.86060 * 179.97438 * 8 7 6 10 10 C 1.30290 * 110.05509 * 0.02562 * 9 8 7 11 11 C 1.50699 * 126.34603 * 179.97438 * 10 9 8 12 12 C 1.53004 * 109.46667 * 270.03703 * 11 10 9 13 13 C 1.50707 * 109.47050 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99870 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00213 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00041 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 119.99798 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.46971 * 90.00347 * 17 15 13 19 19 H 1.48500 * 109.47022 * 209.99772 * 17 15 13 20 20 H 1.48498 * 109.47425 * 330.00586 * 17 15 13 21 21 N 1.36458 * 126.47170 * 178.97671 * 7 6 5 22 22 C 1.46490 * 127.13747 * 0.28255 * 21 7 6 23 23 C 1.53006 * 109.47217 * 269.70852 * 22 21 7 24 24 C 1.52999 * 117.49832 * 243.62086 * 23 22 21 25 25 C 1.52999 * 60.00139 * 252.51050 * 24 23 22 26 26 C 1.46844 * 110.20346 * 291.19854 * 6 5 4 27 27 H 1.09006 * 109.47348 * 269.97776 * 1 2 3 28 28 H 1.09005 * 109.47563 * 29.97406 * 1 2 3 29 29 H 1.09002 * 109.47474 * 149.97419 * 1 2 3 30 30 H 1.08001 * 118.54661 * 0.37470 * 3 2 1 31 31 H 1.09005 * 109.43094 * 103.60158 * 4 3 2 32 32 H 1.08997 * 109.43144 * 223.45211 * 4 3 2 33 33 H 1.08997 * 109.63486 * 289.25084 * 5 4 3 34 34 H 1.08999 * 109.63743 * 168.63847 * 5 4 3 35 35 H 1.08997 * 109.47391 * 30.04010 * 11 10 9 36 36 H 1.09009 * 109.47044 * 150.04482 * 11 10 9 37 37 H 1.08999 * 109.47575 * 299.99732 * 12 11 10 38 38 H 1.08997 * 109.47019 * 60.00296 * 12 11 10 39 39 H 0.96998 * 120.00023 * 179.97438 * 16 15 13 40 40 H 1.09005 * 109.47327 * 29.70780 * 22 21 7 41 41 H 1.09001 * 109.47225 * 149.70745 * 22 21 7 42 42 H 1.08993 * 115.54866 * 29.33350 * 23 22 21 43 43 H 1.08998 * 117.49857 * 359.97438 * 24 23 22 44 44 H 1.09005 * 117.49680 * 145.02206 * 24 23 22 45 45 H 1.08999 * 117.50208 * 252.51515 * 25 24 23 46 46 H 1.09002 * 117.50038 * 107.49197 * 25 24 23 47 47 H 1.09000 * 109.33367 * 171.17446 * 26 6 5 48 48 H 1.09003 * 109.33498 * 290.67887 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1237 1.1425 0.0000 4 6 3.6219 1.2613 -0.0077 5 6 4.2484 -0.0768 0.3932 6 7 3.6207 -1.1435 -0.4045 7 6 4.3256 -2.3307 -0.2882 8 7 5.4207 -2.5228 0.4089 9 7 5.8038 -3.7441 0.2927 10 6 4.9832 -4.3982 -0.4795 11 6 5.0852 -5.8519 -0.8636 12 6 5.9153 -5.9844 -2.1420 13 6 6.0169 -7.4381 -2.5265 14 1 5.5376 -8.1920 -1.9195 15 6 6.7224 -7.8057 -3.6526 16 7 6.8114 -9.0742 -3.9878 17 14 7.5518 -6.5019 -4.7021 18 1 8.9354 -6.2779 -4.2114 19 1 7.5953 -6.9575 -6.1148 20 1 6.7842 -5.2337 -4.6143 21 7 4.0120 -3.5213 -0.8767 22 6 2.8747 -3.8003 -1.7569 23 6 1.6811 -4.2604 -0.9175 24 6 1.1675 -5.6843 -1.1406 25 6 0.3538 -4.4900 -1.6431 26 6 2.2201 -1.3213 -0.0006 27 1 -0.3634 -0.0004 1.0277 28 1 -0.3634 0.8902 -0.5134 29 1 -0.3634 -0.8897 -0.5142 30 1 1.5340 2.0473 0.0062 31 1 3.9589 1.5339 -1.0079 32 1 3.9282 2.0318 0.6998 33 1 4.0728 -0.2604 1.4532 34 1 5.3200 -0.0536 0.1950 35 1 5.5663 -6.4074 -0.0587 36 1 4.0864 -6.2532 -1.0357 37 1 5.4341 -5.4289 -2.9470 38 1 6.9140 -5.5831 -1.9700 39 1 7.3075 -9.3328 -4.7803 40 1 2.6075 -2.8957 -2.3032 41 1 3.1460 -4.5847 -2.4634 42 1 1.6381 -3.8626 0.0964 43 1 1.6797 -6.2930 -1.8857 44 1 0.7867 -6.2236 -0.2733 45 1 -0.5624 -4.2436 -1.1064 46 1 0.3309 -4.3133 -2.7185 47 1 1.7264 -1.9976 -0.6984 48 1 2.1849 -1.7508 1.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001519609047.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:47 Heat of formation + Delta-G solvation = 104.992662 kcal Electronic energy + Delta-G solvation = -27274.428247 eV Core-core repulsion = 23752.072764 eV Total energy + Delta-G solvation = -3522.355483 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.12636 -40.36864 -38.80793 -36.32692 -35.76749 -35.13273 -33.77378 -32.74686 -30.50397 -28.96271 -27.96069 -27.17920 -25.83560 -24.19786 -23.37813 -23.27557 -22.47325 -21.53874 -21.22850 -19.10207 -18.75835 -18.50058 -17.51029 -17.26974 -16.43959 -16.35432 -16.14513 -15.83811 -15.31714 -15.18068 -15.11092 -14.93795 -14.69993 -14.59786 -14.10092 -13.97235 -13.56592 -13.37648 -13.10609 -13.01092 -12.99236 -12.81612 -12.67670 -12.39648 -12.34759 -12.12622 -12.02989 -11.83841 -11.70882 -11.56111 -11.47495 -11.41996 -11.13506 -11.03909 -10.81028 -10.77982 -9.71905 -9.31776 -8.31845 -6.35454 0.68704 1.13935 1.23670 1.31459 1.34325 1.43515 1.72777 2.31853 2.47995 2.74679 3.03465 3.33140 3.55890 3.59117 3.64318 3.73079 3.88797 3.98045 4.01680 4.06383 4.10671 4.13444 4.22689 4.25506 4.44986 4.47825 4.48137 4.52011 4.64757 4.73645 4.76757 4.79804 4.84318 4.89493 4.92616 4.97642 5.05438 5.07343 5.11138 5.18527 5.23457 5.25513 5.33622 5.39292 5.55810 5.59676 5.68747 5.98498 6.12925 6.22968 6.71149 7.29129 7.69274 8.84054 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.015489 B = 0.003834 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.255938 B = 7300.983903 C = 8233.379090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.143 4.143 3 C -0.146 4.146 4 C -0.082 4.082 5 C 0.065 3.935 6 N -0.442 5.442 7 C 0.352 3.648 8 N -0.357 5.357 9 N -0.327 5.327 10 C 0.199 3.801 11 C -0.007 4.007 12 C 0.005 3.995 13 C -0.525 4.525 14 H 0.049 0.951 15 C 0.018 3.982 16 N -0.941 5.941 17 Si 0.937 3.063 18 H -0.274 1.274 19 H -0.277 1.277 20 H -0.257 1.257 21 N -0.471 5.471 22 C 0.131 3.869 23 C -0.190 4.190 24 C -0.183 4.183 25 C -0.138 4.138 26 C 0.084 3.916 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.134 0.866 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.047 0.953 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.018 0.982 38 H 0.007 0.993 39 H 0.268 0.732 40 H 0.115 0.885 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.120 0.880 46 H 0.110 0.890 47 H 0.108 0.892 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.109 21.496 6.033 29.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.143 4.143 3 C -0.164 4.164 4 C -0.120 4.120 5 C -0.061 4.061 6 N -0.166 5.166 7 C -0.005 4.005 8 N -0.201 5.201 9 N -0.165 5.165 10 C -0.070 4.070 11 C -0.047 4.047 12 C -0.033 4.033 13 C -0.563 4.563 14 H 0.067 0.933 15 C -0.180 4.180 16 N -0.582 5.582 17 Si 0.761 3.239 18 H -0.200 1.200 19 H -0.203 1.203 20 H -0.181 1.181 21 N -0.165 5.165 22 C 0.010 3.990 23 C -0.209 4.209 24 C -0.220 4.220 25 C -0.175 4.175 26 C -0.042 4.042 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.152 0.848 31 H 0.104 0.896 32 H 0.123 0.877 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.036 0.964 38 H 0.025 0.975 39 H 0.077 0.923 40 H 0.133 0.867 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.111 0.889 44 H 0.120 0.880 45 H 0.138 0.862 46 H 0.128 0.872 47 H 0.126 0.874 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -17.880 21.839 6.309 28.921 hybrid contribution 0.050 -0.643 -0.572 0.862 sum -17.830 21.196 5.737 28.286 Atomic orbital electron populations 1.20853 0.89533 1.03671 1.02792 1.20979 0.97222 0.92766 1.03351 1.22296 0.95878 0.98019 1.00242 1.20623 0.93013 0.94880 1.03445 1.22248 0.99433 0.89735 0.94720 1.59258 1.03194 0.99986 1.54182 1.22874 0.95874 0.86242 0.95509 1.74430 1.12915 1.10574 1.22195 1.73900 1.24345 0.99438 1.18794 1.25188 0.87700 0.96350 0.97810 1.19924 1.02413 0.83353 0.99033 1.19378 0.95129 0.95651 0.93178 1.21270 1.33015 0.92100 1.09891 0.93250 1.25751 0.96500 0.97001 0.98746 1.70015 1.43375 1.17564 1.27210 0.85866 0.79515 0.80183 0.78300 1.19988 1.20250 1.18102 1.46265 1.23260 1.07998 1.38984 1.21796 0.82162 1.04068 0.91003 1.22543 0.95355 1.02396 1.00593 1.23182 1.04129 0.90599 1.04083 1.23104 0.93053 0.99925 1.01410 1.21397 0.84607 0.98284 0.99902 0.90982 0.90297 0.91137 0.84827 0.89633 0.87689 0.93505 0.90313 0.89556 0.88835 0.96374 0.97500 0.92322 0.86720 0.88345 0.87875 0.88903 0.87972 0.86221 0.87156 0.87406 0.93928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 9.90 71.24 0.71 -0.35 16 2 C -0.14 -2.11 5.91 -15.45 -0.09 -2.20 16 3 C -0.15 -1.99 9.49 26.73 0.25 -1.73 16 4 C -0.08 -1.25 6.32 29.75 0.19 -1.06 16 5 C 0.07 1.48 5.10 86.27 0.44 1.92 16 6 N -0.44 -11.21 4.76 -710.45 -3.39 -14.59 16 7 C 0.35 11.58 7.18 260.11 1.87 13.45 16 8 N -0.36 -14.15 11.11 -58.00 -0.64 -14.80 16 9 N -0.33 -14.15 12.18 -49.54 -0.60 -14.76 16 10 C 0.20 7.74 7.32 137.64 1.01 8.74 16 11 C -0.01 -0.30 5.36 29.85 0.16 -0.14 16 12 C 0.01 0.25 4.02 29.85 0.12 0.37 16 13 C -0.52 -29.42 9.66 25.60 0.25 -29.18 16 14 H 0.05 2.96 7.99 -2.91 -0.02 2.94 16 15 C 0.02 1.05 5.47 84.66 0.46 1.51 16 16 N -0.94 -57.79 13.96 21.45 0.30 -57.49 16 17 Si 0.94 44.97 27.47 68.60 1.88 46.85 16 18 H -0.27 -13.10 7.11 99.48 0.71 -12.40 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 20 H -0.26 -11.76 6.54 99.48 0.65 -11.11 16 21 N -0.47 -15.11 2.81 -514.86 -1.44 -16.56 16 22 C 0.13 3.15 5.27 86.38 0.46 3.61 16 23 C -0.19 -3.60 4.33 -10.79 -0.05 -3.65 16 24 C -0.18 -3.44 10.18 30.59 0.31 -3.12 16 25 C -0.14 -1.81 10.25 30.59 0.31 -1.50 16 26 C 0.08 1.64 4.25 85.39 0.36 2.01 16 27 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.08 0.57 7.93 -2.38 -0.02 0.55 16 29 H 0.07 0.59 8.06 -2.39 -0.02 0.57 16 30 H 0.13 1.22 7.87 -2.91 -0.02 1.20 16 31 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.10 1.14 8.14 -2.39 -0.02 1.13 16 33 H 0.05 1.11 8.08 -2.39 -0.02 1.09 16 34 H 0.08 2.06 7.67 -2.39 -0.02 2.04 16 35 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 36 H 0.09 3.36 7.93 -2.38 -0.02 3.35 16 37 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 38 H 0.01 0.34 7.57 -2.39 -0.02 0.32 16 39 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 40 H 0.11 2.35 7.50 -2.38 -0.02 2.34 16 41 H 0.10 2.56 7.62 -2.39 -0.02 2.54 16 42 H 0.10 2.08 7.10 -2.39 -0.02 2.06 16 43 H 0.09 2.03 8.03 -2.39 -0.02 2.01 16 44 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 45 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.11 1.90 4.20 -2.39 -0.01 1.89 16 48 H 0.04 0.93 8.07 -2.39 -0.02 0.91 16 Total: -1.00 -72.11 381.19 3.74 -68.36 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 0.88 Total: 14.30 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: 6.76 Total: -11.32 kcal Atomic # 7 Polarization: -112.41 SS G_CDS: -5.78 Total: -118.19 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.88 Total: 46.85 kcal Total: -72.11 3.74 -68.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519609047.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.354 kcal (2) G-P(sol) polarization free energy of solvation -72.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds