Wall clock time and date at job start Tue Mar 31 2020 11:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09006 * 109.47112 * 2 1 4 4 C 1.50703 * 109.47306 * 239.99767 * 2 1 3 5 5 H 1.07994 * 120.00005 * 245.23706 * 4 2 1 6 6 C 1.37877 * 119.99451 * 65.23530 * 4 2 1 7 7 N 1.31511 * 120.00534 * 5.50185 * 6 4 2 8 8 Si 1.86807 * 119.99576 * 185.49929 * 6 4 2 9 9 H 1.48505 * 109.46834 * 94.99736 * 8 6 4 10 10 H 1.48495 * 109.46966 * 214.99777 * 8 6 4 11 11 H 1.48499 * 109.47017 * 334.99995 * 8 6 4 12 12 N 1.46897 * 109.47274 * 119.99892 * 2 1 3 13 13 C 1.46900 * 111.00462 * 176.04663 * 12 2 1 14 14 C 1.38577 * 111.00067 * 299.99707 * 12 2 1 15 15 N 1.31218 * 126.47267 * 340.92739 * 14 12 2 16 16 N 1.28527 * 109.85969 * 179.81616 * 15 14 12 17 17 C 1.30293 * 110.05665 * 0.45057 * 16 15 14 18 18 C 1.50698 * 126.35075 * 179.76149 * 17 16 15 19 19 C 1.54630 * 111.03945 * 51.98459 * 18 17 16 20 20 C 1.51102 * 104.72813 * 217.33706 * 19 18 17 21 21 C 1.30529 * 111.10390 * 16.42980 * 20 19 18 22 22 C 1.51104 * 111.10276 * 0.02562 * 21 20 19 23 23 N 1.36458 * 126.47577 * 161.22734 * 14 12 2 24 24 C 1.46504 * 127.13143 * 0.03277 * 23 14 12 25 25 C 1.52997 * 109.47068 * 265.03268 * 24 23 14 26 26 C 1.52992 * 117.50443 * 244.95057 * 25 24 23 27 27 C 1.53002 * 60.00273 * 252.51024 * 26 25 24 28 28 H 1.08999 * 109.47543 * 65.51613 * 1 2 3 29 29 H 1.09006 * 109.47469 * 185.51447 * 1 2 3 30 30 H 1.09007 * 109.47443 * 305.51553 * 1 2 3 31 31 H 0.96998 * 119.99942 * 180.02562 * 7 6 4 32 32 H 1.08992 * 109.47594 * 183.35018 * 13 12 2 33 33 H 1.08995 * 109.47023 * 303.35315 * 13 12 2 34 34 H 1.09005 * 109.46983 * 63.34711 * 13 12 2 35 35 H 1.09008 * 110.91179 * 175.99455 * 18 17 16 36 36 H 1.09006 * 110.38519 * 336.14394 * 19 18 17 37 37 H 1.08995 * 110.38817 * 98.52048 * 19 18 17 38 38 H 1.07999 * 124.45005 * 196.45969 * 20 19 18 39 39 H 1.07997 * 124.44886 * 179.97438 * 21 20 19 40 40 H 1.08997 * 110.38843 * 224.74902 * 22 21 20 41 41 H 1.09000 * 110.38470 * 102.37431 * 22 21 20 42 42 H 1.08993 * 109.47496 * 25.03936 * 24 23 14 43 43 H 1.08999 * 109.46883 * 145.03953 * 24 23 14 44 44 H 1.09007 * 115.54655 * 30.66015 * 25 24 23 45 45 H 1.09003 * 117.49881 * 0.02562 * 26 25 24 46 46 H 1.08998 * 117.50049 * 145.02138 * 26 25 24 47 47 H 1.08997 * 117.49647 * 252.50846 * 27 26 25 48 48 H 1.08994 * 117.49622 * 107.48379 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5816 -1.6352 -1.1336 6 6 1.7905 -0.1798 -2.4798 7 7 1.2175 0.9984 -2.5942 8 14 2.2769 -1.1344 -4.0101 9 1 1.1091 -1.9085 -4.5025 10 1 2.7228 -0.1874 -5.0634 11 1 3.3852 -2.0663 -3.6807 12 7 2.0196 -0.6924 1.1994 13 6 3.4850 -0.7945 1.1871 14 6 1.5753 -0.0640 2.3518 15 7 1.1280 1.1659 2.4467 16 7 0.7983 1.4180 3.6631 17 6 1.0228 0.3758 4.4121 18 6 0.7736 0.2709 5.8946 19 6 -0.6710 0.6959 6.2461 20 6 -0.5465 1.4291 7.5615 21 6 0.6918 1.7704 7.7938 22 6 1.5994 1.3224 6.6718 23 7 1.5258 -0.6054 3.6034 24 6 1.9286 -1.9574 3.9988 25 6 0.7044 -2.8751 3.9975 26 6 0.2571 -3.4582 5.3394 27 6 0.9322 -4.3572 4.3016 28 1 -0.3634 0.4259 -0.9352 29 1 -0.3634 -1.0229 0.0988 30 1 -0.3634 0.5970 0.8365 31 1 1.0471 1.3715 -3.4732 32 1 3.8170 -1.3629 2.0558 33 1 3.8063 -1.3010 0.2770 34 1 3.9191 0.2049 1.2192 35 1 0.9842 -0.7363 6.2542 36 1 -1.0692 1.3591 5.4781 37 1 -1.3081 -0.1812 6.3591 38 1 -1.3733 1.6422 8.2228 39 1 1.0239 2.3038 8.6722 40 1 2.5061 0.8707 7.0742 41 1 1.8480 2.1641 6.0255 42 1 2.6680 -2.3370 3.2937 43 1 2.3609 -1.9298 4.9990 44 1 -0.0713 -2.6232 3.2742 45 1 0.8347 -3.1877 6.2233 46 1 -0.8130 -3.5899 5.4993 47 1 0.3061 -5.0803 3.7788 48 1 1.9541 -4.6784 4.5026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519636314.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:15 Heat of formation + Delta-G solvation = 137.841091 kcal Electronic energy + Delta-G solvation = -27558.059255 eV Core-core repulsion = 24037.128186 eV Total energy + Delta-G solvation = -3520.931069 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.52287 -38.62072 -37.81089 -36.96495 -34.07246 -32.80559 -30.86436 -29.32561 -28.24959 -27.97309 -27.36529 -25.32330 -24.31909 -22.77703 -22.43532 -21.69556 -21.05547 -19.79778 -19.08309 -18.86839 -17.19301 -16.30574 -16.13884 -15.92461 -15.46699 -15.23115 -14.89191 -14.58735 -14.23777 -13.61151 -13.44361 -13.07786 -12.76032 -12.38776 -12.34488 -12.23488 -12.05539 -11.90469 -11.77465 -11.70587 -11.49508 -11.23857 -11.17025 -11.05281 -10.92072 -10.67406 -10.60099 -10.31907 -10.27194 -10.19157 -10.12503 -9.87533 -9.61989 -9.15436 -8.96022 -8.62721 -8.42079 -7.42202 -6.05323 -4.10696 2.13572 2.25351 2.65029 3.28844 3.35948 3.37675 3.40452 3.59209 4.31582 4.32514 4.45703 4.57509 4.59880 4.63757 4.69874 4.83257 4.91126 4.99559 5.18230 5.24062 5.28294 5.35953 5.41448 5.42634 5.56278 5.66839 5.68790 5.73465 5.79292 5.86322 5.89873 5.92430 6.06407 6.08599 6.17522 6.35225 6.41066 6.41888 6.55300 6.78643 6.92705 6.94553 7.10677 7.22475 7.46905 7.66886 7.75680 7.94178 8.16871 8.47784 8.92598 9.38609 9.53437 11.02990 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.016748 B = 0.003860 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.403019 B = 7251.935223 C = 8209.972830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.228 3.772 3 H 0.031 0.969 4 C -0.517 4.517 5 H 0.064 0.936 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.461 5.461 13 C 0.042 3.958 14 C 0.384 3.616 15 N -0.315 5.315 16 N -0.283 5.283 17 C 0.162 3.838 18 C 0.004 3.996 19 C -0.089 4.089 20 C -0.162 4.162 21 C -0.166 4.166 22 C -0.090 4.090 23 N -0.479 5.479 24 C 0.146 3.854 25 C -0.166 4.166 26 C -0.179 4.179 27 C -0.166 4.166 28 H 0.075 0.925 29 H 0.025 0.975 30 H 0.027 0.973 31 H 0.263 0.737 32 H 0.043 0.957 33 H 0.097 0.903 34 H 0.029 0.971 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.113 0.887 45 H 0.094 0.906 46 H 0.095 0.905 47 H 0.098 0.902 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.603 -7.143 20.285 21.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.124 3.876 3 H 0.048 0.952 4 C -0.555 4.555 5 H 0.083 0.917 6 C -0.138 4.138 7 N -0.520 5.520 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.186 5.186 13 C -0.105 4.105 14 C 0.028 3.972 15 N -0.159 5.159 16 N -0.123 5.123 17 C -0.106 4.106 18 C -0.017 4.017 19 C -0.127 4.127 20 C -0.180 4.180 21 C -0.184 4.184 22 C -0.128 4.128 23 N -0.174 5.174 24 C 0.022 3.978 25 C -0.185 4.185 26 C -0.216 4.216 27 C -0.204 4.204 28 H 0.094 0.906 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.115 0.885 34 H 0.048 0.952 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.121 0.879 43 H 0.104 0.896 44 H 0.131 0.869 45 H 0.113 0.887 46 H 0.114 0.886 47 H 0.117 0.883 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.027 -6.084 19.650 20.571 hybrid contribution 0.765 -1.177 -0.602 1.527 sum 0.738 -7.261 19.048 20.399 Atomic orbital electron populations 1.21750 0.97403 0.98352 1.01191 1.19334 0.92597 0.93312 0.82350 0.95170 1.21036 1.36331 1.08481 0.89697 0.91750 1.24909 0.95228 0.94733 0.98943 1.69980 1.42359 1.15799 1.23873 0.86507 0.78696 0.79668 0.82653 1.20674 1.21249 1.19846 1.59175 1.10494 1.49659 0.99307 1.22301 0.85354 1.00446 1.02397 1.23092 1.00487 0.88518 0.85061 1.74832 1.20174 1.10285 1.10598 1.73903 1.18436 1.22272 0.97641 1.24139 1.04351 0.86812 0.95255 1.20184 0.96877 0.99940 0.84688 1.21391 0.95156 1.00085 0.96020 1.23233 0.97449 1.00092 0.97198 1.23197 0.95515 1.01048 0.98642 1.21424 0.97557 0.98465 0.95361 1.46196 1.50420 1.12715 1.08069 1.21320 0.96201 0.78611 1.01630 1.22587 1.00429 0.95075 1.00390 1.23081 1.01344 1.04405 0.92741 1.22925 1.02141 0.92531 1.02788 0.90640 0.95544 0.95450 0.92751 0.93819 0.88468 0.95206 0.89206 0.89070 0.91040 0.85764 0.85800 0.91222 0.89360 0.87939 0.89628 0.86860 0.88743 0.88647 0.88333 0.88528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.34 8.81 37.15 0.33 -3.01 16 2 C 0.23 5.90 1.60 -68.87 -0.11 5.79 16 3 H 0.03 0.90 7.91 -51.93 -0.41 0.49 16 4 C -0.52 -13.83 7.69 -34.44 -0.26 -14.09 16 5 H 0.06 1.67 6.63 -52.49 -0.35 1.32 16 6 C 0.06 1.77 5.22 -17.82 -0.09 1.68 16 7 N -0.88 -25.44 11.95 55.43 0.66 -24.77 16 8 Si 0.90 20.93 29.54 -169.99 -5.02 15.90 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 12 N -0.46 -10.02 4.63 -176.09 -0.82 -10.84 16 13 C 0.04 0.80 9.10 60.06 0.55 1.35 16 14 C 0.38 8.00 6.16 -318.87 -1.96 6.04 16 15 N -0.32 -7.31 9.91 30.31 0.30 -7.01 16 16 N -0.28 -5.79 11.78 32.99 0.39 -5.40 16 17 C 0.16 2.65 6.62 -154.02 -1.02 1.63 16 18 C 0.00 0.05 3.54 -90.05 -0.32 -0.27 16 19 C -0.09 -1.01 6.37 -26.83 -0.17 -1.18 16 20 C -0.16 -1.57 10.78 -35.70 -0.38 -1.96 16 21 C -0.17 -1.59 10.78 -35.70 -0.38 -1.98 16 22 C -0.09 -0.99 6.37 -26.82 -0.17 -1.16 16 23 N -0.48 -7.90 2.81 -114.09 -0.32 -8.22 16 24 C 0.15 1.79 6.05 -4.04 -0.02 1.76 16 25 C -0.17 -1.91 6.01 -90.62 -0.54 -2.45 16 26 C -0.18 -1.55 10.18 -26.73 -0.27 -1.83 16 27 C -0.17 -1.49 10.25 -26.73 -0.27 -1.77 16 28 H 0.07 2.11 6.61 -51.93 -0.34 1.76 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.03 0.70 6.33 -51.93 -0.33 0.37 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.04 0.67 6.49 -51.93 -0.34 0.33 16 33 H 0.10 1.88 6.22 -51.93 -0.32 1.56 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.90 7.25 -51.92 -0.38 0.52 16 36 H 0.09 1.27 7.63 -51.93 -0.40 0.87 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 1.17 7.82 -51.93 -0.41 0.77 16 42 H 0.10 1.27 6.35 -51.93 -0.33 0.94 16 43 H 0.09 0.81 7.31 -51.93 -0.38 0.44 16 44 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 45 H 0.09 0.69 8.04 -51.93 -0.42 0.27 16 46 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 381.58 15.07 5.75 5.75 Total: -1.00 -31.47 381.58 -11.94 -43.40 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -7.76 Total: 2.64 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -5.12 Total: -11.46 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.22 Total: -56.24 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.47 -11.94 -43.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519636314.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.244 kcal (2) G-P(sol) polarization free energy of solvation -31.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds